Rroxscaffold_2G00150920

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000213
Physical Location & Seq
Reverse (-)
88281457 .. 88282685
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150920.1

Sequence Viewer

Length: 1170 bp
ATGTCTATGAGGACAAAAAAATGGCTTAACCTAGCCAACAGCGACGGGAAGAAGAAGAAGAAGAAGACTAAAGAGACAACCAAGCCCAAGTTGAAGTTGAAGTGGGGGTTGGAGTTGGAGGAGGCTAATAAGTCACTCTACATGTGTATTCTAGAGCACGGGACGGACTGGGCGGCTTATGTTGTCCGCACCATCAAACTGTCGGATTTGTTATCAACTTCGGCGGTGGGGGACAATCCATTGCCATTGCGGCAAGTGGCTTATGAGGCCGGTTCGCATCTCCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACCGGCGGCGTGACACCCAGCTCCCCTCACGGCTTCAGGAATATAGGTCCGGACTCAGTTTGGCATACAAATGTTTATGCCTTTGAAACACACTCAAATGAGATCAGAAAGCTTGATGCCAATTTACAAGGAGGGAAACTTTACCCTCTGACAGTGGAACTGGGCGGCAAACTGTACGCTCTTTCCTATAGGCTGGTCGGTCATCCTCCCTCATTTGAGGTATTTGACCCTAAAATAGGCAAGTGGGAAGGTCTGCCCCAGCCTCCATTTTTCGAAGTTGGCTCTCCATATTATGAACATGGCAACTTCTCTTACGCAATCGCCGGCACGAAGATCTTTGCCTCCCATGAAGAATGTCCTGTGTTCTGCTTTGACGTCGCCCACCCACACAGAGAATGGAGACTGGTCTCTACTATGTGCCGGGGTGGCCCTTTTCCCTTTGATAACAAAGTTGCATTAGTCCTGGACCTGCAGGGGGACGATGACAAGAAAATAATGTTTGCCTACAGTCATGAGCCTTGGCGTCTATGGGATGCCGTCTTGCCTGATGAATTGGGTTTGCCACAACGCTGTGAATTTTTGCGCATTGGAGGTCAGAAAGCGTGCCTTGTTGTCACCGAAATTGGGGTCCGTGATGAAGACGCTCCTGCTTATAATGAGCTCGGTACTCATAAGAGACACGGTGCAGTCATTCCATTTCAATTTGATGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAGCACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCACTCTTCCTGAACCTGAAACGGTTGGTTGCTTTCTGTTGTAA

Protein Analysis

389

Amino Acids

43.64

Weight (kDa)

