Rw1G034630

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010270
Physical Location & Seq
Reverse (-)
62525263 .. 62527935
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034630.1

Sequence Viewer

Length: 807 bp
ATGATTTTCTGGAAATTTCTCCTTCTGTTTCCGCTACTAACCCTAGCTTTCTCCCACCAACCTTTCGACTCCCACCACCTACCCCGGCCGTTGATCATCGAGTACCCCGAGCACGCCGAGCCCCGTTTCAAGGAGCTAGAGGAGGAAGATCAGCTCAAGCTACACTGTACGAGCTGGAGGTTTTCGGTGGAGGCCAACAATGTGAATCCATGGAAGACGATTCCGGAGGAATGTGTGGAGTATGTGAAGGACTACGTCACCGGCCGGGCTTATGGGGTTGATCTGGAGAGGGTTTCTAATGATGCTGGGGTTTATGCCAAGAGTGTTGGATTGAGTGGTGATGGCAAAGATGTGTGGATTTTCGATGTTGATGATACTCTTCTGTCCAATCTTCCGTATTACGCCGACCATGGTTATGGCTTGGAGGTTTTTGATCAGTTGCAGTTTGATAAGTGGGTCGAGAAGGGCATGTCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTTTTGGGCTTGGGCTTTAAGGTATTCTTGCTCACTGGGCGCAGCGAAGGGAAAAGAGGGGTTACTATTGAGAATCTGATCAATGCAGGATTTCGAGACTGGCATGAGCTTATTTTGAGGGACGCAAATGACCAAGGGAAATTAGCTACAATTTTCAAATCAGAGAAAAGAGGCGAGATGGAAAAGGAGGGATACAGAATTCTTGGAAATTCTGGAGACCAGTGGAGTGATTTATTGGGTAGCTCAATGTCCATCCGCTCATTCAAGCTTCCCAATCCCATGTATTACATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

268

Amino Acids

30.83

Weight (kDa)

