Rmu_sc0005230.1_g000003

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005230.1
OG0000213
Physical Location & Seq
Reverse (-)
15766 .. 16662
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005230.1_g000003.1.cds

Sequence Viewer

Length: 897 bp
atgtcccccaaaagatatctcttagccaccggcaatggcgaagaagagaggcatcatcgtagccggcatcagcatgaccgtgtacatcggcatgggcatcggcatgacggtggacattggcacaagtcgcatgagcataggcgtgatggatgggagccgatgaagaagcagaggatggagaaggtgaagaatacatcgaagaagttaacgtttgagttggaggaggaggctgctaacaagtcactctacatatgtttcctggaacacaggagagattgggttgcttatgttatccacgccatcaaattgtccgatttgttatcatccggcgagcgattgagattacggcaagtgggttttacggccggggatcatctccccggaactgtaggttccagtgttatgggctcccaaattcttttagcgggcggcttgagacccaacatcccttatggctttggggcacatcgtcatgactcagctgtttggcatagaaatgtttatgcctttgaaactgaccccaacaagcagcctcatgataatagtacaatcaggaagcttgatgccactttacaagcagccaagttgagccctatggtggtggagctggggggcaaattgtacgctctttcctataggctggtcggtgatcctccttcatttgaggtatttgatcccaaaatggggacatggtctgctttgccacagcccccatttttcgaacctggctctcgatattacgaacatgctcccttctcttatgcaattactagcaccaagatgtttgtctcccataaaaaatgtcccgtgttctgctttgacgttgcccacccagatagagaatggagaatagtccctactatgtgtcaaggcggagagagaatagtccctaaatag

Protein Analysis

298

Amino Acids

34.21

Weight (kDa)

