RchiOBHm_Chr1g0373811

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010270
Physical Location & Seq
Forward (+)
61839450 .. 61842083
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59765

Sequence Viewer

Length: 804 bp
ATGATTTTCTGGAAATTTCTCCTTCTGTTTCCTCTACTAACCCTAGCTTTCTCCCACCAACCTTTCGACTCCCACCACCTACCCCGGCCGTTGATCATCGAGTACCCCGAGCACGCCGAGCCCCGTTTCAAGGAGCTAGAGGAGGAAGAGCTCAAGCTACGCTGTACGAGCTGGAGGTTTTCGGTGGAGGCTAACAATGTGAATCCATGGAAGACGATTCCGGAGGAATGTGGAGAGTATGTGAAGGACTACGTCACCGGCCGGGCTTATGGTGTTGATCTGGAGAGGGTTTCTAATGATGCTGGGCTTTATGCCAAGAGTGTTGGATTGAGTGGTGATGGCAAAGATGTGTGGATTTTCGATGTTGATGACACTCTTCTGTCCAATCTTCCGTATTATGCCGACCATGGTTATGGCTTGGAGGTTTTTGATCAGTTGCAGTTTGATAAGTGGGTCGAGAAGGGCATGTCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTTTTGGGCTTGGGCTTTAAGGTATTCTTGCTCACTGGGCGCAGCGAAGGGAAAAGAGGGGTTACTATTGAGAATCTGATCAATGCAGGATTTCGAGACTGGCATAAGCTTATTTTGAGGGACGCAAATGACCAAGGGAAATTAGCTACAATTTTCAAATCAGAGAAAAGAGGCGAGATGGAAAAGGAGGGATACAGAATTCTTGGAAATTCTGGAGACCAGTGGAGTGATTTATTGGGTAGCTCAATGTCCATCCGCTCATTCAAGCTTCCCAATCCCATGTATTACATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

267

Amino Acids

30.7

Weight (kDa)

