Rh2AG055200

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000213
Physical Location & Seq
Forward (+)
4348461 .. 4349375
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG055200.1

Sequence Viewer

Length: 915 bp
ATGAAACCCTGCGGCCGTATGCCTTCATTTGATCGTCCCGACATAGTTTGGCATAGAGATGTTTACGCCTTTGAAACTGACCCCAACAAGCAGCCTCGTGATAATAGTAGAATTACCAAGATGGGTGGCACATTAGTTGAAGCCAAGTTTCTTCCTCTGATGGAGGAGGTGGGGGGCAAACTGTATGCACTTTCATATACGCTGGTGGCTGATCCTCCCTCATTTGAGGTATTCGACCCGAAAGTGGGGAGTTGGGCGCCCCTGCCCCAGCCTCCATTCTTCAAACGTCTTGGTCAGTATAACCGCGGTGGCTTCCTCTCTTATGCAGTTACTGGCACCAAGATGTTTGTGTCTCAGGCGAGATGTCCTGTGTTCTGTTTCGATGTAGCTCATCCAGACAGAGAATGGAGATTAGTCTCTTCTATGTGCCAACGCGGCCCTTTTCCTTTTGTAAACAAAGCTTTGGTCCTGGACCTGCCGGCGGGTGCTGATGACAAGAAGAAGATAATGTTTGCCTATAGTTTTGGTCGTTGGTATCTAGGAGTTTATCTTATGTCCTTGGAAGAAAATCAAGAATCTATCACCCGAATTGGTGATTTTCAGCTGCCAAGGTTGCCTCAGCAATATGAATTTGCACAAAGATGTTATTTTGTCCATATAGGAGGTCAGAAAGCCTGCATTGTTGCCCCCGAATTGGTTAGGCCATATAAACAAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACAGGGTGTTGCCATACCATTTCAATTTGAAGTTGATATCACCAAGGTCGACAAGGACGAGAAGAATTGTTTGACCCTCCAATTCATGCCTACTCGTATCTACGAATTCTATACCAACCCGTCCACTTTTCCTGATCCTGATGCGGAAGGTTGCTTTGTGCTATAA

Protein Analysis

304

Amino Acids

34.71

Weight (kDa)

