AT5G51260

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010270
Physical Location & Seq
Reverse (-)
20831984 .. 20833817
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51260.2

Sequence Viewer

Length: 774 bp
ATGAGGATTTATCTGATTTTCCTCGTGGTGGTTTCCTTATTTACCTCCGCGTTTTCCGATTCGATTCTCGAGTACCCGTCGGAAATCGAGAGTCGACACAAGAAAGCTGCCGAAGAAGATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGGAGATGAACAATCTCGCGCCGTGGAAAACAATCCCGGTGGAATGTGCCGATTACGTGAAGGACTATGTGATGGGTAAAGGCTACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGATCTTCGCGAGAAGCATCGAATTCTCCGGCGATGGCAAAGATATTTGGATTTTCGATATCGATGAGACTCTCTTATCCAATCTTCCTTATTACATTGATCATGGTTTTGGGTTGGAGCTTTTTGATCATTCGGAGTTTGATAAGTGGGTAGAGAGAGGAGTGGCACCAGCCATAGCACCAAGCTTGAAGCTTTACCAAAGAGTGTTAGATTTGGGATACAAAGTTTTCTTGCTTACAGGGAGGAAAGAGAGTCACAGGCTTGTCACTGTTGAAAATCTCATCAATGCTGGTTTCCAGAACTGGGACAAGCTTATTCTCAGATCTCCAGAGGAACAGCACAAAATGGCGACACTATACAAATCTGAGAAGAGAGATGAGATGGTGAAAGAGGGATATAGGATTAGAGGCAATTCAGGTGATCAATGGAGTGATTTGTTGGGTACCTCCATGTCTCAACGATCTTTCAAACTCGCAAATCCAATGTATTATATCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

257

Amino Acids

29.78

Weight (kDa)

