FvH4_1g03730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Forward (+)
1996485 .. 1997225
741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03730.t1

Sequence Viewer

Length: 741 bp
ATGGTTGAGTTTGCCGGCAAACTCTACGTTCTGTCATATAAGTGGGAAAGTGTTAAATCATTTGAGGTATTTGACCCCCAACAGGGTACTTGGTCAGTTCTGCCAAGCTACCCTGATGCTGCCCGCTGCTACCCTTATTCAACTGCATCTTATGTTATTGCAGGCACCAAATTGTTTATGTCTACCAGATTGGTTAAGCCTACCCTAGACAGCTCGATTTGCTGCTTTGATTTTGCTGCCCGAGACCCAGAATGGAGGAGAGTCCCCAGCTTGGGCGGCTATTTACCAATCGCAGGCCAAGCTGTAGCGGTGGAATTGCCGCAGCCAGAACACAGTAACAAAAGGTTACTGTTTTCGGCTAGAGTTGACTACTCCGATTGTTGCAGTATAGTAGTTCATCTTATGTCCTTGGATGAAAACCAGGAAACAATCAGTGAAATTTTTCAGATGAATCTGCCGGCTGAGCTCCCTCATCAACCATGGCCAAATGACTGTCATTTCTTCCATCTAGGGGGAAACAATGTCTTCCTTGTCACCACCGCTGGTGTTGGAGAAAGCGCAAAGTCTGGGATTTATACCGGTGGTGCCGTACTGTTTCAATTCGAATTTGATATCTCCAAGGTAGACACGGACAGGAAGAATTGTTTCACTATCCAATTCCAGCCTCCTCGCATTTTCGAATACCATTCCTCTCCAGACTGTGTGTCACCGCCTGAGACACTTGGTTGCTTTCTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.58

Weight (kDa)

