pycom01g18850

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010270
Physical Location & Seq
Forward (+)
17673323 .. 17676057
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18850.2

Sequence Viewer

Length: 798 bp
ATGAACTTTTTGAAAACTTTCCTTCTTTTTTCCCTGCTTCCGGTGGCGTTTTCTCACGAGACCTTCGACTCCCGCCTCCTGCCGCGGCCGTTGATCCTTGAATACCCAGACATCGCCGCCCACTTCAATGATTTGGAGAATGAGCTCAGATTACACTGCGACAGCTGGAGATTTTCTGTGGAGGCAAACAATGTCAATCCCTGGAAAACAATCCCGGAGGAGTGCGCCGAGTATGTCAAGGATTACTTGACGGGTCGGGCTTACGAATTCGATCTCGAAAGGGTGTCTAAGGAGGCTGGGGTTTATGCCAAGCGTGTTGAATTGAATGGCGACGGGAAGGATGTGTGGATTTTCGACATTGATGACACTTTGCTTTCCAACCTTCCCTATTATGCTGACCATGGTTATGGCTTGGAGGTATTTGATACGGTGGAGTTTGATAAGTGGGTTGAGAAGGCCATGGCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTCTTGGGTTTGGGTTTTAAGGTTTTCTTGCTCACGGGGCGCACCGAAGGGAAAAGGAAGGTTACTGTTGAGAATCTGAACAATGCAGGATTCCGAGAATGGCATAAGCTTATTTTGAGGTCCGCTGATGACCACGAGAAATTGGCGATAATTTACAAGTCCGAAAAGAGGAGTGAGATGGAAAGGGAGGGATATAGACTGCTTGGGAATTCCGGAGACCAGTGGAGTGATTTGCTGGGTACCTCAGTCGCCCTCCGCTCGTTCAAGCTTCCGAATCCAATGTATTACATTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

266

Amino Acids

30.72

Weight (kDa)