5.26

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 31 - 202 1e-61 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 716
AccB1I GGYRCC 2 cut(s) 439, 716
AccI GTMKAC 1 cut(s) 94
AccII CGCG 4 cut(s) 50, 152, 173, 284
AciI CCGC 3 cut(s) 48, 152, 155
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 3 cut(s) 74, 136, 718
AfiI CCNNNNNNNGG 2 cut(s) 28, 577
AgsI TTSAA 3 cut(s) 463, 548, 742
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 6 cut(s) 107, 272, 394, 459, 466, 586
AluI AGCT 6 cut(s) 107, 272, 394, 459, 466, 586
Alw26I GTCTC 3 cut(s) 265, 335, 732
Ama87I CYCGRG 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 296
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
Asp718I GGTACC 1 cut(s) 716
AspLEI GCGC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 3 cut(s) 235, 670, 704
AvaI CYCGRG 1 cut(s) 68
BanI GGYRCC 2 cut(s) 439, 716
BauI CACGAG 1 cut(s) 23
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 220, 302, 649
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 1 cut(s) 485
BclI TGATCA 3 cut(s) 373, 400, 694
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 3 cut(s) 265, 335, 732
BfuI GTATCC 1 cut(s) 485
BglII AGATCT 1 cut(s) 596
BisI GCNGC 2 cut(s) 108, 153
BlsI GCNGC 2 cut(s) 109, 154
Bme1390I CCNGG 2 cut(s) 142, 191
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 441, 718
BmrFI CCNGG 2 cut(s) 142, 191
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 586
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 2 cut(s) 163, 585
BpuMI CCSGG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 577
Bse1I ACTGG 1 cut(s) 581
BseBI CCWGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 28, 577
BseMII CTCAG 2 cut(s) 607, 630
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 4 cut(s) 50, 152, 173, 284
BshNI GGYRCC 2 cut(s) 439, 716
BshVI ATCGAT 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 2 cut(s) 191, 303
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 28, 577
BsmAI GTCTC 3 cut(s) 265, 335, 732
BsmFI GGGAC 1 cut(s) 593
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 6 cut(s) 276, 373, 400, 596, 694, 734
Bsp68I TCGCGA 1 cut(s) 284
BspACI CCGC 3 cut(s) 48, 152, 155
BspCNI CTCAG 2 cut(s) 606, 631
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 4 cut(s) 50, 152, 173, 284
BspLI GGNNCC 2 cut(s) 441, 718
BspT107I GGYRCC 2 cut(s) 439, 716
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 6 cut(s) 276, 373, 400, 596, 694, 734
BssSI CACGAG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 593, 639
BstDSI CCRYGG 1 cut(s) 176
BstFNI CGCG 4 cut(s) 50, 152, 173, 284
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 6 cut(s) 279, 376, 403, 599, 697, 737
BstMAI GTCTC 3 cut(s) 265, 335, 732
BstMBI GATC 6 cut(s) 276, 373, 400, 596, 694, 734
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 140, 189
BstUI CGCG 4 cut(s) 50, 152, 173, 284
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
Bsu15I ATCGAT 1 cut(s) 336
BsuI GTATCC 1 cut(s) 485
BsuTUI ATCGAT 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 540
BtuMI TCGCGA 1 cut(s) 284
CfoI GCGC 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 3 cut(s) 73, 135, 717
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 2 cut(s) 377, 724
CviJI RGCY 9 cut(s) 107, 237, 272, 394, 446, 459, 466, 535, 586
CviKI_1 RGCY 9 cut(s) 107, 237, 272, 394, 446, 459, 466, 535, 586
CviQI GTAC 3 cut(s) 73, 135, 717
DdeI CTNAG 2 cut(s) 593, 639
DpnI GATC 6 cut(s) 278, 375, 402, 598, 696, 736
DpnII GATC 6 cut(s) 276, 373, 400, 596, 694, 734
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
EciI GGCGGA 1 cut(s) 170
Eco32I GATATC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 334
FaeI CATG 2 cut(s) 380, 727
FaiI YATR 7 cut(s) 222, 378, 449, 631, 672, 725, 765
FaqI GGGAC 1 cut(s) 593
FatI CATG 2 cut(s) 376, 723
FbaI TGATCA 3 cut(s) 373, 400, 694
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 108, 153
Fsp4HI GCNGC 2 cut(s) 108, 153
GlaI GCGC 1 cut(s) 174
GluI GCNGC 2 cut(s) 108, 153
GsuI CTGGAG 2 cut(s) 163, 585
HapII CCGG 2 cut(s) 191, 303
HhaI GCGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 380, 727
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HindIII AAGCTT 4 cut(s) 270, 457, 464, 584
HinfI GANTC 7 cut(s) 59, 64, 91, 147, 258, 343, 526
HpaII CCGG 2 cut(s) 191, 303
HphI GGTGA 3 cut(s) 235, 670, 704
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 7 cut(s) 15, 58, 82, 265, 409, 596, 640
Hpy188III TCNNGA 5 cut(s) 68, 88, 283, 571, 602
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 593, 639
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 380, 727
HspAI GCGC 1 cut(s) 173
KpnI GGTACC 1 cut(s) 720
Ksp22I TGATCA 3 cut(s) 373, 400, 694
Kzo9I GATC 6 cut(s) 276, 373, 400, 596, 694, 734
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 300
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 527, 538
MalI GATC 6 cut(s) 278, 375, 402, 598, 696, 736
MboI GATC 6 cut(s) 276, 373, 400, 596, 694, 734
MboII GAAGA 6 cut(s) 125, 128, 271, 278, 350, 655
MflI RGATCY 1 cut(s) 596
MluCI AATT 3 cut(s) 124, 296, 685
MlyI GAGTC 4 cut(s) 100, 267, 337, 535
MmeI TCCRAC 2 cut(s) 60, 369
MnlI CCTC 9 cut(s) 32, 55, 251, 425, 510, 598, 658, 674, 730
MspI CCGG 2 cut(s) 191, 303
MspR9I CCNGG 2 cut(s) 142, 191
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 4 cut(s) 50, 152, 173, 284
NciI CCSGG 1 cut(s) 191
NdeII GATC 6 cut(s) 276, 373, 400, 596, 694, 734
NlaIII CATG 2 cut(s) 380, 727
NlaIV GGNNCC 2 cut(s) 441, 718
NmuCI GTSAC 2 cut(s) 527, 538
NruI TCGCGA 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 68
PfeI GAWTC 3 cut(s) 59, 64, 147
PkrI GCNGC 2 cut(s) 109, 154
PleI GAGTC 4 cut(s) 99, 266, 337, 534
PpsI GAGTC 4 cut(s) 99, 266, 337, 534
Ppu21I YACGTR 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 441, 718
PsuI RGATCY 1 cut(s) 596
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 3 cut(s) 74, 136, 718
RsaNI GTAC 3 cut(s) 73, 135, 717
SalI GTCGAC 1 cut(s) 93
SatI GCNGC 2 cut(s) 108, 153
Sau3AI GATC 6 cut(s) 276, 373, 400, 596, 694, 734
SchI GAGTC 4 cut(s) 100, 267, 337, 535
ScrFI CCNGG 2 cut(s) 142, 191
SfaNI GCATC 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 124, 296, 685
SsiI CCGC 3 cut(s) 48, 152, 155
StyD4I CCNGG 2 cut(s) 140, 189
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 1 cut(s) 213
TaqI TCGA 7 cut(s) 62, 69, 87, 94, 294, 330, 336
TasI AATT 3 cut(s) 124, 296, 685
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 59, 64, 147
TscAI CASTG 1 cut(s) 547
TseFI GTSAC 2 cut(s) 527, 538
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 2 cut(s) 527, 538
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 1 cut(s) 547
XapI RAATTY 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.