5.09

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 164, 584
AccI GTMKAC 2 cut(s) 182, 624
AciI CCGC 6 cut(s) 124, 276, 308, 320, 540, 710
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 2 cut(s) 438, 605
AfaI GTAC 2 cut(s) 88, 591
AfiI CCNNNNNNNGG 6 cut(s) 82, 83, 271, 272, 293, 511
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 2 cut(s) 141, 599
AhdI GACNNNNNGTC 1 cut(s) 703
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 5 cut(s) 108, 213, 270, 302, 466
AluI AGCT 5 cut(s) 108, 213, 270, 302, 466
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 2 cut(s) 237, 710
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 2 cut(s) 295, 482
ApeKI GCWGC 5 cut(s) 119, 126, 222, 236, 322
ApoI RAATTY 2 cut(s) 438, 605
AsiGI ACCGGT 1 cut(s) 578
Asp700I GAANNNNTTC 2 cut(s) 441, 644
AspLEI GCGC 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 526, 699
AsuII TTCGAA 2 cut(s) 603, 678
AvaI CYCGRG 1 cut(s) 240
BalI TGGCCA 1 cut(s) 484
BanI GGYRCC 2 cut(s) 164, 584
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 5 cut(s) 106, 113, 209, 223, 334
BccI CCATC 1 cut(s) 513
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 237, 710
BfaI CTAG 3 cut(s) 206, 360, 509
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 7 cut(s) 120, 127, 223, 237, 277, 320, 323
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 7 cut(s) 121, 128, 224, 238, 278, 321, 324
Bme1390I CCNGG 1 cut(s) 422
BmeRI GACNNNNNGTC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 166, 586
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 2 cut(s) 106, 155
BpiI GAAGAC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 2 cut(s) 603, 678
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 408, 479, 618
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 6 cut(s) 82, 83, 271, 272, 293, 511
Bse118I RCCGGY 3 cut(s) 14, 457, 578
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 3 cut(s) 408, 479, 618
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 6 cut(s) 82, 83, 271, 272, 293, 511
BseMII CTCAG 2 cut(s) 453, 705
BseRI GAGGAG 2 cut(s) 271, 657
BseXI GCAGC 5 cut(s) 106, 113, 209, 223, 334
BseYI CCCAGC 1 cut(s) 266
BshFI GGCC 2 cut(s) 297, 484
BshNI GGYRCC 2 cut(s) 164, 584
BshTI ACCGGT 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 3 cut(s) 15, 458, 579
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 6 cut(s) 82, 83, 271, 272, 293, 511
BsmAI GTCTC 2 cut(s) 237, 710
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 2 cut(s) 297, 484
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 240
Bsp119I TTCGAA 2 cut(s) 603, 678
Bsp1286I GDGCHC 1 cut(s) 468
Bsp1720I GCTNAGC 1 cut(s) 462
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 6 cut(s) 124, 276, 308, 320, 540, 710
BspANI GGCC 2 cut(s) 297, 484
BspCNI CTCAG 2 cut(s) 454, 706
BspLI GGNNCC 2 cut(s) 166, 586
BspT104I TTCGAA 2 cut(s) 603, 678
BspT107I GGYRCC 2 cut(s) 164, 584
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 3 cut(s) 14, 457, 578
BssAI RCCGGY 3 cut(s) 14, 457, 578
BssECI CCNNGG 3 cut(s) 408, 479, 618
BssT1I CCWWGG 3 cut(s) 408, 479, 618
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 5 cut(s) 335, 351, 494, 594, 701
BstBI TTCGAA 2 cut(s) 603, 678
BstC8I GCNNGC 5 cut(s) 16, 124, 163, 295, 459
BstDEI CTNAG 2 cut(s) 462, 714
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 1 cut(s) 418
BstHHI GCGC 1 cut(s) 560
BstMAI GTCTC 2 cut(s) 237, 710
BstMWI GCNNNNNNNGC 4 cut(s) 219, 276, 299, 463
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 5 cut(s) 106, 113, 209, 223, 334
BstV2I GAAGAC 1 cut(s) 517
BsuRI GGCC 2 cut(s) 297, 484
BtgI CCRYGG 1 cut(s) 479
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 5 cut(s) 16, 124, 163, 295, 459
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 3 cut(s) 14, 457, 578
Csp6I GTAC 2 cut(s) 87, 590
CspAI ACCGGT 1 cut(s) 578
CviAII CATG 1 cut(s) 480
CviQI GTAC 2 cut(s) 87, 590
DdeI CTNAG 2 cut(s) 462, 714
DriI GACNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 1 cut(s) 482
Eam1105I GACNNNNNGTC 1 cut(s) 703
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 3 cut(s) 408, 479, 618
