Rroxscaffold_4G00283990

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010270
Physical Location & Seq
Reverse (-)
5747348 .. 5750603
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283990.1

Sequence Viewer

Length: 999 bp
ATGATTTTCTGGCAATTTCTCCTTCTGTTTCCGCTACTAACCCTAGCTTTCTCCCACGAACCTTTCGACCCCCACCACCTACCCCGGCCGTTGATCATCGAGTACCCCGAGCACGCCGAGCCCCGTTTCAAGGAGCTAGAGGAAGAGGTCAAGCTACACTGTACGAGCTGGAGGTTTTCGGTGGAGGCTAACAATGTGAATCCATGGAGGACGATTCCGGAGGAATGTGTGGAGTATGTGAAGGACTACGTCACCGGCCGGGCTTATGGGGTTGATTTGGAGAGGGTTTCTAATGATGCTGGGGTTTATGCCAAGAGTGTTGAATTGAGTGGTGATGGCAAAGATGTGTGGATTTTCGATGTTGATGATACTCTTCTGTCCAATCTTCCGTATTATGCCGACCATGGTTATGGCTCGGAGGTTTTTGATCAGTTGGAGTTTGATAAGTGGGTCGAGAAGGGCATGGCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTTTTGGGCTTGGGCTTTAAGGTATTCTTGCTCACTGGGCGCAGCCAAGGGAAAAGAGGGGTTACTATTGAGAATCTGATCCATGCAGGATTTCGAGATTGGCATAAGCTTATTTTGAGGGACGCAAATGACCAAGGGAAATTAGCTACAATTTTCAAATCAGAGAAAAGAGGCGAGATGGAAAAAGAGGGATACAGAATTCTTGGAAATTCTGGAGACCAGTGGAGTGATTTATTGGGTACACTTGTTTTCGAGCTCCTCCTAGCCAAAACTGTAGTAAAGCTGATTGGCGTCGAAAGTGGACAATGCAAAATCCAGATTCCTTCCTACTTACACATTGGACCACGACTTATAGTGTCCAAGGACCAAGGTTGTGAAATTGCTTTCATCGAGTCAGTCATTGTCGGTGCGTCACGTGGTGGAATGGGGACCCACCAGTTTGATATTGATGATTTGATGGAGAAGCTAGAGAAAAACATCTCATACTTATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

332

Amino Acids

37.73

Weight (kDa)