9.42

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 425, 429, 873
AclI AACGTT 1 cut(s) 209
AclWI GGATC 3 cut(s) 378, 644, 668
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 414
AfaI GTAC 3 cut(s) 84, 547, 623
AfiI CCNNNNNNNGG 3 cut(s) 598, 683, 684
AgsI TTSAA 1 cut(s) 512
AjnI CCWGG 2 cut(s) 258, 724
AluBI AGCT 3 cut(s) 482, 559, 607
AluI AGCT 3 cut(s) 482, 559, 607
Alw26I GTCTC 2 cut(s) 430, 793
AlwI GGATC 3 cut(s) 378, 644, 668
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 3 cut(s) 230, 529, 578
ApoI RAATTY 1 cut(s) 414
AsuC2I CCSGG 2 cut(s) 367, 381
AsuHPI GGTGA 2 cut(s) 196, 659
AsuII TTCGAA 1 cut(s) 720
BaeGI GKGCMC 1 cut(s) 466
BanII GRGCYC 2 cut(s) 410, 593
BbvI GCAGC 3 cut(s) 217, 541, 590
BccI CCATC 4 cut(s) 140, 144, 169, 308
BceAI ACGGC 2 cut(s) 362, 378
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 260, 726
BcnI CCSGG 2 cut(s) 367, 381
BcoDI GTCTC 2 cut(s) 430, 793
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 2 cut(s) 387, 634
BisI GCNGC 4 cut(s) 231, 430, 530, 579
BlsI GCNGC 4 cut(s) 232, 431, 531, 580
Bme1390I CCNGG 4 cut(s) 260, 367, 381, 726
BmiI GGNNCC 3 cut(s) 156, 394, 409
BmrFI CCNGG 4 cut(s) 260, 367, 381, 726
BmsI GCATC 4 cut(s) 61, 76, 106, 553
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 367, 381
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 366, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 598, 683, 684
Bse118I RCCGGY 2 cut(s) 29, 63
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 260, 726
BseDI CCNNGG 2 cut(s) 366, 379
BseGI GGATG 4 cut(s) 155, 180, 323, 444
BseLI CCNNNNNNNGG 3 cut(s) 598, 683, 684
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 2 cut(s) 236, 239
BseSI GKGCMC 1 cut(s) 466
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 3 cut(s) 217, 541, 590
BseYI CCCAGC 1 cut(s) 607
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 366
BsiSI CCGG 5 cut(s) 30, 64, 327, 366, 381
BslFI GGGAC 4 cut(s) 700, 789, 839, 872
BslI CCNNNNNNNGG 3 cut(s) 598, 683, 684
BsmAI GTCTC 2 cut(s) 430, 793
BsmFI GGGAC 4 cut(s) 700, 789, 839, 872
BsnI GGCC 1 cut(s) 365
Bso31I GGTCTC 1 cut(s) 430
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 3 cut(s) 410, 466, 593
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 370, 649, 673
BspACI CCGC 3 cut(s) 425, 429, 873
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 491
BspHI TCATGA 2 cut(s) 472, 535
BspLI GGNNCC 3 cut(s) 156, 394, 409
BspPI GGATC 3 cut(s) 378, 644, 668
BspT104I TTCGAA 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 2 cut(s) 29, 63
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 2 cut(s) 29, 63
BssECI CCNNGG 2 cut(s) 366, 379
BssMI GATC 3 cut(s) 370, 649, 673
Bst2UI CCWGG 2 cut(s) 260, 726
Bst4CI ACNGT 3 cut(s) 80, 110, 388
Bst6I CTCTTC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 3 cut(s) 65, 332, 427
BstDEI CTNAG 2 cut(s) 22, 478
BstF5I GGATG 4 cut(s) 155, 180, 323, 444
BstKTI GATC 3 cut(s) 373, 652, 676
BstMAI GTCTC 2 cut(s) 430, 793
BstMBI GATC 3 cut(s) 370, 649, 673
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 2 cut(s) 260, 726
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 4 cut(s) 258, 365, 379, 724
BstSFI CTRYAG 2 cut(s) 387, 634
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 3 cut(s) 217, 541, 590
BstXI CCANNNNNNTGG 1 cut(s) 403
BstZI CGGCCG 1 cut(s) 363
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 4 cut(s) 155, 180, 323, 444
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 65, 332, 427
CciI TCATGA 2 cut(s) 472, 535
Cfr10I RCCGGY 2 cut(s) 29, 63
Csp6I GTAC 3 cut(s) 83, 546, 622
CviAII CATG 8 cut(s) 74, 92, 104, 131, 473, 536, 690, 746
CviQI GTAC 3 cut(s) 83, 546, 622
DdeI CTNAG 2 cut(s) 22, 478
DpnI GATC 3 cut(s) 372, 651, 675
DpnII GATC 3 cut(s) 370, 649, 673
EaeI YGGCCR 1 cut(s) 363
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EciI GGCGGA 1 cut(s) 888
EclXI CGGCCG 1 cut(s) 363
Eco24I GRGCYC 2 cut(s) 410, 593
Eco31I GGTCTC 1 cut(s) 430
Eco32I GATATC 1 cut(s) 17
Eco52I CGGCCG 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 258, 724
EcoRV GATATC 1 cut(s) 17
