Rh2AG054700

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000213
Physical Location & Seq
Forward (+)
4329088 .. 4330305
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG054700.1

Sequence Viewer

Length: 609 bp
ATGGGTTGCGGTGTGTGGGGATATCGGATTGTTTTCGCCACCGGCATGAAACCCTGCGGCCGTATGCCTTCATTTGATCGTCCCGACATAGTTTGGCATAAAGATGTTTACGCCTTTGAGACTGACGCCAACAAGCACAAGCAGCCTCGTGATAATACTCATAATAGTAGAATTACCAAGATGGGTGGCACATTAGTTGAAGCCAAGTTTCGTCCTCTGATGGAGGAGGTGGGGGGCAAACTGTATGCACTTTCATATAGGCTGGTGGCTGATCCTCCCTCATTTGAGGTATTCGACCCGAAAGTGGGGAGTTGGGCGCCCCTGCCCCAGCCTCCATTCTTCAAACGTCATGGTCAGTATAACCGCGGTGGCTTCCTCTCTTATGCAGTTACTGGCACCAAGATGTTTGTGTCTCAGGAGAGATGTCCCGTCTTCTGTTTTGATGTAGCTCACCCAGACAGAGAATGGAGATTAGTCTCTTCTATGTGCCAACACAGCCCTTTTCCTTTTAAAAACAAGGCTTTGGTCCTGGACCTACCGGCGGGTGCTGATGACAAGAAGAAGATAATATGTGGCTGGTTGGATTACGGGGTAGCTGGTGGGTATTGA

Protein Analysis

202

Amino Acids

22.83

Weight (kDa)