6.89

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 44 - 155 2.8e-12 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccB1I GGYRCC 2 cut(s) 256, 335
AccI GTMKAC 1 cut(s) 798
AccII CGCG 2 cut(s) 306, 435
AciI CCGC 6 cut(s) 12, 304, 306, 435, 482, 893
AclWI GGATC 2 cut(s) 206, 878
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 2 cut(s) 629, 854
AcyI GRCGYC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 755
AfiI CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
AgsI TTSAA 5 cut(s) 74, 140, 283, 773, 779
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 3 cut(s) 389, 461, 604
AluI AGCT 3 cut(s) 389, 461, 604
Alw26I GTCTC 2 cut(s) 357, 421
AlwI GGATC 2 cut(s) 206, 878
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 3 cut(s) 13, 436, 701
ApeKI GCWGC 2 cut(s) 91, 604
ApoI RAATTY 2 cut(s) 629, 854
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 4 cut(s) 437, 466, 472, 716
AsuHPI GGTGA 3 cut(s) 574, 605, 781
AvaII GGWCC 3 cut(s) 466, 472, 716
BanI GGYRCC 2 cut(s) 256, 335
BauI CACGAG 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 2 cut(s) 103, 591
BccI CCATC 2 cut(s) 115, 154
BciT130I CCWGG 1 cut(s) 470
BcoDI GTCTC 2 cut(s) 357, 421
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 517
BfoI RGCGCY 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 483
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 4 cut(s) 13, 92, 436, 605
BlsI GCNGC 4 cut(s) 14, 93, 437, 606
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 3 cut(s) 466, 472, 716
BmgT120I GGNCC 4 cut(s) 437, 466, 472, 716
BmiI GGNNCC 2 cut(s) 258, 337
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 880
Bpu10I CCTNAGC 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 304, 558, 608, 792
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
Bse118I RCCGGY 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 4 cut(s) 304, 558, 608, 792
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
BseMII CTCAG 2 cut(s) 368, 632
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 179
BseX3I CGGCCG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 103, 591
BseYI CCCAGC 2 cut(s) 267, 734
Bsh1236I CGCG 2 cut(s) 306, 435
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 3 cut(s) 15, 438, 703
BshNI GGYRCC 2 cut(s) 256, 335
BsiEI CGRYCG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 2 cut(s) 21, 751
BslI CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
BsmAI GTCTC 2 cut(s) 357, 421
BsmFI GGGAC 2 cut(s) 21, 751
BsnI GGCC 3 cut(s) 15, 438, 703
Bsp143I GATC 3 cut(s) 31, 211, 883
BspACI CCGC 6 cut(s) 12, 304, 306, 435, 482, 893
BspANI GGCC 3 cut(s) 15, 438, 703
BspCNI CTCAG 2 cut(s) 367, 631
BspFNI CGCG 2 cut(s) 306, 435
BspLI GGNNCC 2 cut(s) 258, 337
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 2 cut(s) 206, 878
BspT107I GGYRCC 2 cut(s) 256, 335
BsrFI RCCGGY 1 cut(s) 478
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 4 cut(s) 304, 558, 608, 792
BssMI GATC 3 cut(s) 31, 211, 883
BssNI GRCGYC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 3 cut(s) 558, 608, 792
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 424
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 480, 676
BstDEI CTNAG 2 cut(s) 354, 618
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 2 cut(s) 306, 435
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 34, 214, 886
BstMAI GTCTC 2 cut(s) 357, 421
BstMBI GATC 3 cut(s) 31, 211, 883
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 435, 613
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 517
BstUI CGCG 2 cut(s) 306, 435
BstV1I GCAGC 2 cut(s) 103, 591
BstZI CGGCCG 1 cut(s) 13
BsuRI GGCC 3 cut(s) 15, 438, 703
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 480, 676
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 4 cut(s) 437, 466, 472, 716
Cfr42I CCGCGG 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 1 cut(s) 835
DdeI CTNAG 2 cut(s) 354, 618
DinI GGCGCC 1 cut(s) 258
DpnI GATC 3 cut(s) 33, 213, 885
DpnII GATC 3 cut(s) 31, 211, 883
DraIII CACNNNGTG 1 cut(s) 755
EaeI YGGCCR 1 cut(s) 13
EagI CGGCCG 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
EclXI CGGCCG 1 cut(s) 13
Eco130I CCWWGG 3 cut(s) 558, 608, 792
Eco32I GATATC 1 cut(s) 787
Eco47I GGWCC 3 cut(s) 466, 472, 716
Eco52I CGGCCG 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 854
EcoRII CCWGG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 787
EcoT14I CCWWGG 3 cut(s) 558, 608, 792
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
ErhI CCWWGG 3 cut(s) 558, 608, 792
FaeI CATG 1 cut(s) 838
FaqI GGGAC 2 cut(s) 21, 751
FatI CATG 1 cut(s) 834
FauI CCCGC 1 cut(s) 475
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 4 cut(s) 13, 92, 436, 605
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 4 cut(s) 13, 92, 436, 605
FspBI CTAG 1 cut(s) 539
GlaI GCGC 1 cut(s) 258
GluI GCNGC 4 cut(s) 13, 92, 436, 605
GsaI CCCAGC 2 cut(s) 271, 738
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 3 cut(s) 15, 438, 703
HapII CCGG 1 cut(s) 479
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 838
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 2 cut(s) 575, 739
HpaII CCGG 1 cut(s) 479
HphI GGTGA 3 cut(s) 574, 605, 781
Hpy166II GTNNAC 4 cut(s) 64, 454, 799, 873
Hpy188I TCNGA 2 cut(s) 159, 669
Hpy188III TCNNGA 6 cut(s) 38, 98, 395, 572, 881, 887
Hpy8I GTNNAC 4 cut(s) 64, 454, 799, 873
HpyAV CCTTC 2 cut(s) 33, 890
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 4 cut(s) 188, 326, 635, 678
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 613
HpyF3I CTNAG 2 cut(s) 354, 618
HpySE526I ACGT 1 cut(s) 286
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 838
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
KroI GCCGGC 1 cut(s) 478
KroNI GCCGGC 1 cut(s) 480
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 3 cut(s) 31, 211, 883
Lsp1109I GCAGC 2 cut(s) 103, 591
LweI GCATC 1 cut(s) 880
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 33, 213, 885
MboI GATC 3 cut(s) 31, 211, 883
MboII GAAGA 7 cut(s) 143, 271, 411, 511, 514, 575, 823
MluCI AATT 8 cut(s) 111, 588, 629, 692, 773, 814, 830, 854
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 1 cut(s) 733
MroNI GCCGGC 1 cut(s) 478
MseI TTAA 1 cut(s) 726
MslI CAYNNNNRTG 3 cut(s) 57, 341, 640
MspA1I CMGCKG 2 cut(s) 306, 604
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 2 cut(s) 306, 435
MwoI GCNNNNNNNGC 2 cut(s) 435, 613
NaeI GCCGGC 1 cut(s) 480
NarI GGCGCC 1 cut(s) 257
NdeII GATC 3 cut(s) 31, 211, 883
NgoMIV GCCGGC 1 cut(s) 478
NlaIII CATG 1 cut(s) 838
NlaIV GGNNCC 2 cut(s) 258, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 804
PdiI GCCGGC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 575
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 4 cut(s) 14, 93, 437, 606
PleI GAGTC 1 cut(s) 733
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 733
PpuMI RGGWCCY 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 468
PspFI CCCAGC 2 cut(s) 267, 734
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 258, 337
PspPI GGNCC 4 cut(s) 437, 466, 472, 716
PspPPI RGGWCCY 1 cut(s) 716
PstNI CAGNNNCTG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 604
RseI CAYNNNNRTG 3 cut(s) 57, 341, 640
SacII CCGCGG 1 cut(s) 307
SalI GTCGAC 1 cut(s) 797
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 4 cut(s) 13, 92, 436, 605
Sau3AI GATC 3 cut(s) 31, 211, 883
Sau96I GGNCC 4 cut(s) 437, 466, 472, 716
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 1 cut(s) 470
SfaNI GCATC 1 cut(s) 880
SfcI CTRYAG 1 cut(s) 517
SfoI GGCGCC 1 cut(s) 258
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SinI GGWCC 3 cut(s) 466, 472, 716
SmiMI CAYNNNNRTG 3 cut(s) 57, 341, 640
Sse9I AATT 8 cut(s) 111, 588, 629, 692, 773, 814, 830, 854
SsiI CCGC 6 cut(s) 12, 304, 306, 435, 482, 893
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 3 cut(s) 558, 608, 792
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 234, 381, 798
TasI AATT 8 cut(s) 111, 588, 629, 692, 773, 814, 830, 854
TauI GCSGC 2 cut(s) 15, 438
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TseI GCWGC 2 cut(s) 91, 604
TspDTI ATGAA 5 cut(s) 15, 17, 183, 642, 823
VpaK11BI GGWCC 3 cut(s) 466, 472, 716
XapI RAATTY 2 cut(s) 629, 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 798
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.