5.17

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 44 - 248 9.2e-77 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 466
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 577
AcoI YGGCCR 2 cut(s) 86, 256
AcsI RAATTY 2 cut(s) 702, 712
AcvI CACGTG 1 cut(s) 920
AcyI GRCGYC 1 cut(s) 795
AdeI CACNNNGTG 1 cut(s) 923
AfaI GTAC 3 cut(s) 104, 163, 745
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 130, 323, 490, 661
Alw21I GWGCWC 2 cut(s) 114, 762
Alw26I GTCTC 1 cut(s) 714
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 2 cut(s) 86, 256
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 2 cut(s) 702, 712
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 3 cut(s) 845, 868, 933
AsuC2I CCSGG 2 cut(s) 85, 260
AsuHPI GGTGA 2 cut(s) 244, 344
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 3 cut(s) 845, 868, 933
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 2 cut(s) 123, 762
BbrPI CACGTG 1 cut(s) 920
Bbv12I GWGCWC 2 cut(s) 114, 762
BbvI GCAGC 1 cut(s) 558
BccI CCATC 3 cut(s) 329, 676, 955
BceAI ACGGC 1 cut(s) 73
BciVI GTATCC 1 cut(s) 689
BclI TGATCA 2 cut(s) 93, 427
BcnI CCSGG 2 cut(s) 85, 260
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 4 cut(s) 44, 137, 767, 971
BfmI CTRYAG 1 cut(s) 777
BfuAI ACCTGC 1 cut(s) 478
BfuI GTATCC 1 cut(s) 689
BisI GCNGC 1 cut(s) 547
BlsI GCNGC 1 cut(s) 548
Bme1390I CCNGG 2 cut(s) 85, 260
Bme18I GGWCC 3 cut(s) 845, 868, 933
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 845, 868, 933
BmiI GGNNCC 3 cut(s) 468, 934, 935
BmrFI CCNGG 2 cut(s) 85, 260
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 549
BpmI CTGGAG 2 cut(s) 190, 738
BpuMI CCSGG 2 cut(s) 85, 260
BsaAI YACGTR 1 cut(s) 920
BsaHI GRCGYC 1 cut(s) 795
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 7 cut(s) 83, 203, 403, 550, 637, 864, 871
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 544, 724, 940
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 7 cut(s) 83, 203, 403, 550, 637, 864, 871
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 3 cut(s) 544, 724, 940
BseRI GAGGAG 1 cut(s) 752
BseX3I CGGCCG 2 cut(s) 86, 256
BseXI GCAGC 1 cut(s) 558
BseYI CCCAGC 1 cut(s) 299
Bsh1285I CGRYCG 2 cut(s) 89, 259
BshFI GGCC 2 cut(s) 88, 258
BshNI GGYRCC 1 cut(s) 466
BsiEI CGRYCG 2 cut(s) 89, 259
BsiHKAI GWGCWC 2 cut(s) 114, 762
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 85, 218, 255, 259
BslFI GGGAC 2 cut(s) 638, 946
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 2 cut(s) 638, 946
BsnI GGCC 2 cut(s) 88, 258
Bso31I GGTCTC 1 cut(s) 714
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 114, 123, 762
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 93, 427, 582
Bsp19I CCATGG 2 cut(s) 203, 403
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 88, 258
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 468, 934, 935
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 544, 724, 940
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 7 cut(s) 83, 203, 403, 550, 637, 864, 871
BssMI GATC 3 cut(s) 93, 427, 582
BssNI GRCGYC 1 cut(s) 795
BssT1I CCWWGG 6 cut(s) 203, 403, 550, 637, 864, 871
Bst4CI ACNGT 2 cut(s) 161, 778
Bst6I CTCTTC 3 cut(s) 138, 378, 495
BstACI GRCGYC 1 cut(s) 795
BstBAI YACGTR 1 cut(s) 920
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 203, 403
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 3 cut(s) 96, 430, 585
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 3 cut(s) 93, 427, 582
BstMCI CGRYCG 2 cut(s) 89, 259
BstMWI GCNNNNNNNGC 2 cut(s) 118, 541
BstSCI CCNGG 2 cut(s) 83, 258
BstSFI CTRYAG 1 cut(s) 777
BstV1I GCAGC 1 cut(s) 558
BstXI CCANNNNNNTGG 1 cut(s) 410
BstZI CGGCCG 2 cut(s) 86, 256
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 88, 258
BtgI CCRYGG 2 cut(s) 203, 403
BtsIMutI CAGTG 3 cut(s) 157, 537, 731
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 845, 868, 933
CseI GACGC 3 cut(s) 635, 784, 903
Csp6I GTAC 3 cut(s) 103, 162, 744
CviAII CATG 4 cut(s) 204, 404, 463, 587
CviQI GTAC 3 cut(s) 103, 162, 744
DpnI GATC 3 cut(s) 95, 429, 584
DpnII GATC 3 cut(s) 93, 427, 582
DraIII CACNNNGTG 1 cut(s) 923
EaeI YGGCCR 2 cut(s) 86, 256
EagI CGGCCG 2 cut(s) 86, 256
Eam1104I CTCTTC 3 cut(s) 138, 378, 495
EarI CTCTTC 3 cut(s) 138, 378, 495
Ecl136II GAGCTC 1 cut(s) 760
EclXI CGGCCG 2 cut(s) 86, 256
Eco130I CCWWGG 6 cut(s) 203, 403, 550, 637, 864, 871
Eco24I GRGCYC 2 cut(s) 123, 762
Eco31I GGTCTC 1 cut(s) 714
Eco47I GGWCC 3 cut(s) 845, 868, 933
