Rh1BG086600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000213
Physical Location & Seq
Reverse (-)
13708409 .. 13709415
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG086600.1

Sequence Viewer

Length: 537 bp
ATGTCCCCCAAAAAATGTCTTAACTTAGCCGAAGCCAGCGATGGCGAAGAAAGAAGGCATCGTCTGGTTCGGCATTGCTGCCCTCTTCAGAAGCATAAGAAGCACAGGTGTGATGGATGCGTGATGAAGAAGGAGAAGAAGAAGAAAATAAGAGTATCAGAGAAGGTGAAGAAGACAACGAAGAAGTTGAAGCTGGAGGAGGAGGAGGCTAAGAAGTCACTCTACATATGTTTCGTTGAACAACGCGAGGGTGGGAGCGTCGCTATTGTTGTTCGTACCATCAAATTATCCGACTTGTTATCCTCCGACGATGAAGAATTGCAATTGCGGCAAGTGGCTTATAAGGCCGGGGAAGATGTTCCCGATTTTGTTGGTTGTGCTGTTTTCGGCTCCCAAATCATTTTCGCCGGTGGCGTGAGCCCCAGCTTGGGTTCCGGTGACGGATTTCCGCCAATAAGTTCTGAACTCTGGAATAGAGATGTTCATGCCTTCGAGGTTCATGACAATGTTTTCAGGAAGATGGATGCGACTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.03

Weight (kDa)

8.92

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 328, 449
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 427, 428
AgsI TTSAA 2 cut(s) 190, 239
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 2 cut(s) 193, 426
AluI AGCT 2 cut(s) 193, 426
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 178, 449
BanII GRGCYC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 65
BccI CCATC 4 cut(s) 35, 107, 287, 514
BcnI CCSGG 1 cut(s) 349
BisI GCNGC 2 cut(s) 79, 329
BlsI GCNGC 2 cut(s) 80, 330
Bme1390I CCNGG 1 cut(s) 349
BmiI GGNNCC 2 cut(s) 391, 433
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 3 cut(s) 67, 107, 514
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 428
Bse118I RCCGGY 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 122, 529
BseLI CCNNNNNNNGG 2 cut(s) 427, 428
BseMI GCAATG 1 cut(s) 73
BseRI GAGGAG 3 cut(s) 212, 215, 218
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 3 cut(s) 348, 408, 435
BslI CCNNNNNNNGG 2 cut(s) 427, 428
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 422
BspACI CCGC 2 cut(s) 328, 449
BspANI GGCC 1 cut(s) 347
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 391, 433
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 25, 210
BstF5I GGATG 2 cut(s) 122, 529
BstFNI CGCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 3 cut(s) 100, 328, 344
BstSCI CCNGG 1 cut(s) 347
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 347
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 122, 529
Cac8I GCNNGC 1 cut(s) 37
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 407
CseI GACGC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 485, 500
CviJI RGCY 9 cut(s) 29, 35, 193, 209, 338, 347, 390, 420, 426
CviKI_1 RGCY 9 cut(s) 29, 35, 193, 209, 338, 347, 390, 420, 426
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 2 cut(s) 25, 210
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 422
FaeI CATG 2 cut(s) 488, 503
FaiI YATR 7 cut(s) 96, 227, 229, 342, 486, 501, 535
FatI CATG 2 cut(s) 484, 499
FauNDI CATATG 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 79, 329
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 2 cut(s) 79, 329
GluI GCNGC 2 cut(s) 79, 329
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 347
HapII CCGG 3 cut(s) 348, 408, 435
HgaI GACGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 488, 503
HpaII CCGG 3 cut(s) 348, 408, 435
HphI GGTGA 2 cut(s) 178, 449
Hpy188I TCNGA 5 cut(s) 90, 160, 292, 307, 463
Hpy188III TCNNGA 4 cut(s) 362, 469, 500, 514
Hpy99I CGWCG 2 cut(s) 263, 311
HpyAV CCTTC 4 cut(s) 48, 124, 157, 499
HpyCH4V TGCA 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 328, 344
HpyF3I CTNAG 2 cut(s) 25, 210
Hsp92II CATG 2 cut(s) 488, 503
LmnI GCTCC 2 cut(s) 255, 395
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 3 cut(s) 67, 107, 514
MaeIII GTNAC 2 cut(s) 216, 437
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 3 cut(s) 284, 317, 323
MmeI TCCRAC 2 cut(s) 315, 330
MnlI CCTC 8 cut(s) 93, 190, 193, 196, 199, 241, 313, 487
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 2 cut(s) 108, 504
MspI CCGG 3 cut(s) 348, 408, 435
MspR9I CCNGG 1 cut(s) 349
MunI CAATTG 1 cut(s) 323
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 100, 328, 344
NciI CCSGG 1 cut(s) 349
NdeI CATATG 1 cut(s) 227
NlaIII CATG 2 cut(s) 488, 503
NlaIV GGNNCC 2 cut(s) 391, 433
NmuCI GTSAC 2 cut(s) 216, 437
OliI CACNNNNGTG 1 cut(s) 108
PagI TCATGA 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 357
PkrI GCNGC 2 cut(s) 80, 330
PsiI TTATAA 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 391, 433
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 2 cut(s) 108, 504
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 79, 329
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 1 cut(s) 422
SetI ASST 5 cut(s) 110, 168, 195, 428, 498
SfaNI GCATC 3 cut(s) 67, 107, 514
SgrAI CRCCGGYG 1 cut(s) 407
SmiMI CAYNNNNRTG 2 cut(s) 108, 504
Sse9I AATT 3 cut(s) 284, 317, 323
SsiI CCGC 2 cut(s) 328, 449
StyD4I CCNGG 1 cut(s) 347
TaqI TCGA 1 cut(s) 492
TasI AATT 3 cut(s) 284, 317, 323
TauI GCSGC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 2 cut(s) 216, 437
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 2 cut(s) 216, 437
TspDTI ATGAA 4 cut(s) 140, 327, 473, 488
TspGWI ACGGA 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.