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 613
Eco53kI GAGCTC 1 cut(s) 466
Eco88I CYCGRG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 3 cut(s) 408, 479, 618
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 3 cut(s) 408, 479, 618
FaeI CATG 1 cut(s) 483
FaiI YATR 8 cut(s) 37, 39, 153, 179, 389, 404, 481, 576
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 479
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 2 cut(s) 182, 624
Fnu4HI GCNGC 7 cut(s) 120, 127, 223, 237, 277, 320, 323
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 7 cut(s) 120, 127, 223, 237, 277, 320, 323
FspBI CTAG 3 cut(s) 206, 360, 509
GlaI GCGC 1 cut(s) 559
GluI GCNGC 7 cut(s) 120, 127, 223, 237, 277, 320, 323
GsaI CCCAGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 2 cut(s) 297, 484
HapII CCGG 3 cut(s) 15, 458, 579
HhaI GCGC 1 cut(s) 560
Hin1II CATG 1 cut(s) 483
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 2 cut(s) 261, 451
HpaII CCGG 3 cut(s) 15, 458, 579
HphI GGTGA 2 cut(s) 526, 699
Hpy166II GTNNAC 3 cut(s) 183, 367, 625
Hpy188I TCNGA 2 cut(s) 376, 447
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 3 cut(s) 183, 367, 625
HpyCH4III ACNGT 5 cut(s) 335, 351, 494, 594, 701
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 146, 161, 384
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 276, 299, 463
HpyF3I CTNAG 2 cut(s) 462, 714
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 483
HspAI GCGC 1 cut(s) 558
KroI GCCGGC 2 cut(s) 14, 457
KroNI GCCGGC 2 cut(s) 16, 459
LmnI GCTCC 1 cut(s) 471
Lsp1109I GCAGC 5 cut(s) 106, 113, 209, 223, 334
LweI GCATC 2 cut(s) 106, 155
MaeI CTAG 3 cut(s) 206, 360, 509
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 4 cut(s) 335, 345, 532, 705
MboII GAAGA 3 cut(s) 493, 517, 649
MhlI GDGCHC 1 cut(s) 468
MlsI TGGCCA 1 cut(s) 484
MluCI AATT 7 cut(s) 170, 314, 438, 599, 605, 640, 656
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 6 cut(s) 58, 249, 480, 675, 678, 700
Mox20I TGGCCA 1 cut(s) 484
MroNI GCCGGC 2 cut(s) 14, 457
MroXI GAANNNNTTC 2 cut(s) 441, 644
MscI TGGCCA 1 cut(s) 484
MseI TTAA 2 cut(s) 54, 195
MslI CAYNNNNRTG 1 cut(s) 40
Msp20I TGGCCA 1 cut(s) 484
MspA1I CMGCKG 2 cut(s) 126, 542
MspI CCGG 3 cut(s) 15, 458, 579
MspR9I CCNGG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 4 cut(s) 219, 276, 299, 463
NaeI GCCGGC 2 cut(s) 16, 459
NcoI CCATGG 1 cut(s) 479
NgoMIV GCCGGC 2 cut(s) 14, 457
NlaIII CATG 1 cut(s) 483
NlaIV GGNNCC 2 cut(s) 166, 586
NmuCI GTSAC 2 cut(s) 532, 705
NspV TTCGAA 2 cut(s) 603, 678
PdiI GCCGGC 2 cut(s) 16, 459
PdmI GAANNNNTTC 2 cut(s) 441, 644
PfeI GAWTC 1 cut(s) 451
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 7 cut(s) 121, 128, 224, 238, 278, 321, 324
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 166, 586
RsaI GTAC 2 cut(s) 88, 591
RsaNI GTAC 2 cut(s) 87, 590
RseI CAYNNNNRTG 1 cut(s) 40
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 54, 195
SatI GCNGC 7 cut(s) 120, 127, 223, 237, 277, 320, 323
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 1 cut(s) 468
SetI ASST 9 cut(s) 30, 69, 110, 215, 272, 304, 347, 468, 624
SfaNI GCATC 2 cut(s) 106, 155
SfcI CTRYAG 1 cut(s) 303
SfuI TTCGAA 2 cut(s) 603, 678
SmiMI CAYNNNNRTG 1 cut(s) 40
Sse9I AATT 7 cut(s) 170, 314, 438, 599, 605, 640, 656
SsiI CCGC 6 cut(s) 124, 276, 308, 320, 540, 710
SspMI CTAG 3 cut(s) 206, 360, 509
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 3 cut(s) 408, 479, 618
TaaI ACNGT 5 cut(s) 335, 351, 494, 594, 701
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 215, 603, 678
TasI AATT 7 cut(s) 170, 314, 438, 599, 605, 640, 656
TauI GCSGC 2 cut(s) 279, 322
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 2 cut(s) 54, 195
Tru9I TTAA 2 cut(s) 54, 195
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 2 cut(s) 532, 705
TseI GCWGC 5 cut(s) 119, 126, 222, 236, 322
Tsp45I GTSAC 2 cut(s) 532, 705
TspDTI ATGAA 3 cut(s) 386, 429, 464
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 1 cut(s) 439
XapI RAATTY 2 cut(s) 438, 605
XmiI GTMKAC 2 cut(s) 182, 624
XmnI GAANNNNTTC 2 cut(s) 441, 644
XspI CTAG 3 cut(s) 206, 360, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.