Eco52I CGGCCG 2 cut(s) 86, 256
Eco53kI GAGCTC 1 cut(s) 760
Eco72I CACGTG 1 cut(s) 920
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 760
EcoO109I RGGNCCY 1 cut(s) 933
EcoRI GAATTC 1 cut(s) 702
EcoT14I CCWWGG 6 cut(s) 203, 403, 550, 637, 864, 871
EcoT38I GRGCYC 2 cut(s) 123, 762
ErhI CCWWGG 6 cut(s) 203, 403, 550, 637, 864, 871
FaeI CATG 4 cut(s) 207, 407, 466, 590
FalI AAGNNNNNCTT 4 cut(s) 470, 502, 515, 547
FaqI GGGAC 2 cut(s) 638, 946
FatI CATG 4 cut(s) 203, 403, 462, 586
FbaI TGATCA 2 cut(s) 93, 427
Fnu4HI GCNGC 1 cut(s) 547
FriOI GRGCYC 2 cut(s) 123, 762
Fsp4HI GCNGC 1 cut(s) 547
FspBI CTAG 4 cut(s) 44, 137, 767, 971
GlaI GCGC 1 cut(s) 545
GluI GCNGC 1 cut(s) 547
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 2 cut(s) 190, 738
HaeIII GGCC 2 cut(s) 88, 258
HapII CCGG 4 cut(s) 85, 218, 255, 259
HgaI GACGC 3 cut(s) 635, 784, 903
HhaI GCGC 1 cut(s) 546
Hin1I GRCGYC 1 cut(s) 795
Hin1II CATG 4 cut(s) 207, 407, 466, 590
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 5 cut(s) 199, 214, 577, 823, 896
HpaII CCGG 4 cut(s) 85, 218, 255, 259
HphI GGTGA 2 cut(s) 244, 344
Hpy166II GTNNAC 2 cut(s) 746, 806
Hpy188I TCNGA 3 cut(s) 418, 582, 667
Hpy188III TCNNGA 6 cut(s) 218, 454, 599, 717, 820, 996
Hpy8I GTNNAC 2 cut(s) 746, 806
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 4 cut(s) 32, 235, 451, 837
HpyCH4III ACNGT 2 cut(s) 161, 778
HpyCH4IV ACGT 2 cut(s) 249, 919
HpyCH4V TGCA 2 cut(s) 590, 813
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 541
HpySE526I ACGT 2 cut(s) 249, 919
Hsp92I GRCGYC 1 cut(s) 795
Hsp92II CATG 4 cut(s) 207, 407, 466, 590
HspAI GCGC 1 cut(s) 544
KflI GGGWCCC 1 cut(s) 933
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 2 cut(s) 93, 427
Kzo9I GATC 3 cut(s) 93, 427, 582
LmnI GCTCC 2 cut(s) 133, 765
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 1 cut(s) 286
MaeI CTAG 4 cut(s) 44, 137, 767, 971
MaeII ACGT 2 cut(s) 249, 919
MaeIII GTNAC 3 cut(s) 250, 565, 915
MalI GATC 3 cut(s) 95, 429, 584
MboI GATC 3 cut(s) 93, 427, 582
MboII GAAGA 4 cut(s) 155, 365, 377, 512
MhlI GDGCHC 3 cut(s) 114, 123, 762
MluCI AATT 7 cut(s) 14, 323, 644, 654, 702, 712, 882
MlyI GAGTC 1 cut(s) 905
MmeI TCCRAC 1 cut(s) 414
MroI TCCGGA 1 cut(s) 217
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 4 cut(s) 85, 218, 255, 259
MspR9I CCNGG 2 cut(s) 85, 260
MwoI GCNNNNNNNGC 2 cut(s) 118, 541
NciI CCSGG 2 cut(s) 85, 260
NcoI CCATGG 2 cut(s) 203, 403
NdeII GATC 3 cut(s) 93, 427, 582
NlaIII CATG 4 cut(s) 207, 407, 466, 590
NlaIV GGNNCC 3 cut(s) 468, 934, 935
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 250, 915
PaqCI CACCTGC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 105
PfeI GAWTC 4 cut(s) 199, 214, 577, 823
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 548
PleI GAGTC 1 cut(s) 904
PmaCI CACGTG 1 cut(s) 920
PmlI CACGTG 1 cut(s) 920
PpsI GAGTC 1 cut(s) 904
Ppu21I YACGTR 1 cut(s) 920
PpuMI RGGWCCY 1 cut(s) 933
Psp124BI GAGCTC 1 cut(s) 762
Psp5II RGGWCCY 1 cut(s) 933
PspCI CACGTG 1 cut(s) 920
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 468, 934, 935
PspPI GGNCC 3 cut(s) 845, 868, 933
PspPPI RGGWCCY 1 cut(s) 933
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 3 cut(s) 104, 163, 745
RsaNI GTAC 3 cut(s) 103, 162, 744
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 3 cut(s) 93, 427, 582
Sau96I GGNCC 3 cut(s) 845, 868, 933
SchI GAGTC 1 cut(s) 905
ScrFI CCNGG 2 cut(s) 85, 260
SduI GDGCHC 3 cut(s) 114, 123, 762
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 777
SinI GGWCC 3 cut(s) 845, 868, 933
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 7 cut(s) 14, 323, 644, 654, 702, 712, 882
SsiI CCGC 1 cut(s) 32
SspMI CTAG 4 cut(s) 44, 137, 767, 971
SstI GAGCTC 1 cut(s) 762
StyD4I CCNGG 2 cut(s) 83, 258
StyI CCWWGG 6 cut(s) 203, 403, 550, 637, 864, 871
TaaI ACNGT 2 cut(s) 161, 778
TaiI ACGT 2 cut(s) 252, 922
TaqI TCGA 8 cut(s) 66, 99, 357, 453, 598, 756, 798, 894
TasI AATT 7 cut(s) 14, 323, 644, 654, 702, 712, 882
TfiI GAWTC 4 cut(s) 199, 214, 577, 823
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 3 cut(s) 164, 544, 731
TseFI GTSAC 2 cut(s) 250, 915
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 2 cut(s) 250, 915
TspDTI ATGAA 2 cut(s) 513, 880
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 3 cut(s) 164, 544, 731
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 845, 868, 933
XapI RAATTY 2 cut(s) 702, 712
XspI CTAG 4 cut(s) 44, 137, 767, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.