Rh2CG056200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000213
Physical Location & Seq
Forward (+)
4435737 .. 4439033
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG056200.1

Sequence Viewer

Length: 792 bp
ATGAATCCTATTTCGAACTACAGAAGGAGTAGAGTCCACTTCCCTCTGAGATCAGGAGTTAAGGCTTTCATGTATAAATACACAAACAAGGGGCCGAGGAACCCAAAGCAAACTGAGAAAAACCAAACATTTCCAATGTCCCCCAAAACCACTCTCAACCTAGCCAACAGATCCAGCGATCGGGAAGACGAACGGCGTCATCGGCTTCGACGCTGCGGTGAACCACCGCATCATAAGGCTGATAAGCACAGGAAGTCTGAGAAGAAGAAGAAGAAGAAGAAGAGAAGTGAGAAGCTGAAGTTGAACGAGGAGGAGGCTAACAAGTCTCTGTACATATGTCACATTGAGCACCACCCTGGAAGGTGGGTCGCTTATGTTGTCCGCGCCATCAACTTGTCCGATTTGTTGTTGTCATCAGAAGACGATGATGGTTTGCAATTACGGCAAGTGGGTTATAAGGCCGGGGATGAACTCCCGGGGTCTGTGGGTTGCGGTGTGTGGGGCTCCCGGATTGTTTTCGCCGCCGGCATGAAACCCTGCGGCCGTATGCCTTCATTTGATCGTCCCGACATAGTTTGGCATAGAGATGTTTACGCCTTTGAAACTGACCCCAACAAGCAGCCTCGTGATAATAGTAGAATTACCAAGATGGGTGGCACATTAGTTGAAGCCAAGTTTCTTCCTCGGATGGAGGAGGTGGGGGGCAAACTGAATATGTACACCTCAAATGAGTTTAGCCGCGGTTTTACTAAGATATTCGAGGAAACTAAGTCACTAGGATTGCCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

30.37

Weight (kDa)