EcoT38I GRGCYC 2 cut(s) 410, 593
FaeI CATG 8 cut(s) 77, 95, 107, 134, 476, 539, 693, 749
FaqI GGGAC 4 cut(s) 700, 789, 839, 872
FatI CATG 8 cut(s) 73, 91, 103, 130, 472, 535, 689, 745
FauI CCCGC 1 cut(s) 418
FauNDI CATATG 1 cut(s) 251
Fnu4HI GCNGC 4 cut(s) 231, 430, 530, 579
FokI GGATG 4 cut(s) 162, 187, 310, 431
FriOI GRGCYC 2 cut(s) 410, 593
Fsp4HI GCNGC 4 cut(s) 231, 430, 530, 579
FspBI CTAG 1 cut(s) 771
GluI GCNGC 4 cut(s) 231, 430, 530, 579
GsaI CCCAGC 1 cut(s) 611
HaeIII GGCC 1 cut(s) 365
HapII CCGG 5 cut(s) 30, 64, 327, 366, 381
Hin1II CATG 8 cut(s) 77, 95, 107, 134, 476, 539, 693, 749
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 1 cut(s) 476
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 5 cut(s) 30, 64, 327, 366, 381
HphI GGTGA 2 cut(s) 196, 659
Hpy166II GTNNAC 3 cut(s) 83, 113, 207
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 4 cut(s) 473, 536, 553, 732
Hpy8I GTNNAC 3 cut(s) 83, 113, 207
HpyAV CCTTC 3 cut(s) 175, 666, 763
HpyCH4III ACNGT 3 cut(s) 80, 110, 388
HpyCH4IV ACGT 2 cut(s) 209, 822
HpyCH4V TGCA 1 cut(s) 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 22, 478
HpySE526I ACGT 2 cut(s) 209, 822
Hsp92II CATG 8 cut(s) 77, 95, 107, 134, 476, 539, 693, 749
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 370, 649, 673
LmnI GCTCC 4 cut(s) 154, 413, 604, 754
Lsp1109I GCAGC 3 cut(s) 217, 541, 590
LweI GCATC 4 cut(s) 61, 76, 106, 553
MaeI CTAG 1 cut(s) 771
MaeII ACGT 2 cut(s) 209, 822
MaeIII GTNAC 1 cut(s) 240
MalI GATC 3 cut(s) 372, 651, 675
MboI GATC 3 cut(s) 370, 649, 673
MboII GAAGA 5 cut(s) 53, 56, 175, 199, 211
MhlI GDGCHC 3 cut(s) 410, 466, 593
MluCI AATT 4 cut(s) 305, 414, 617, 765
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 8 cut(s) 42, 165, 214, 217, 220, 543, 658, 663
MroNI GCCGGC 1 cut(s) 63
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 9 cut(s) 72, 78, 90, 102, 108, 141, 471, 495, 779
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 5 cut(s) 30, 64, 327, 366, 381
MspR9I CCNGG 4 cut(s) 260, 367, 381, 726
MvaI CCWGG 2 cut(s) 260, 726
MwoI GCNNNNNNNGC 1 cut(s) 127
NaeI GCCGGC 1 cut(s) 65
NciI CCSGG 2 cut(s) 367, 381
NdeI CATATG 1 cut(s) 251
NdeII GATC 3 cut(s) 370, 649, 673
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 8 cut(s) 77, 95, 107, 134, 476, 539, 693, 749
NlaIV GGNNCC 3 cut(s) 156, 394, 409
NmuCI GTSAC 1 cut(s) 240
NspI RCATGY 1 cut(s) 749
NspV TTCGAA 1 cut(s) 720
PagI TCATGA 2 cut(s) 472, 535
PdiI GCCGGC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 691
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 4 cut(s) 232, 431, 531, 580
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 258, 724
PspFI CCCAGC 1 cut(s) 607
PspGI CCWGG 2 cut(s) 258, 724
PspN4I GGNNCC 3 cut(s) 156, 394, 409
PsyI GACNNNGTC 1 cut(s) 691
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 3 cut(s) 84, 547, 623
RsaNI GTAC 3 cut(s) 83, 546, 622
RseI CAYNNNNRTG 9 cut(s) 72, 78, 90, 102, 108, 141, 471, 495, 779
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 4 cut(s) 231, 430, 530, 579
Sau3AI GATC 3 cut(s) 370, 649, 673
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 4 cut(s) 260, 367, 381, 726
SduI GDGCHC 3 cut(s) 410, 466, 593
SetI ASST 9 cut(s) 186, 212, 394, 484, 561, 609, 669, 727, 825
SfaNI GCATC 4 cut(s) 61, 76, 106, 553
SfcI CTRYAG 2 cut(s) 387, 634
SfuI TTCGAA 1 cut(s) 720
SmiMI CAYNNNNRTG 9 cut(s) 72, 78, 90, 102, 108, 141, 471, 495, 779
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 4 cut(s) 305, 414, 617, 765
SsiI CCGC 3 cut(s) 425, 429, 873
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 4 cut(s) 258, 365, 379, 724
TaaI ACNGT 3 cut(s) 80, 110, 388
TaiI ACGT 2 cut(s) 212, 825
TaqI TCGA 3 cut(s) 197, 720, 733
TasI AATT 4 cut(s) 305, 414, 617, 765
TatI WGTACW 2 cut(s) 82, 545
TauI GCSGC 1 cut(s) 432
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 3 cut(s) 230, 529, 578
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 176, 648
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 691
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XspI CTAG 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.