5.38

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 47 - 267 3.3e-84 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 481
Acc36I ACCTGC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 765
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 1 cut(s) 763
AcoI YGGCCR 2 cut(s) 86, 259
AcsI RAATTY 3 cut(s) 14, 705, 715
AfaI GTAC 2 cut(s) 104, 166
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 130, 493, 664, 772
Alw21I GWGCWC 2 cut(s) 114, 153
Alw26I GTCTC 2 cut(s) 597, 717
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 2 cut(s) 86, 259
ApeKI GCWGC 1 cut(s) 549
ApoI RAATTY 3 cut(s) 14, 705, 715
AspLEI GCGC 1 cut(s) 549
AsuC2I CCSGG 2 cut(s) 85, 263
AsuHPI GGTGA 3 cut(s) 247, 347, 462
AvaI CYCGRG 1 cut(s) 107
BanII GRGCYC 2 cut(s) 123, 153
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 2 cut(s) 114, 153
BbvI GCAGC 1 cut(s) 561
BccI CCATC 3 cut(s) 332, 679, 767
BceAI ACGGC 1 cut(s) 73
BciVI GTATCC 1 cut(s) 692
BclI TGATCA 3 cut(s) 93, 430, 585
BcnI CCSGG 2 cut(s) 85, 263
BcoDI GTCTC 2 cut(s) 597, 717
BfaI CTAG 2 cut(s) 44, 137
BfuAI ACCTGC 1 cut(s) 481
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 1 cut(s) 550
BlsI GCNGC 1 cut(s) 551
Bme1390I CCNGG 2 cut(s) 85, 263
BmeT110I CYCGRG 1 cut(s) 107
BmrFI CCNGG 2 cut(s) 85, 263
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 3 cut(s) 193, 302, 741
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 2 cut(s) 85, 263
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 4 cut(s) 83, 206, 406, 640
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 547, 611, 727
BseAI TCCGGA 1 cut(s) 220
BseDI CCNNGG 4 cut(s) 83, 206, 406, 640
BseGI GGATG 1 cut(s) 759
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 3 cut(s) 547, 611, 727
BseRI GAGGAG 1 cut(s) 155
BseX3I CGGCCG 2 cut(s) 86, 259
BseXI GCAGC 1 cut(s) 561
BseYI CCCAGC 1 cut(s) 302
Bsh1285I CGRYCG 2 cut(s) 89, 262
BshFI GGCC 2 cut(s) 88, 261
BsiEI CGRYCG 2 cut(s) 89, 262
BsiHKAI GWGCWC 2 cut(s) 114, 153
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 85, 221, 258, 262
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 597, 717
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 2 cut(s) 88, 261
Bso31I GGTCTC 1 cut(s) 717
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 114, 123, 153
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 4 cut(s) 93, 277, 430, 585
Bsp19I CCATGG 2 cut(s) 206, 406
BspACI CCGC 1 cut(s) 763
BspANI GGCC 2 cut(s) 88, 261
BspEI TCCGGA 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 481
BspQI GCTCTTC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 717
BsrBI CCGCTC 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 3 cut(s) 547, 611, 727
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 4 cut(s) 83, 206, 406, 640
BssMI GATC 4 cut(s) 93, 277, 430, 585
BssT1I CCWWGG 3 cut(s) 206, 406, 640
Bst6I CTCTTC 3 cut(s) 141, 381, 498
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 206, 406
BstF5I GGATG 1 cut(s) 759
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 4 cut(s) 96, 280, 433, 588
BstMAI GTCTC 2 cut(s) 597, 717
BstMBI GATC 4 cut(s) 93, 277, 430, 585
BstMCI CGRYCG 2 cut(s) 89, 262
BstMWI GCNNNNNNNGC 3 cut(s) 118, 168, 544
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 83, 261
BstV1I GCAGC 1 cut(s) 561
BstV2I GAAGAC 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 413
BstZI CGGCCG 2 cut(s) 86, 259
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 2 cut(s) 88, 261
BtgI CCRYGG 2 cut(s) 206, 406
BtsCI GGATG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 540, 734
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 549
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 1 cut(s) 638
Csp6I GTAC 2 cut(s) 103, 165
CviAII CATG 4 cut(s) 207, 407, 466, 787
CviQI GTAC 2 cut(s) 103, 165
DpnI GATC 4 cut(s) 95, 279, 432, 587
DpnII GATC 4 cut(s) 93, 277, 430, 585
EaeI YGGCCR 2 cut(s) 86, 259
EagI CGGCCG 2 cut(s) 86, 259
Eam1104I CTCTTC 3 cut(s) 141, 381, 498
EarI CTCTTC 3 cut(s) 141, 381, 498
Ecl136II GAGCTC 1 cut(s) 151
EclXI CGGCCG 2 cut(s) 86, 259
Eco130I CCWWGG 3 cut(s) 206, 406, 640
Eco24I GRGCYC 2 cut(s) 123, 153
Eco31I GGTCTC 1 cut(s) 717
Eco52I CGGCCG 2 cut(s) 86, 259
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 705
EcoT14I CCWWGG 3 cut(s) 206, 406, 640
EcoT38I GRGCYC 2 cut(s) 123, 153
ErhI CCWWGG 3 cut(s) 206, 406, 640
FaeI CATG 4 cut(s) 210, 410, 469, 790
FalI AAGNNNNNCTT 4 cut(s) 473, 505, 518, 550
FaqI GGGAC 1 cut(s) 641
FatI CATG 4 cut(s) 206, 406, 465, 786
FbaI TGATCA 3 cut(s) 93, 430, 585
Fnu4HI GCNGC 1 cut(s) 550
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 2 cut(s) 123, 153
Fsp4HI GCNGC 1 cut(s) 550
FspBI CTAG 2 cut(s) 44, 137
GlaI GCGC 1 cut(s) 548
GluI GCNGC 1 cut(s) 550
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 3 cut(s) 193, 302, 741
HaeIII GGCC 2 cut(s) 88, 261
HapII CCGG 4 cut(s) 85, 221, 258, 262
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 549
Hin1II CATG 4 cut(s) 210, 410, 469, 790
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 614, 773
HinfI GANTC 4 cut(s) 68, 202, 217, 580
HpaII CCGG 4 cut(s) 85, 221, 258, 262
HphI GGTGA 3 cut(s) 247, 347, 462
Hpy188I TCNGA 2 cut(s) 585, 670
Hpy188III TCNNGA 6 cut(s) 10, 221, 281, 457, 602, 720
HpyAV CCTTC 4 cut(s) 32, 238, 454, 548
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 439, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 168, 544
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 4 cut(s) 210, 410, 469, 790
HspAI GCGC 1 cut(s) 547
Kpn2I TCCGGA 1 cut(s) 220
Ksp22I TGATCA 3 cut(s) 93, 430, 585
Kzo9I GATC 4 cut(s) 93, 277, 430, 585
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 44, 137
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 253, 468, 568
MalI GATC 4 cut(s) 95, 279, 432, 587
MbiI CCGCTC 1 cut(s) 765
MboI GATC 4 cut(s) 93, 277, 430, 585
MboII GAAGA 5 cut(s) 158, 223, 368, 380, 515
MhlI GDGCHC 3 cut(s) 114, 123, 153
MluCI AATT 5 cut(s) 14, 647, 657, 705, 715
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 304
MroI TCCGGA 1 cut(s) 220
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 4 cut(s) 85, 221, 258, 262
MspR9I CCNGG 2 cut(s) 85, 263
MwoI GCNNNNNNNGC 3 cut(s) 118, 168, 544
NciI CCSGG 2 cut(s) 85, 263
NcoI CCATGG 2 cut(s) 206, 406
NdeII GATC 4 cut(s) 93, 277, 430, 585
NlaIII CATG 4 cut(s) 210, 410, 469, 790
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 253, 468
NspI RCATGY 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 3 cut(s) 202, 217, 580
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 551
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 302
PsyI GACNNNGTC 1 cut(s) 251
RsaI GTAC 2 cut(s) 104, 166
RsaNI GTAC 2 cut(s) 103, 165
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 1 cut(s) 550
Sau3AI GATC 4 cut(s) 93, 277, 430, 585
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 85, 263
SduI GDGCHC 3 cut(s) 114, 123, 153
SfaNI GCATC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 5 cut(s) 14, 647, 657, 705, 715
SsiI CCGC 1 cut(s) 763
SspMI CTAG 2 cut(s) 44, 137
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 83, 261
StyI CCWWGG 3 cut(s) 206, 406, 640
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 66, 99, 360, 456, 601
TasI AATT 5 cut(s) 14, 647, 657, 705, 715
TfiI GAWTC 3 cut(s) 202, 217, 580
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 2 cut(s) 547, 734
TseFI GTSAC 2 cut(s) 253, 468
TseI GCWGC 1 cut(s) 549
Tsp45I GTSAC 2 cut(s) 253, 468
TspDTI ATGAA 1 cut(s) 516
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 547, 734
Tth111I GACNNNGTC 1 cut(s) 251
XapI RAATTY 3 cut(s) 14, 705, 715
XceI RCATGY 1 cut(s) 469
XspI CTAG 2 cut(s) 44, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.