9.89

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccII CGCG 2 cut(s) 384, 741
AciI CCGC 8 cut(s) 216, 227, 382, 492, 522, 540, 739, 741
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 2 cut(s) 332, 719
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 3 cut(s) 304, 602, 668
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 475
AoxI GGCC 3 cut(s) 92, 459, 541
ApeKI GCWGC 2 cut(s) 213, 619
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 4 cut(s) 463, 476, 477, 508
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 475
BanII GRGCYC 1 cut(s) 506
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 192, 426
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 200, 631
BccI CCATC 4 cut(s) 395, 422, 643, 682
BceAI ACGGC 3 cut(s) 209, 458, 528
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 4 cut(s) 463, 476, 477, 508
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 161, 776
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 5 cut(s) 214, 522, 541, 620, 739
BlsI GCNGC 5 cut(s) 215, 523, 542, 621, 740
Bme1390I CCNGG 5 cut(s) 357, 463, 476, 477, 508
BmeT110I CYCGRG 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 93, 101, 505
BmrFI CCNGG 5 cut(s) 357, 463, 476, 477, 508
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 192, 426
Bpu14I TTCGAA 1 cut(s) 14
BpuMI CCSGG 4 cut(s) 463, 476, 477, 508
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 7 cut(s) 95, 355, 462, 475, 476, 683, 739
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 524
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 7 cut(s) 95, 355, 462, 475, 476, 683, 739
BseGI GGATG 2 cut(s) 472, 693
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 3 cut(s) 38, 105, 249
BseRI GAGGAG 3 cut(s) 323, 326, 707
BseX3I CGGCCG 1 cut(s) 541
BseXI GCAGC 2 cut(s) 200, 631
Bsh1236I CGCG 2 cut(s) 384, 741
Bsh1285I CGRYCG 2 cut(s) 181, 544
BshFI GGCC 3 cut(s) 94, 461, 543
BsiEI CGRYCG 2 cut(s) 181, 544
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 4 cut(s) 462, 476, 508, 525
BslFI GGGAC 2 cut(s) 124, 549
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 2 cut(s) 124, 549
BsnI GGCC 3 cut(s) 94, 461, 543
BsoBI CYCGRG 1 cut(s) 475
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 351, 506
Bsp1407I TGTACA 2 cut(s) 330, 717
Bsp143I GATC 4 cut(s) 50, 170, 178, 559
BspACI CCGC 8 cut(s) 216, 227, 382, 492, 522, 540, 739, 741
BspANI GGCC 3 cut(s) 94, 461, 543
BspCNI CTCAG 3 cut(s) 39, 106, 250
BspFNI CGCG 2 cut(s) 384, 741
BspLI GGNNCC 3 cut(s) 93, 101, 505
BspPI GGATC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 524
BsrGI TGTACA 2 cut(s) 330, 717
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 7 cut(s) 95, 355, 462, 475, 476, 683, 739
BssMI GATC 4 cut(s) 50, 170, 178, 559
BssNI GRCGYC 1 cut(s) 196
BssSI CACGAG 1 cut(s) 624
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 196
BstAUI TGTACA 2 cut(s) 330, 717
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 5 cut(s) 47, 114, 258, 750, 768
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 2 cut(s) 472, 693
BstFNI CGCG 2 cut(s) 384, 741
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 4 cut(s) 53, 173, 181, 562
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 4 cut(s) 50, 170, 178, 559
BstMCI CGRYCG 2 cut(s) 181, 544
BstMWI GCNNNNNNNGC 2 cut(s) 202, 442
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 5 cut(s) 355, 461, 474, 475, 506
BstSFI CTRYAG 1 cut(s) 19
BstUI CGCG 2 cut(s) 384, 741
BstV1I GCAGC 2 cut(s) 200, 631
BstV2I GAAGAC 2 cut(s) 192, 426
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BstZI CGGCCG 1 cut(s) 541
BsuRI GGCC 3 cut(s) 94, 461, 543
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 2 cut(s) 472, 693
BtsIMutI CAGTG 1 cut(s) 787
Cac8I GCNNGC 1 cut(s) 526
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 92
Cfr42I CCGCGG 1 cut(s) 742
Cfr9I CCCGGG 1 cut(s) 475
CseI GACGC 2 cut(s) 185, 219
Csp6I GTAC 2 cut(s) 331, 718
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 2 cut(s) 70, 529
CviQI GTAC 2 cut(s) 331, 718
DdeI CTNAG 5 cut(s) 47, 114, 258, 750, 768
DpnI GATC 4 cut(s) 52, 172, 180, 561
DpnII GATC 4 cut(s) 50, 170, 178, 559
EaeI YGGCCR 1 cut(s) 541
EagI CGGCCG 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EclXI CGGCCG 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 506
Eco52I CGGCCG 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 506
FaeI CATG 2 cut(s) 73, 532
FaqI GGGAC 2 cut(s) 124, 549
FatI CATG 2 cut(s) 69, 528
FauNDI CATATG 1 cut(s) 335
Fnu4HI GCNGC 5 cut(s) 214, 522, 541, 620, 739
FokI GGATG 2 cut(s) 479, 700
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 5 cut(s) 214, 522, 541, 620, 739
FspBI CTAG 2 cut(s) 161, 776
GlaI GCGC 1 cut(s) 385
GluI GCNGC 5 cut(s) 214, 522, 541, 620, 739
HaeIII GGCC 3 cut(s) 94, 461, 543
HapII CCGG 4 cut(s) 462, 476, 508, 525
HgaI GACGC 2 cut(s) 185, 219
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 2 cut(s) 73, 532
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 2 cut(s) 4, 33
HpaII CCGG 4 cut(s) 462, 476, 508, 525
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 4 cut(s) 37, 221, 592, 720
Hpy188I TCNGA 5 cut(s) 48, 259, 400, 418, 687
Hpy188III TCNNGA 4 cut(s) 54, 182, 566, 626
Hpy8I GTNNAC 4 cut(s) 37, 221, 592, 720
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 3 cut(s) 18, 354, 561
HpyCH4V TGCA 1 cut(s) 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 442
HpyF3I CTNAG 5 cut(s) 47, 114, 258, 750, 768
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 2 cut(s) 73, 532
HspAI GCGC 1 cut(s) 384
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
KspI CCGCGG 1 cut(s) 742
Kzo9I GATC 4 cut(s) 50, 170, 178, 559
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 2 cut(s) 200, 631
LweI GCATC 1 cut(s) 238
MaeI CTAG 2 cut(s) 161, 776
MaeIII GTNAC 2 cut(s) 338, 771
MalI GATC 4 cut(s) 52, 172, 180, 561
MboI GATC 4 cut(s) 50, 170, 178, 559
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 351, 506
MluCI AATT 2 cut(s) 437, 639
MlyI GAGTC 1 cut(s) 42
MroNI GCCGGC 1 cut(s) 524
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 741
MspI CCGG 4 cut(s) 462, 476, 508, 525
MspR9I CCNGG 5 cut(s) 357, 463, 476, 477, 508
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 2 cut(s) 384, 741
MwoI GCNNNNNNNGC 2 cut(s) 202, 442
NaeI GCCGGC 1 cut(s) 526
NciI CCSGG 4 cut(s) 463, 476, 477, 508
NdeI CATATG 1 cut(s) 335
NdeII GATC 4 cut(s) 50, 170, 178, 559
NgoMIV GCCGGC 1 cut(s) 524
NlaIII CATG 2 cut(s) 73, 532
NlaIV GGNNCC 3 cut(s) 93, 101, 505
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 338, 771
NspV TTCGAA 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 506
PkrI GCNGC 5 cut(s) 215, 523, 542, 621, 740
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 93, 101, 505
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 170
PvuI CGATCG 1 cut(s) 181
RsaI GTAC 2 cut(s) 332, 719
RsaNI GTAC 2 cut(s) 331, 718
RseI CAYNNNNRTG 1 cut(s) 585
SacII CCGCGG 1 cut(s) 742
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 5 cut(s) 214, 522, 541, 620, 739
Sau3AI GATC 4 cut(s) 50, 170, 178, 559
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 5 cut(s) 357, 463, 476, 477, 508
SduI GDGCHC 2 cut(s) 351, 506
SetI ASST 5 cut(s) 162, 297, 365, 699, 725
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 19
Sfr303I CCGCGG 1 cut(s) 742
SfuI TTCGAA 1 cut(s) 14
SgrBI CCGCGG 1 cut(s) 742
SmaI CCCGGG 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 585
Sse9I AATT 2 cut(s) 437, 639
SsiI CCGC 8 cut(s) 216, 227, 382, 492, 522, 540, 739, 741
SspMI CTAG 2 cut(s) 161, 776
StyD4I CCNGG 5 cut(s) 355, 461, 474, 475, 506
TaqI TCGA 3 cut(s) 14, 208, 759
TasI AATT 2 cut(s) 437, 639
TatI WGTACW 2 cut(s) 330, 717
TauI GCSGC 3 cut(s) 524, 543, 741
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 2 cut(s) 338, 771
TseI GCWGC 2 cut(s) 213, 619
Tsp45I GTSAC 2 cut(s) 338, 771
TspDTI ATGAA 5 cut(s) 17, 58, 483, 543, 545
TspMI CCCGGG 1 cut(s) 475
XmaI CCCGGG 1 cut(s) 475
XspI CTAG 2 cut(s) 161, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.