6.92

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 46 - 261 4.4e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
AatII GACGTC 1 cut(s) 705
Acc16I TGCGCA 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 804
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 7 cut(s) 173, 187, 224, 250, 300, 333, 492
AclWI GGATC 3 cut(s) 295, 306, 319
AcsI RAATTY 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 346
AcyI GRCGYC 2 cut(s) 702, 850
AfaI GTAC 2 cut(s) 503, 994
AfiI CCNNNNNNNGG 3 cut(s) 563, 802, 951
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 4 cut(s) 94, 100, 413, 1028
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AleI CACNNNNGTG 1 cut(s) 1049
AluBI AGCT 4 cut(s) 348, 439, 988, 1104
AluI AGCT 4 cut(s) 348, 439, 988, 1104
Alw21I GWGCWC 2 cut(s) 159, 990
Alw26I GTCTC 4 cut(s) 68, 721, 739, 997
AlwI GGATC 3 cut(s) 295, 306, 319
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 2 cut(s) 267, 754
ApeKI GCWGC 1 cut(s) 1101
ApoI RAATTY 1 cut(s) 902
ArsI GACNNNNNNTTYG 2 cut(s) 939, 971
AspLEI GCGC 1 cut(s) 912
AspS9I GGNCC 4 cut(s) 374, 755, 793, 955
AsuC2I CCSGG 2 cut(s) 285, 749
AsuHPI GGTGA 3 cut(s) 319, 934, 1036
AsuII TTCGAA 2 cut(s) 600, 1107
AvaII GGWCC 3 cut(s) 374, 793, 955
BamHI GGATCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 990
BbsI GAAGAC 2 cut(s) 71, 972
Bbv12I GWGCWC 2 cut(s) 159, 990
BbvI GCAGC 1 cut(s) 1113
BccI CCATC 2 cut(s) 200, 1132
BceAI ACGGC 2 cut(s) 373, 848
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 2 cut(s) 285, 749
BcoDI GTCTC 4 cut(s) 68, 721, 739, 997
BfaI CTAG 2 cut(s) 32, 152
BfmI CTRYAG 3 cut(s) 514, 797, 832
BfuAI ACCTGC 1 cut(s) 804
BglI GCCNNNNNGGC 2 cut(s) 250, 753
BglII AGATCT 1 cut(s) 660
BisI GCNGC 5 cut(s) 174, 251, 334, 493, 1102
BlsI GCNGC 5 cut(s) 175, 252, 335, 494, 1103
Bme1390I CCNGG 3 cut(s) 285, 749, 791
Bme18I GGWCC 3 cut(s) 374, 793, 955
BmgT120I GGNCC 4 cut(s) 374, 755, 793, 955
BmiI GGNNCC 2 cut(s) 313, 956
BmrFI CCNGG 3 cut(s) 285, 749, 791
BmrI ACTGGG 2 cut(s) 178, 497
BmsI GCATC 3 cut(s) 286, 433, 850
BmuI ACTGGG 2 cut(s) 178, 497
BpiI GAAGAC 2 cut(s) 71, 972
Bpu14I TTCGAA 2 cut(s) 600, 1107
BpuMI CCSGG 2 cut(s) 285, 749
BsaHI GRCGYC 2 cut(s) 702, 850
BsaI GGTCTC 1 cut(s) 739
BsaJI CCNNGG 4 cut(s) 283, 748, 845, 1047
BsaWI WCCGGW 1 cut(s) 376
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 802, 951
Bse118I RCCGGY 3 cut(s) 269, 329, 650
Bse1I ACTGG 3 cut(s) 173, 492, 735
Bse3DI GCAATG 2 cut(s) 239, 245
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 4 cut(s) 283, 748, 845, 1047
BseGI GGATG 3 cut(s) 529, 865, 1124
BseLI CCNNNNNNNGG 3 cut(s) 563, 802, 951
BseMI GCAATG 2 cut(s) 239, 245
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 3 cut(s) 173, 492, 735
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 1113
BseYI CCCAGC 2 cut(s) 344, 585
BsgI GTGCAG 1 cut(s) 1032
BshFI GGCC 2 cut(s) 269, 756
BsiHKAI GWGCWC 2 cut(s) 159, 990
BsiSI CCGG 6 cut(s) 270, 285, 330, 377, 651, 748
BslFI GGGAC 3 cut(s) 175, 245, 818
BslI CCNNNNNNNGG 3 cut(s) 563, 802, 951
BsmAI GTCTC 4 cut(s) 68, 721, 739, 997
BsmFI GGGAC 3 cut(s) 175, 245, 818
BsnI GGCC 2 cut(s) 269, 756
Bso31I GGTCTC 1 cut(s) 739
Bsp119I TTCGAA 2 cut(s) 600, 1107
Bsp1286I GDGCHC 2 cut(s) 159, 990
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 4 cut(s) 287, 311, 429, 660
BspACI CCGC 7 cut(s) 173, 187, 224, 250, 300, 333, 492
BspANI GGCC 2 cut(s) 269, 756
BspCNI CTCAG 1 cut(s) 395
BspEI TCCGGA 1 cut(s) 376
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 2 cut(s) 313, 956
