RNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 273 |
| AciI | CCGC | 4 cut(s) | 19, 40, 309, 342 |
| AclWI | GGATC | 2 cut(s) | 315, 328 |
| AcoI | YGGCCR | 1 cut(s) | 535 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AcuI | CTGAAG | 1 cut(s) | 355 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 572 |
| AflIII | ACRYGT | 1 cut(s) | 150 |
| AgsI | TTSAA | 3 cut(s) | 109, 332, 422 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 101, 133 |
| AluBI | AGCT | 4 cut(s) | 124, 357, 448, 496 |
| AluI | AGCT | 4 cut(s) | 124, 357, 448, 496 |
| AlwI | GGATC | 2 cut(s) | 315, 328 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| AoxI | GGCC | 1 cut(s) | 535 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| AsuC2I | CCSGG | 2 cut(s) | 294, 295 |
| AsuHPI | GGTGA | 2 cut(s) | 146, 328 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| BaeGI | GKGCMC | 1 cut(s) | 168 |
| BamHI | GGATCC | 1 cut(s) | 320 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| BccI | CCATC | 4 cut(s) | 65, 209, 481, 546 |
| BceAI | ACGGC | 2 cut(s) | 275, 382 |
| BcnI | CCSGG | 2 cut(s) | 294, 295 |
| BfaI | CTAG | 2 cut(s) | 161, 497 |
| BfmI | CTRYAG | 1 cut(s) | 523 |
| BisI | GCNGC | 1 cut(s) | 343 |
| BlsI | GCNGC | 1 cut(s) | 344 |
| Bme1390I | CCNGG | 2 cut(s) | 294, 295 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmiI | GGNNCC | 1 cut(s) | 322 |
| BmrFI | CCNGG | 2 cut(s) | 294, 295 |
| BmsI | GCATC | 2 cut(s) | 295, 442 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| BpmI | CTGGAG | 1 cut(s) | 146 |
| BpuMI | CCSGG | 2 cut(s) | 294, 295 |
| BsaJI | CCNNGG | 2 cut(s) | 292, 293 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 572 |
| Bse118I | RCCGGY | 1 cut(s) | 338 |
| BseDI | CCNNGG | 2 cut(s) | 292, 293 |
| BseGI | GGATG | 1 cut(s) | 538 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 572 |
| BseMII | CTCAG | 1 cut(s) | 405 |
| BseRI | GAGGAG | 1 cut(s) | 143 |
| BseSI | GKGCMC | 1 cut(s) | 168 |
| BseYI | CCCAGC | 1 cut(s) | 353 |
| BshFI | GGCC | 1 cut(s) | 537 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BsiSI | CCGG | 2 cut(s) | 294, 339 |
| BslFI | GGGAC | 1 cut(s) | 254 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 572 |
| BsmFI | GGGAC | 1 cut(s) | 254 |
| BsnI | GGCC | 1 cut(s) | 537 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp1286I | GDGCHC | 1 cut(s) | 168 |
| Bsp143I | GATC | 2 cut(s) | 320, 438 |
| BspACI | CCGC | 4 cut(s) | 19, 40, 309, 342 |
| BspANI | GGCC | 1 cut(s) | 537 |
| BspCNI | CTCAG | 1 cut(s) | 404 |
| BspLI | GGNNCC | 1 cut(s) | 322 |
| BspPI | GGATC | 2 cut(s) | 315, 328 |
| BsrFI | RCCGGY | 1 cut(s) | 338 |
| BssAI | RCCGGY | 1 cut(s) | 338 |
| BssECI | CCNNGG | 2 cut(s) | 292, 293 |
| BssMI | GATC | 2 cut(s) | 320, 438 |
| Bst4CI | ACNGT | 1 cut(s) | 210 |
| BstC8I | GCNNGC | 1 cut(s) | 44 |
| BstDEI | CTNAG | 1 cut(s) | 391 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 570 |
| BstF5I | GGATG | 1 cut(s) | 538 |
| BstKTI | GATC | 2 cut(s) | 323, 441 |
| BstMBI | GATC | 2 cut(s) | 320, 438 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 259, 275 |
| BstNSI | RCATGY | 1 cut(s) | 154 |
| BstSCI | CCNGG | 2 cut(s) | 292, 293 |
| BstSFI | CTRYAG | 1 cut(s) | 523 |
| BstSLI | GKGCMC | 1 cut(s) | 168 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 320 |
| BstYI | RGATCY | 1 cut(s) | 320 |
| BsuRI | GGCC | 1 cut(s) | 537 |
| BtsCI | GGATG | 1 cut(s) | 538 |
| BtsI | GCAGTG | 2 cut(s) | 28, 248 |
| BtsIMutI | CAGTG | 2 cut(s) | 28, 248 |
| Cac8I | GCNNGC | 1 cut(s) | 44 |
| Cfr10I | RCCGGY | 1 cut(s) | 338 |
| Cfr9I | CCCGGG | 1 cut(s) | 293 |
| CviAII | CATG | 3 cut(s) | 68, 151, 346 |
| DdeI | CTNAG | 1 cut(s) | 391 |
| DpnI | GATC | 2 cut(s) | 322, 440 |
