Rroxscaffold_4G00320610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000213
Physical Location & Seq
Reverse (-)
49421174 .. 49428415
7242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320610.1

Sequence Viewer

Length: 459 bp
ATGGATGAGACTTTAAACGAGGGCAAACATGTGCCTTTGACGTTGGAGGTCGCCGGCAAGCTCTATGTTCTCTCCGCTAAGTGGTTTGGTTTAAGTTTAAATTCATTTGAGGTTTTTGACCCCATTCACAGAATTGGTCACTTCTCCCGCAATTTCCAAATTGTGGTCAATCCCTCTCTTGTGCAATTGCCGGCACCAAGCTTTTCGTCTCCAATGAAAGAACCCCCAAGCCACGGAATTCAAGCAAGGCCGAAGGGAGAAGAAGGAGCCGTGACCTATTCCTCACCATCCACCATTGAAGACTTGCTTTCAAGCTTCAAGGATCCCAACGAAAATCATCCATTCTCATCTTCCATCCACGCCATTGAAGCCAATCGGTCAACTTCGGGACCAGGCACGGTAATGGCTGCAGCAGATACTTTCGAACTCTTCTTTCCCCGCCACACACGAGGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.66

Weight (kDa)

6.14

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 163
AciI CCGC 3 cut(s) 75, 148, 439
AclWI GGATC 2 cut(s) 317, 330
AcsI RAATTY 2 cut(s) 100, 237
AfiI CCNNNNNNNGG 3 cut(s) 81, 163, 233
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 5 cut(s) 242, 299, 312, 319, 368
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 3 cut(s) 61, 201, 315
AluI AGCT 3 cut(s) 61, 201, 315
Alw26I GTCTC 2 cut(s) 2, 213
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 407, 410
ApoI RAATTY 2 cut(s) 100, 237
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 276
AsuII TTCGAA 1 cut(s) 423
AvaII GGWCC 1 cut(s) 389
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 193
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 394, 422
BccI CCATC 2 cut(s) 295, 362
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 2, 213
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 2 cut(s) 408, 411
BlsI GCNGC 2 cut(s) 409, 412
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 4 cut(s) 195, 268, 324, 390
BmrFI CCNGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 163, 233
Bse118I RCCGGY 2 cut(s) 53, 190
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 4 cut(s) 10, 287, 337, 354
BseLI CCNNNNNNNGG 3 cut(s) 81, 163, 233
BseXI GCAGC 2 cut(s) 394, 422
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 54, 191
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 3 cut(s) 81, 163, 233
BsmAI GTCTC 2 cut(s) 2, 213
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 1 cut(s) 250
Bsp119I TTCGAA 1 cut(s) 423
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 3 cut(s) 75, 148, 439
BspANI GGCC 1 cut(s) 250
BspLI GGNNCC 4 cut(s) 195, 268, 324, 390
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 2 cut(s) 317, 330
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 193
BsrFI RCCGGY 2 cut(s) 53, 190
BssAI RCCGGY 2 cut(s) 53, 190
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 322
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 55, 59, 192
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 10, 287, 337, 354
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 2 cut(s) 2, 213
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 394, 422
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 4 cut(s) 10, 287, 337, 354
Cac8I GCNNGC 3 cut(s) 55, 59, 192
Cfr10I RCCGGY 2 cut(s) 53, 190
Cfr13I GGNCC 1 cut(s) 389
CviAII CATG 1 cut(s) 29
CviJI RGCY 8 cut(s) 61, 201, 231, 250, 269, 315, 371, 407
CviKI_1 RGCY 8 cut(s) 61, 201, 231, 250, 269, 315, 371, 407
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DraI TTTAAA 2 cut(s) 15, 99
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 1 cut(s) 32
FaiI YATR 2 cut(s) 30, 66
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 402
FatI CATG 1 cut(s) 28
FauI CCCGC 2 cut(s) 155, 446
Fnu4HI GCNGC 2 cut(s) 408, 411
FokI GGATG 4 cut(s) 17, 274, 324, 341
Fsp4HI GCNGC 2 cut(s) 408, 411
GluI GCNGC 2 cut(s) 408, 411
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 54, 191
Hin1II CATG 1 cut(s) 32
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 2 cut(s) 199, 313
HpaII CCGG 2 cut(s) 54, 191
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 381
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 247, 257
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 184, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 32
KroI GCCGGC 2 cut(s) 53, 190
KroNI GCCGGC 2 cut(s) 55, 192
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 4 cut(s) 67, 204, 378, 405
Lsp1109I GCAGC 2 cut(s) 394, 422
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 137, 271
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 4 cut(s) 272, 311, 342, 421
MfeI CAATTG 1 cut(s) 185
MflI RGATCY 1 cut(s) 322
MluCI AATT 6 cut(s) 100, 132, 151, 159, 185, 237
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 6 cut(s) 13, 40, 103, 184, 292, 443
MroNI GCCGGC 2 cut(s) 53, 190
MseI TTAA 3 cut(s) 14, 92, 98
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 2 cut(s) 54, 191
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 368
NaeI GCCGGC 2 cut(s) 55, 192
NdeII GATC 1 cut(s) 322
NgoMIV GCCGGC 2 cut(s) 53, 190
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 4 cut(s) 195, 268, 324, 390
NmuCI GTSAC 2 cut(s) 137, 271
NspI RCATGY 1 cut(s) 32
NspV TTCGAA 1 cut(s) 423
PciI ACATGT 1 cut(s) 28
PdiI GCCGGC 2 cut(s) 55, 192
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 2 cut(s) 409, 412
PscI ACATGT 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 4 cut(s) 195, 268, 324, 390
PspPI GGNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 3 cut(s) 14, 92, 98
SatI GCNGC 2 cut(s) 408, 411
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 393
SetI ASST 8 cut(s) 44, 51, 63, 114, 203, 278, 317, 454
SfcI CTRYAG 1 cut(s) 408
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 6 cut(s) 100, 132, 151, 159, 185, 237
SsiI CCGC 3 cut(s) 75, 148, 439
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 423
TaqII GACCGA 1 cut(s) 366
TasI AATT 6 cut(s) 100, 132, 151, 159, 185, 237
Tru1I TTAA 3 cut(s) 14, 92, 98
Tru9I TTAA 3 cut(s) 14, 92, 98
TseFI GTSAC 2 cut(s) 137, 271
TseI GCWGC 2 cut(s) 407, 410
Tsp45I GTSAC 2 cut(s) 137, 271
TspDTI ATGAA 2 cut(s) 93, 230
TspGWI ACGGA 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 2 cut(s) 100, 237
XceI RCATGY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.