5.17

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 49 - 268 5.7e-85 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
Acc36I ACCTGC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 768
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 2 cut(s) 32, 766
AcoI YGGCCR 2 cut(s) 86, 262
AcsI RAATTY 3 cut(s) 14, 708, 718
AfaI GTAC 2 cut(s) 104, 169
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 130, 496, 667, 775
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 600, 720
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 86, 192, 262
ApeKI GCWGC 1 cut(s) 552
ApoI RAATTY 3 cut(s) 14, 708, 718
AspLEI GCGC 1 cut(s) 552
AsuC2I CCSGG 2 cut(s) 85, 266
AsuHPI GGTGA 3 cut(s) 250, 350, 465
AvaI CYCGRG 1 cut(s) 107
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 564
BccI CCATC 3 cut(s) 335, 682, 770
BceAI ACGGC 1 cut(s) 73
BciVI GTATCC 1 cut(s) 695
BclI TGATCA 3 cut(s) 93, 433, 588
BcnI CCSGG 2 cut(s) 85, 266
BcoDI GTCTC 2 cut(s) 600, 720
BfaI CTAG 2 cut(s) 44, 137
BfuAI ACCTGC 1 cut(s) 484
BfuI GTATCC 1 cut(s) 695
BisI GCNGC 1 cut(s) 553
BlsI GCNGC 1 cut(s) 554
Bme1390I CCNGG 2 cut(s) 85, 266
BmeT110I CYCGRG 1 cut(s) 107
BmrFI CCNGG 2 cut(s) 85, 266
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 3 cut(s) 196, 305, 744
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 85, 266
BsaI GGTCTC 1 cut(s) 720
BsaJI CCNNGG 4 cut(s) 83, 209, 409, 643
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 3 cut(s) 550, 614, 730
BseAI TCCGGA 1 cut(s) 223
BseDI CCNNGG 4 cut(s) 83, 209, 409, 643
BseGI GGATG 1 cut(s) 762
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 3 cut(s) 550, 614, 730
BseRI GAGGAG 1 cut(s) 155
BseX3I CGGCCG 2 cut(s) 86, 262
BseXI GCAGC 1 cut(s) 564
BseYI CCCAGC 1 cut(s) 305
Bsh1285I CGRYCG 2 cut(s) 89, 265
BshFI GGCC 3 cut(s) 88, 194, 264
BsiEI CGRYCG 2 cut(s) 89, 265
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 85, 224, 261, 265
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 600, 720
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 3 cut(s) 88, 194, 264
Bso31I GGTCTC 1 cut(s) 720
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 114, 123
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 5 cut(s) 93, 148, 280, 433, 588
Bsp19I CCATGG 2 cut(s) 209, 409
BspACI CCGC 2 cut(s) 32, 766
BspANI GGCC 3 cut(s) 88, 194, 264
BspEI TCCGGA 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 720
BsrBI CCGCTC 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 3 cut(s) 550, 614, 730
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 4 cut(s) 83, 209, 409, 643
BssMI GATC 5 cut(s) 93, 148, 280, 433, 588
BssT1I CCWWGG 3 cut(s) 209, 409, 643
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 2 cut(s) 384, 501
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 209, 409
BstF5I GGATG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 5 cut(s) 96, 151, 283, 436, 591
BstMAI GTCTC 2 cut(s) 600, 720
BstMBI GATC 5 cut(s) 93, 148, 280, 433, 588
BstMCI CGRYCG 2 cut(s) 89, 265
BstMWI GCNNNNNNNGC 2 cut(s) 118, 547
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 83, 264
BstV1I GCAGC 1 cut(s) 564
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 416
BstZI CGGCCG 2 cut(s) 86, 262
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 3 cut(s) 88, 194, 264
BtgI CCRYGG 2 cut(s) 209, 409
BtsCI GGATG 1 cut(s) 762
BtsIMutI CAGTG 3 cut(s) 163, 543, 737
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 552
Cfr10I RCCGGY 1 cut(s) 260
CseI GACGC 1 cut(s) 641
Csp6I GTAC 2 cut(s) 103, 168
CviAII CATG 5 cut(s) 210, 410, 469, 614, 790
CviQI GTAC 2 cut(s) 103, 168
DpnI GATC 5 cut(s) 95, 150, 282, 435, 590
DpnII GATC 5 cut(s) 93, 148, 280, 433, 588
EaeI YGGCCR 2 cut(s) 86, 262
EagI CGGCCG 2 cut(s) 86, 262
Eam1104I CTCTTC 2 cut(s) 384, 501
EarI CTCTTC 2 cut(s) 384, 501
EclXI CGGCCG 2 cut(s) 86, 262
Eco130I CCWWGG 3 cut(s) 209, 409, 643
Eco24I GRGCYC 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 720
Eco52I CGGCCG 2 cut(s) 86, 262
Eco88I CYCGRG 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 708
EcoT14I CCWWGG 3 cut(s) 209, 409, 643
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 3 cut(s) 209, 409, 643
FaeI CATG 5 cut(s) 213, 413, 472, 617, 793
FalI AAGNNNNNCTT 4 cut(s) 476, 508, 521, 553
FaqI GGGAC 1 cut(s) 644
FatI CATG 5 cut(s) 209, 409, 468, 613, 789
FbaI TGATCA 3 cut(s) 93, 433, 588
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 2 cut(s) 44, 137
GlaI GCGC 1 cut(s) 551
GluI GCNGC 1 cut(s) 553
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 3 cut(s) 196, 305, 744
HaeIII GGCC 3 cut(s) 88, 194, 264
HapII CCGG 4 cut(s) 85, 224, 261, 265
HgaI GACGC 1 cut(s) 641
HhaI GCGC 1 cut(s) 552
Hin1II CATG 5 cut(s) 213, 413, 472, 617, 793
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 4 cut(s) 68, 205, 220, 583
HpaII CCGG 4 cut(s) 85, 224, 261, 265
HphI GGTGA 3 cut(s) 250, 350, 465
Hpy188I TCNGA 2 cut(s) 588, 673
Hpy188III TCNNGA 6 cut(s) 10, 224, 284, 460, 605, 723
HpyAV CCTTC 4 cut(s) 32, 241, 457, 551
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 442, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 547
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 5 cut(s) 213, 413, 472, 617, 793
HspAI GCGC 1 cut(s) 550
Kpn2I TCCGGA 1 cut(s) 223
Ksp22I TGATCA 3 cut(s) 93, 433, 588
Kzo9I GATC 5 cut(s) 93, 148, 280, 433, 588
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 44, 137
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 256, 471, 571
MalI GATC 5 cut(s) 95, 150, 282, 435, 590
MbiI CCGCTC 1 cut(s) 768
MboI GATC 5 cut(s) 93, 148, 280, 433, 588
MboII GAAGA 5 cut(s) 158, 226, 371, 383, 518
MhlI GDGCHC 2 cut(s) 114, 123
MluCI AATT 5 cut(s) 14, 650, 660, 708, 718
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 307
MroI TCCGGA 1 cut(s) 223
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 4 cut(s) 85, 224, 261, 265
MspR9I CCNGG 2 cut(s) 85, 266
MwoI GCNNNNNNNGC 2 cut(s) 118, 547
NciI CCSGG 2 cut(s) 85, 266
NcoI CCATGG 2 cut(s) 209, 409
NdeII GATC 5 cut(s) 93, 148, 280, 433, 588
NlaIII CATG 5 cut(s) 213, 413, 472, 617, 793
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 256, 471
NspI RCATGY 1 cut(s) 472
PaqCI CACCTGC 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 3 cut(s) 205, 220, 583
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 554
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 2 cut(s) 104, 169
RsaNI GTAC 2 cut(s) 103, 168
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 5 cut(s) 93, 148, 280, 433, 588
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 85, 266
SduI GDGCHC 2 cut(s) 114, 123
SfaNI GCATC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 5 cut(s) 14, 650, 660, 708, 718
SsiI CCGC 2 cut(s) 32, 766
SspMI CTAG 2 cut(s) 44, 137
StyD4I CCNGG 2 cut(s) 83, 264
StyI CCWWGG 3 cut(s) 209, 409, 643
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 66, 99, 363, 459, 604
TasI AATT 5 cut(s) 14, 650, 660, 708, 718
TfiI GAWTC 3 cut(s) 205, 220, 583
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 3 cut(s) 170, 550, 737
TseFI GTSAC 2 cut(s) 256, 471
TseI GCWGC 1 cut(s) 552
Tsp45I GTSAC 2 cut(s) 256, 471
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 3 cut(s) 170, 550, 737
Tth111I GACNNNGTC 1 cut(s) 254
XapI RAATTY 3 cut(s) 14, 708, 718
XceI RCATGY 1 cut(s) 472
XspI CTAG 2 cut(s) 44, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.