| DpnII | GATC | 2 cut(s) | 320, 438 |
| EaeI | YGGCCR | 1 cut(s) | 535 |
| Eco57I | CTGAAG | 1 cut(s) | 355 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 570 |
| EcoRI | GAATTC | 1 cut(s) | 332 |
| FaeI | CATG | 3 cut(s) | 71, 154, 349 |
| FaqI | GGGAC | 1 cut(s) | 254 |
| FatI | CATG | 3 cut(s) | 67, 150, 345 |
| Fnu4HI | GCNGC | 1 cut(s) | 343 |
| FokI | GGATG | 1 cut(s) | 525 |
| Fsp4HI | GCNGC | 1 cut(s) | 343 |
| FspBI | CTAG | 2 cut(s) | 161, 497 |
| GluI | GCNGC | 1 cut(s) | 343 |
| GsaI | CCCAGC | 1 cut(s) | 357 |
| GsuI | CTGGAG | 1 cut(s) | 146 |
| HaeIII | GGCC | 1 cut(s) | 537 |
| HapII | CCGG | 2 cut(s) | 294, 339 |
| Hin1II | CATG | 3 cut(s) | 71, 154, 349 |
| HindIII | AAGCTT | 1 cut(s) | 446 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HpaII | CCGG | 2 cut(s) | 294, 339 |
| HphI | GGTGA | 2 cut(s) | 146, 328 |
| Hpy166II | GTNNAC | 2 cut(s) | 196, 590 |
| Hpy188I | TCNGA | 3 cut(s) | 15, 214, 443 |
| Hpy188III | TCNNGA | 1 cut(s) | 373 |
| Hpy8I | GTNNAC | 2 cut(s) | 196, 590 |
| Hpy99I | CGWCG | 1 cut(s) | 235 |
| HpyAV | CCTTC | 2 cut(s) | 462, 578 |
| HpyCH4III | ACNGT | 1 cut(s) | 210 |
| HpyCH4V | TGCA | 2 cut(s) | 46, 478 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 259, 275 |
| HpyF3I | CTNAG | 1 cut(s) | 391 |
| Hsp92II | CATG | 3 cut(s) | 71, 154, 349 |
| Kzo9I | GATC | 2 cut(s) | 320, 438 |
| LmnI | GCTCC | 4 cut(s) | 121, 171, 362, 493 |
| LpnPI | CCDG | 8 cut(s) | 110, 154, 264, 307, 352, 358, 367, 515 |
| LweI | GCATC | 2 cut(s) | 295, 442 |
| MaeI | CTAG | 2 cut(s) | 161, 497 |
| MalI | GATC | 2 cut(s) | 322, 440 |
| MboI | GATC | 2 cut(s) | 320, 438 |
| MboII | GAAGA | 4 cut(s) | 88, 97, 100, 103 |
| MflI | RGATCY | 1 cut(s) | 320 |
| MhlI | GDGCHC | 1 cut(s) | 168 |
| MluCI | AATT | 3 cut(s) | 327, 332, 457 |
| MmeI | TCCRAC | 2 cut(s) | 99, 192 |
| MnlI | CCTC | 6 cut(s) | 121, 124, 493, 547, 552, 556 |
| MslI | CAYNNNNRTG | 3 cut(s) | 66, 405, 432 |
| MspI | CCGG | 2 cut(s) | 294, 339 |
| MspR9I | CCNGG | 2 cut(s) | 294, 295 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 259, 275 |
| NciI | CCSGG | 2 cut(s) | 294, 295 |
| NdeII | GATC | 2 cut(s) | 320, 438 |
| NlaIII | CATG | 3 cut(s) | 71, 154, 349 |
| NlaIV | GGNNCC | 1 cut(s) | 322 |
| NspI | RCATGY | 1 cut(s) | 154 |
| PciI | ACATGT | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PkrI | GCNGC | 1 cut(s) | 344 |
| PscI | ACATGT | 1 cut(s) | 150 |
| PsiI | TTATAA | 1 cut(s) | 273 |
| PspFI | CCCAGC | 1 cut(s) | 353 |
| PspN4I | GGNNCC | 1 cut(s) | 322 |
| PsuI | RGATCY | 1 cut(s) | 320 |
| RseI | CAYNNNNRTG | 3 cut(s) | 66, 405, 432 |
| SatI | GCNGC | 1 cut(s) | 343 |
| Sau3AI | GATC | 2 cut(s) | 320, 438 |
| ScrFI | CCNGG | 2 cut(s) | 294, 295 |
| SduI | GDGCHC | 1 cut(s) | 168 |
| SetI | ASST | 7 cut(s) | 126, 359, 450, 484, 498, 558, 589 |
| SfaNI | GCATC | 2 cut(s) | 295, 442 |
| SfcI | CTRYAG | 1 cut(s) | 523 |
| SgrAI | CRCCGGYG | 1 cut(s) | 338 |
| SmaI | CCCGGG | 1 cut(s) | 295 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 66, 405, 432 |
| Sse9I | AATT | 3 cut(s) | 327, 332, 457 |
| SsiI | CCGC | 4 cut(s) | 19, 40, 309, 342 |
| SspMI | CTAG | 2 cut(s) | 161, 497 |
| StyD4I | CCNGG | 2 cut(s) | 292, 293 |
| TaaI | ACNGT | 1 cut(s) | 210 |
| TasI | AATT | 3 cut(s) | 327, 332, 457 |
| TauI | GCSGC | 1 cut(s) | 345 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| TscAI | CASTG | 2 cut(s) | 28, 255 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspMI | CCCGGG | 1 cut(s) | 293 |
| TspRI | CASTG | 2 cut(s) | 28, 255 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 570 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XceI | RCATGY | 1 cut(s) | 154 |
| XmaI | CCCGGG | 1 cut(s) | 293 |
| XspI | CTAG | 2 cut(s) | 161, 497 |