BspMAI CTGCAG 1 cut(s) 801
BspMI ACCTGC 1 cut(s) 804
BspPI GGATC 3 cut(s) 295, 306, 319
BspT104I TTCGAA 2 cut(s) 600, 1107
BspTNI GGTCTC 1 cut(s) 739
BsrDI GCAATG 2 cut(s) 239, 245
BsrFI RCCGGY 3 cut(s) 269, 329, 650
BsrI ACTGG 3 cut(s) 173, 492, 735
BssAI RCCGGY 3 cut(s) 269, 329, 650
BssECI CCNNGG 4 cut(s) 283, 748, 845, 1047
BssMI GATC 4 cut(s) 287, 311, 429, 660
BssNI GRCGYC 2 cut(s) 702, 850
BssT1I CCWWGG 2 cut(s) 845, 1047
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 6 cut(s) 201, 481, 501, 836, 1010, 1150
Bst6I CTCTTC 2 cut(s) 1101, 1137
BstACI GRCGYC 2 cut(s) 702, 850
BstBI TTCGAA 2 cut(s) 600, 1107
BstC8I GCNNGC 2 cut(s) 652, 931
BstDEI CTNAG 1 cut(s) 382
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 3 cut(s) 529, 865, 1124
BstHHI GCGC 1 cut(s) 912
BstKTI GATC 4 cut(s) 290, 314, 432, 663
BstMAI GTCTC 4 cut(s) 68, 721, 739, 997
BstMBI GATC 4 cut(s) 287, 311, 429, 660
BstMWI GCNNNNNNNGC 3 cut(s) 250, 266, 753
BstNI CCWGG 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 3 cut(s) 283, 747, 789
BstSFI CTRYAG 3 cut(s) 514, 797, 832
BstV1I GCAGC 1 cut(s) 1113
BstV2I GAAGAC 2 cut(s) 71, 972
BstX2I RGATCY 3 cut(s) 287, 311, 660
BstYI RGATCY 3 cut(s) 287, 311, 660
BsuRI GGCC 2 cut(s) 269, 756
BtsCI GGATG 3 cut(s) 529, 865, 1124
BtsIMutI CAGTG 1 cut(s) 486
BveI ACCTGC 1 cut(s) 804
Cac8I GCNNGC 2 cut(s) 652, 931
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 912
Cfr10I RCCGGY 3 cut(s) 269, 329, 650
Cfr13I GGNCC 4 cut(s) 374, 755, 793, 955
CseI GACGC 2 cut(s) 839, 977
Csp6I GTAC 2 cut(s) 502, 993
CviAII CATG 5 cut(s) 142, 626, 674, 839, 1090
CviQI GTAC 2 cut(s) 502, 993
DdeI CTNAG 1 cut(s) 382
DpnI GATC 4 cut(s) 289, 313, 431, 662
DpnII GATC 4 cut(s) 287, 311, 429, 660
Eam1104I CTCTTC 2 cut(s) 1101, 1137
EarI CTCTTC 2 cut(s) 1101, 1137
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 2 cut(s) 845, 1047
Eco24I GRGCYC 1 cut(s) 990
Eco31I GGTCTC 1 cut(s) 739
Eco32I GATATC 1 cut(s) 1042
Eco47I GGWCC 3 cut(s) 374, 793, 955
Eco53kI GAGCTC 1 cut(s) 988
Eco57I CTGAAG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 988
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 789
EcoRV GATATC 1 cut(s) 1042
EcoT14I CCWWGG 2 cut(s) 845, 1047
EcoT38I GRGCYC 1 cut(s) 990
ErhI CCWWGG 2 cut(s) 845, 1047
FaeI CATG 5 cut(s) 145, 629, 677, 842, 1093
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 3 cut(s) 175, 245, 818
FatI CATG 5 cut(s) 141, 625, 673, 838, 1089
Fnu4HI GCNGC 5 cut(s) 174, 251, 334, 493, 1102
FokI GGATG 3 cut(s) 516, 872, 1111
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 5 cut(s) 174, 251, 334, 493, 1102
FspBI CTAG 2 cut(s) 32, 152
FspI TGCGCA 1 cut(s) 911
GlaI GCGC 1 cut(s) 911
GluI GCNGC 5 cut(s) 174, 251, 334, 493, 1102
GsaI CCCAGC 2 cut(s) 348, 589
HaeIII GGCC 2 cut(s) 269, 756
HapII CCGG 6 cut(s) 270, 285, 330, 377, 651, 748
HgaI GACGC 2 cut(s) 839, 977
HhaI GCGC 1 cut(s) 912
Hin1I GRCGYC 2 cut(s) 702, 850
Hin1II CATG 5 cut(s) 145, 629, 677, 842, 1093
Hin6I GCGC 1 cut(s) 910
HinP1I GCGC 1 cut(s) 910
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 380
HpaII CCGG 6 cut(s) 270, 285, 330, 377, 651, 748
HphI GGTGA 3 cut(s) 319, 934, 1036
Hpy166II GTNNAC 1 cut(s) 1054
Hpy188I TCNGA 4 cut(s) 205, 434, 477, 924
Hpy188III TCNNGA 5 cut(s) 152, 364, 377, 839, 1136
Hpy8I GTNNAC 1 cut(s) 1054
Hpy99I CGWCG 2 cut(s) 47, 707
HpyAV CCTTC 1 cut(s) 569
HpyCH4III ACNGT 6 cut(s) 201, 481, 501, 836, 1010, 1150
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 3 cut(s) 782, 799, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 266, 753
