Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000294.1

Orthogroup ID

OG0010270

Physical Location & Seq

Genomic Coordinates Reverse (-)

501 .. 3171

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000294.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

gagctagaggaggaagatcagctcaagctacactgtacgagctggaggttttcggtggaggctaacaatgtgaatccatggaagacgattccggaggaatgtgtggagtatgtgaaggactacgtcaccggccgggcttatggtgttgatctggagagggtttctaatgatgctgggctttatgccaagagtgttggattgagtggtgatggcaaagatgtgtggattttcgatgttgatgacactcttctgtccaatcttccgtattacgccgaccatggttatggcttggaggtttttgatcagttgcagtttgataagtgggtcgagaagggcatgtcacctgctataaagtccagcttgaaactctatgaagaggttttgggcttgggctttaaggtattcttgctcactgggcgcagcgaagggaaaagaggggttactattgagaatctgatcaatgcaggatttcgagactggcataagcttattttgagggacgcaaatgaccaagggaaattagctacaattttcaaatcagagaaaagaggcgagatggaaaaggagggatacagaattcttggaaattctggagaccagtggagtgatttattgggtagctcaatgtccatccgctcattcaagcttcccaatcccatgtattacattccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

224

Amino Acids

25.48

Weight (kDa)

4.97

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25150 AT5G51260 AT5G51260
fragaria_vesca	FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica	MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica	Prupe.2G273200_v2.0.a1
pyrus_communis	pycom01g18850 pycom07g22280
rosa_chinensis	RchiOBHm_Chr1g0373811
rosa_laevigata	RLG00000026804
rosa_multiflora	Rmu_ssc0000294.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283990
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana	Rw1G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	636
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	1 cut(s)	634
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	576, 586
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	364, 535, 643
AluBI	AGCT	9 cut(s)	4, 22, 28, 42, 360, 487, 524, 621, 646
AluI	AGCT	9 cut(s)	4, 22, 28, 42, 360, 487, 524, 621, 646
Alw26I	GTCTC	2 cut(s)	468, 588
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	2 cut(s)	576, 586
AspLEI	GCGC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	118, 218, 333
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	3 cut(s)	203, 550, 638
BciVI	GTATCC	1 cut(s)	563
BclI	TGATCA	2 cut(s)	301, 456
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	468, 588
BfaI	CTAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	3 cut(s)	64, 173, 612
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	588
BsaJI	CCNNGG	3 cut(s)	77, 277, 511
BsaWI	WCCGGW	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	418, 482, 598
BseAI	TCCGGA	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	77, 277, 511
BseGI	GGATG	1 cut(s)	630
BseNI	ACTGG	3 cut(s)	418, 482, 598
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	92, 129, 133
BslFI	GGGAC	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	468, 588
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	588
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	16, 148, 301, 456
Bsp19I	CCATGG	2 cut(s)	77, 277
BspACI	CCGC	1 cut(s)	634
BspANI	GGCC	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	588
BsrBI	CCGCTC	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	418, 482, 598
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	77, 277, 511
BssMI	GATC	4 cut(s)	16, 148, 301, 456
BssT1I	CCWWGG	3 cut(s)	77, 277, 511
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	252, 369
BstDSI	CCRYGG	2 cut(s)	77, 277
BstF5I	GGATG	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	4 cut(s)	19, 151, 304, 459
BstMAI	GTCTC	2 cut(s)	468, 588
BstMBI	GATC	4 cut(s)	16, 148, 301, 456
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstZI	CGGCCG	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	2 cut(s)	77, 277
BtsCI	GGATG	1 cut(s)	630
BtsIMutI	CAGTG	3 cut(s)	31, 411, 605
BveI	ACCTGC	1 cut(s)	352
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	128
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	4 cut(s)	78, 278, 337, 658
CviQI	GTAC	1 cut(s)	36
DpnI	GATC	4 cut(s)	18, 150, 303, 458
DpnII	GATC	4 cut(s)	16, 148, 301, 456
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	252, 369
EarI	CTCTTC	2 cut(s)	252, 369
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	3 cut(s)	77, 277, 511
Eco31I	GGTCTC	1 cut(s)	588
Eco52I	CGGCCG	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	576
EcoT14I	CCWWGG	3 cut(s)	77, 277, 511
ErhI	CCWWGG	3 cut(s)	77, 277, 511
FaeI	CATG	4 cut(s)	81, 281, 340, 661
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 389, 421
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	4 cut(s)	77, 277, 336, 657
FbaI	TGATCA	2 cut(s)	301, 456
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	421
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	3 cut(s)	64, 173, 612
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	3 cut(s)	92, 129, 133
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	4 cut(s)	81, 281, 340, 661
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	2 cut(s)	485, 644
HinfI	GANTC	3 cut(s)	73, 88, 451
HpaII	CCGG	3 cut(s)	92, 129, 133
HphI	GGTGA	3 cut(s)	118, 218, 333
Hpy188I	TCNGA	2 cut(s)	456, 541
Hpy188III	TCNNGA	5 cut(s)	92, 152, 328, 473, 591
HpyAV	CCTTC	3 cut(s)	109, 325, 419
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	310, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	81, 281, 340, 661
HspAI	GCGC	1 cut(s)	418
Kpn2I	TCCGGA	1 cut(s)	91
Ksp22I	TGATCA	2 cut(s)	301, 456
Kzo9I	GATC	4 cut(s)	16, 148, 301, 456
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	124, 339, 439
MalI	GATC	4 cut(s)	18, 150, 303, 458
MbiI	CCGCTC	1 cut(s)	636
MboI	GATC	4 cut(s)	16, 148, 301, 456
MboII	GAAGA	5 cut(s)	26, 94, 239, 251, 386
MluCI	AATT	4 cut(s)	518, 528, 576, 586
MmeI	TCCRAC	1 cut(s)	175
MroI	TCCGGA	1 cut(s)	91
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	3 cut(s)	92, 129, 133
MspR9I	CCNGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	134
NcoI	CCATGG	2 cut(s)	77, 277
NdeII	GATC	4 cut(s)	16, 148, 301, 456
NlaIII	CATG	4 cut(s)	81, 281, 340, 661
NmuCI	GTSAC	2 cut(s)	124, 339
NspI	RCATGY	1 cut(s)	340
PaqCI	CACCTGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	73, 88, 451
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	4 cut(s)	16, 148, 301, 456
ScrFI	CCNGG	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	518, 528, 576, 586
SsiI	CCGC	1 cut(s)	634
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	3 cut(s)	77, 277, 511
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	231, 327, 472
TasI	AATT	4 cut(s)	518, 528, 576, 586
TfiI	GAWTC	3 cut(s)	73, 88, 451
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	3 cut(s)	38, 418, 605
TseFI	GTSAC	2 cut(s)	124, 339
TseI	GCWGC	1 cut(s)	420
Tsp45I	GTSAC	2 cut(s)	124, 339
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	3 cut(s)	38, 418, 605
Tth111I	GACNNNGTC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	576, 586
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.