9.11

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 61 - 174 3.6e-13 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 316, 395
AccII CGCG 1 cut(s) 366
AciI CCGC 5 cut(s) 9, 57, 364, 366, 542
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 2 cut(s) 126, 317
AfiI CCNNNNNNNGG 3 cut(s) 304, 305, 541
AgsI TTSAA 2 cut(s) 200, 343
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 2 cut(s) 449, 596
AluI AGCT 2 cut(s) 449, 596
Alw26I GTCTC 3 cut(s) 113, 417, 481
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 526, 532
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 2 cut(s) 526, 532
BanI GGYRCC 2 cut(s) 316, 395
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 175, 214
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 530
BcoDI GTCTC 3 cut(s) 113, 417, 481
BfoI RGCGCY 1 cut(s) 320
BisI GCNGC 2 cut(s) 58, 143
BlsI GCNGC 2 cut(s) 59, 144
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 2 cut(s) 526, 532
BmgT120I GGNCC 2 cut(s) 526, 532
BmiI GGNNCC 2 cut(s) 318, 397
BmrFI CCNGG 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 424
BsaHI GRCGYC 2 cut(s) 126, 317
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 305, 541
Bse118I RCCGGY 2 cut(s) 41, 538
Bse1I ACTGG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 1 cut(s) 364
BseLI CCNNNNNNNGG 3 cut(s) 304, 305, 541
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 239
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 366
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 2 cut(s) 316, 395
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 42, 539
BslFI GGGAC 2 cut(s) 66, 411
BslI CCNNNNNNNGG 3 cut(s) 304, 305, 541
BsmAI GTCTC 3 cut(s) 113, 417, 481
BsmFI GGGAC 2 cut(s) 66, 411
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 76, 271
BspACI CCGC 5 cut(s) 9, 57, 364, 366, 542
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 318, 397
BspPI GGATC 1 cut(s) 266
BspT107I GGYRCC 2 cut(s) 316, 395
BsrFI RCCGGY 2 cut(s) 41, 538
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 2 cut(s) 41, 538
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 2 cut(s) 76, 271
BssNI GRCGYC 2 cut(s) 126, 317
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 484
BstACI GRCGYC 2 cut(s) 126, 317
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 79, 274
BstMAI GTCTC 3 cut(s) 113, 417, 481
BstMBI GATC 2 cut(s) 76, 271
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 142, 495
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 528
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 424
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 364
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 2 cut(s) 41, 538
Cfr13I GGNCC 2 cut(s) 526, 532
Cfr42I CCGCGG 1 cut(s) 367
CseI GACGC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 2 cut(s) 46, 350
DdeI CTNAG 1 cut(s) 414
DinI GGCGCC 1 cut(s) 318
DpnI GATC 2 cut(s) 78, 273
DpnII GATC 2 cut(s) 76, 271
DraI TTTAAA 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
EclXI CGGCCG 1 cut(s) 58
Eco32I GATATC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 526, 532
Eco52I CGGCCG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 528
EcoRV GATATC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
FaeI CATG 2 cut(s) 49, 353
FaqI GGGAC 2 cut(s) 66, 411
FatI CATG 2 cut(s) 45, 349
FauI CCCGC 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 58, 143
Fsp4HI GCNGC 2 cut(s) 58, 143
GlaI GCGC 1 cut(s) 318
GluI GCNGC 2 cut(s) 58, 143
GsaI CCCAGC 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 1 cut(s) 60
HapII CCGG 2 cut(s) 42, 539
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 2 cut(s) 126, 317
Hin1II CATG 2 cut(s) 49, 353
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HpaII CCGG 2 cut(s) 42, 539
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 27, 219
Hpy188III TCNNGA 3 cut(s) 83, 149, 416
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 2 cut(s) 248, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 495
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 346
Hsp92I GRCGYC 2 cut(s) 126, 317
Hsp92II CATG 2 cut(s) 49, 353
HspAI GCGC 1 cut(s) 317
KasI GGCGCC 1 cut(s) 316
KspI CCGCGG 1 cut(s) 367
Kzo9I GATC 2 cut(s) 76, 271
Lsp1109I GCAGC 1 cut(s) 154
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 78, 273
MboI GATC 2 cut(s) 76, 271
MboII GAAGA 5 cut(s) 331, 424, 471, 571, 574
MluCI AATT 1 cut(s) 171
Mly113I GGCGCC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 561
MnlI CCTC 9 cut(s) 156, 217, 220, 225, 280, 285, 289, 342, 386
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 3 cut(s) 44, 102, 401
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 2 cut(s) 42, 539
MspR9I CCNGG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 142, 495
NarI GGCGCC 1 cut(s) 317
NdeII GATC 2 cut(s) 76, 271
NlaIII CATG 2 cut(s) 49, 353
NlaIV GGNNCC 2 cut(s) 318, 397
PfoI TCCNGGA 1 cut(s) 528
PkrI GCNGC 2 cut(s) 59, 144
PluTI GGCGCC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 2 cut(s) 318, 397
PspPI GGNCC 2 cut(s) 526, 532
PstNI CAGNNNCTG 1 cut(s) 392
RseI CAYNNNNRTG 3 cut(s) 44, 102, 401
SacII CCGCGG 1 cut(s) 367
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 2 cut(s) 58, 143
Sau3AI GATC 2 cut(s) 76, 271
Sau96I GGNCC 2 cut(s) 526, 532
ScrFI CCNGG 1 cut(s) 530
SetI ASST 6 cut(s) 231, 291, 349, 451, 537, 598
SfoI GGCGCC 1 cut(s) 318
Sfr303I CCGCGG 1 cut(s) 367
SgrBI CCGCGG 1 cut(s) 367
SinI GGWCC 2 cut(s) 526, 532
SmiMI CAYNNNNRTG 3 cut(s) 44, 102, 401
Sse9I AATT 1 cut(s) 171
SsiI CCGC 5 cut(s) 9, 57, 364, 366, 542
SspDI GGCGCC 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 171
TauI GCSGC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 60, 62, 243
VpaK11BI GGWCC 2 cut(s) 526, 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.