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 2 cut(s) 702, 850
Hsp92II CATG 5 cut(s) 145, 629, 677, 842, 1093
HspAI GCGC 1 cut(s) 910
Kpn2I TCCGGA 1 cut(s) 376
KroI GCCGGC 1 cut(s) 650
KroNI GCCGGC 1 cut(s) 652
Kzo9I GATC 4 cut(s) 287, 311, 429, 660
LmnI GCTCC 2 cut(s) 353, 976
Lsp1109I GCAGC 1 cut(s) 1113
LweI GCATC 3 cut(s) 286, 433, 850
MaeI CTAG 2 cut(s) 32, 152
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 132, 337, 940
MalI GATC 4 cut(s) 289, 313, 431, 662
MboI GATC 4 cut(s) 287, 311, 429, 660
MflI RGATCY 3 cut(s) 287, 311, 660
MhlI GDGCHC 2 cut(s) 159, 990
MluCI AATT 8 cut(s) 318, 448, 878, 902, 948, 1028, 1069, 1085
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 3 cut(s) 90, 96, 183
MroI TCCGGA 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 650
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 3 cut(s) 396, 423, 1049
MspI CCGG 6 cut(s) 270, 285, 330, 377, 651, 748
MspR9I CCNGG 3 cut(s) 285, 749, 791
MvaI CCWGG 1 cut(s) 791
MwoI GCNNNNNNNGC 3 cut(s) 250, 266, 753
NaeI GCCGGC 1 cut(s) 652
NciI CCSGG 2 cut(s) 285, 749
NdeII GATC 4 cut(s) 287, 311, 429, 660
NgoMIV GCCGGC 1 cut(s) 650
NlaIII CATG 5 cut(s) 145, 629, 677, 842, 1093
NlaIV GGNNCC 2 cut(s) 313, 956
NmuCI GTSAC 3 cut(s) 132, 337, 940
NsbI TGCGCA 1 cut(s) 911
NspI RCATGY 1 cut(s) 145
NspV TTCGAA 2 cut(s) 600, 1107
OliI CACNNNNGTG 1 cut(s) 1049
PagI TCATGA 1 cut(s) 838
PciI ACATGT 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 652
PfoI TCCNGGA 1 cut(s) 789
PkrI GCNGC 5 cut(s) 175, 252, 335, 494, 1103
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 990
Psp6I CCWGG 1 cut(s) 789
PspFI CCCAGC 2 cut(s) 344, 585
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 2 cut(s) 313, 956
PspPI GGNCC 4 cut(s) 374, 755, 793, 955
PstI CTGCAG 1 cut(s) 801
PsuI RGATCY 3 cut(s) 287, 311, 660
RsaI GTAC 2 cut(s) 503, 994
RsaNI GTAC 2 cut(s) 502, 993
RseI CAYNNNNRTG 3 cut(s) 396, 423, 1049
SacI GAGCTC 1 cut(s) 990
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 5 cut(s) 174, 251, 334, 493, 1102
Sau3AI GATC 4 cut(s) 287, 311, 429, 660
Sau96I GGNCC 4 cut(s) 374, 755, 793, 955
SbfI CCTGCAGG 1 cut(s) 801
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 285, 749, 791
SdaI CCTGCAGG 1 cut(s) 801
SduI GDGCHC 2 cut(s) 159, 990
SfaNI GCATC 3 cut(s) 286, 433, 850
SfcI CTRYAG 3 cut(s) 514, 797, 832
SfuI TTCGAA 2 cut(s) 600, 1107
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 3 cut(s) 374, 793, 955
SmiMI CAYNNNNRTG 3 cut(s) 396, 423, 1049
Sse8387I CCTGCAGG 1 cut(s) 801
Sse9I AATT 8 cut(s) 318, 448, 878, 902, 948, 1028, 1069, 1085
SsiI CCGC 7 cut(s) 173, 187, 224, 250, 300, 333, 492
SspMI CTAG 2 cut(s) 32, 152
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 3 cut(s) 283, 747, 789
StyI CCWWGG 2 cut(s) 845, 1047
TaaI ACNGT 6 cut(s) 201, 481, 501, 836, 1010, 1150
TaiI ACGT 1 cut(s) 705
TaqI TCGA 2 cut(s) 600, 1107
TaqII GACCGA 1 cut(s) 515
TasI AATT 8 cut(s) 318, 448, 878, 902, 948, 1028, 1069, 1085
TauI GCSGC 4 cut(s) 176, 253, 336, 495
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 3 cut(s) 132, 337, 940
TseI GCWGC 1 cut(s) 1101
Tsp45I GTSAC 3 cut(s) 132, 337, 940
TspDTI ATGAA 5 cut(s) 636, 690, 891, 978, 1078
TspGWI ACGGA 2 cut(s) 179, 947
TspRI CASTG 1 cut(s) 486
VpaK11BI GGWCC 3 cut(s) 374, 793, 955
XagI CCTNNNNNAGG 1 cut(s) 561
XapI RAATTY 1 cut(s) 902
XbaI TCTAGA 1 cut(s) 151
XceI RCATGY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 720
XspI CTAG 2 cut(s) 32, 152
ZraI GACGTC 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.