5.21

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 475
Acc65I GGTACC 1 cut(s) 740
AccB1I GGYRCC 2 cut(s) 463, 740
AccBSI CCGCTC 1 cut(s) 759
AccII CGCG 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 713
AciI CCGC 6 cut(s) 73, 83, 85, 117, 624, 757
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 266, 709
AfaI GTAC 1 cut(s) 742
AfiI CCNNNNNNNGG 2 cut(s) 40, 669
AgsI TTSAA 7 cut(s) 13, 101, 127, 320, 325, 487, 766
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 5 cut(s) 145, 165, 483, 610, 769
AluI AGCT 5 cut(s) 145, 165, 483, 610, 769
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 53, 711
AlwI GGATC 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 713
AoxI GGCC 2 cut(s) 86, 456
ApoI RAATTY 2 cut(s) 266, 709
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 740
AspLEI GCGC 2 cut(s) 227, 543
AspS9I GGNCC 1 cut(s) 621
AsuC2I CCSGG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 621
BaeI ACNNNNGTAYC 2 cut(s) 732, 765
BanI GGYRCC 2 cut(s) 463, 740
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 2 cut(s) 56, 635
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 1 cut(s) 673
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 202
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 53, 711
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 3 cut(s) 83, 86, 117
BlsI GCNGC 3 cut(s) 84, 87, 118
Bme1390I CCNGG 2 cut(s) 202, 215
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 2 cut(s) 465, 742
BmrFI CCNGG 2 cut(s) 202, 215
BpmI CTGGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 215
BsaI GGTCTC 2 cut(s) 53, 711
BsaJI CCNNGG 4 cut(s) 83, 200, 400, 459
BsaWI WCCGGW 2 cut(s) 40, 713
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 669
Bse1I ACTGG 1 cut(s) 721
BseAI TCCGGA 1 cut(s) 713
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 4 cut(s) 83, 200, 400, 459
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 40, 669
BseMII CTCAG 2 cut(s) 160, 759
BseNI ACTGG 1 cut(s) 721
BseRI GAGGAG 2 cut(s) 233, 685
BseX3I CGGCCG 1 cut(s) 86
BseYI CCCAGC 2 cut(s) 296, 736
Bsh1236I CGCG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 458
BshNI GGYRCC 2 cut(s) 463, 740
BsiEI CGRYCG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 3 cut(s) 41, 215, 714
BslI CCNNNNNNNGG 2 cut(s) 40, 669
BsmAI GTCTC 2 cut(s) 53, 711
BsnI GGCC 2 cut(s) 88, 458
Bso31I GGTCTC 2 cut(s) 53, 711
Bsp1286I GDGCHC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 713
Bsp143I GATC 2 cut(s) 93, 271
Bsp19I CCATGG 2 cut(s) 400, 459
BspACI CCGC 6 cut(s) 73, 83, 85, 117, 624, 757
BspANI GGCC 2 cut(s) 88, 458
BspCNI CTCAG 2 cut(s) 159, 758
BspEI TCCGGA 1 cut(s) 713
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 465, 742
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 1 cut(s) 88
BspT107I GGYRCC 2 cut(s) 463, 740
BspTNI GGTCTC 2 cut(s) 53, 711
BsrBI CCGCTC 1 cut(s) 759
BsrI ACTGG 1 cut(s) 721
BssECI CCNNGG 4 cut(s) 83, 200, 400, 459
BssMI GATC 2 cut(s) 93, 271
BssSI CACGAG 2 cut(s) 56, 635
BssT1I CCWWGG 2 cut(s) 400, 459
Bst2BI CACGAG 2 cut(s) 56, 635
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 430, 568
Bst6I CTCTTC 1 cut(s) 492
BstDEI CTNAG 3 cut(s) 146, 288, 745
BstDSI CCRYGG 3 cut(s) 83, 400, 459
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 2 cut(s) 227, 543
BstKTI GATC 2 cut(s) 96, 274
BstMAI GTCTC 2 cut(s) 53, 711
BstMBI GATC 2 cut(s) 93, 271
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 538
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 200, 213
BstUI CGCG 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 407
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 88, 458
BtgI CCRYGG 3 cut(s) 83, 400, 459
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 154, 728
BveI ACCTGC 1 cut(s) 475
CfoI GCGC 2 cut(s) 227, 543
Cfr13I GGNCC 1 cut(s) 621
Cfr42I CCGCGG 1 cut(s) 86
Csp6I GTAC 1 cut(s) 741
CviAII CATG 2 cut(s) 401, 460
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 3 cut(s) 146, 288, 745
DpnI GATC 2 cut(s) 95, 273
DpnII GATC 2 cut(s) 93, 271
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 2 cut(s) 400, 459
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 2 cut(s) 53, 711
Eco47I GGWCC 1 cut(s) 621
Eco52I CGGCCG 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 2 cut(s) 266, 709
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 2 cut(s) 400, 459
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 400, 459
FaeI CATG 2 cut(s) 404, 463
FalI AAGNNNNNCTT 6 cut(s) 230, 262, 467, 499, 512, 544
FatI CATG 2 cut(s) 400, 459
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 83, 86, 117
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 83, 86, 117
GlaI GCGC 2 cut(s) 226, 542
GluI GCNGC 3 cut(s) 83, 86, 117
GsaI CCCAGC 2 cut(s) 300, 740
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 2 cut(s) 88, 458
HapII CCGG 3 cut(s) 41, 215, 714
HhaI GCGC 2 cut(s) 227, 543
Hin1II CATG 2 cut(s) 404, 463
Hin6I GCGC 2 cut(s) 225, 541
HinP1I GCGC 2 cut(s) 225, 541
HindIII AAGCTT 2 cut(s) 608, 767
HinfI GANTC 4 cut(s) 68, 574, 591, 775
HpaII CCGG 3 cut(s) 41, 215, 714
Hpy188I TCNGA 5 cut(s) 149, 579, 596, 664, 774
Hpy188III TCNNGA 3 cut(s) 56, 275, 714
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 7 cut(s) 32, 73, 331, 392, 448, 542, 553
HpyCH4III ACNGT 2 cut(s) 430, 568
HpyCH4V TGCA 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 538
HpyF3I CTNAG 3 cut(s) 146, 288, 745
Hsp92II CATG 2 cut(s) 404, 463
HspAI GCGC 2 cut(s) 225, 541
Kpn2I TCCGGA 1 cut(s) 713
KpnI GGTACC 1 cut(s) 744
KspI CCGCGG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 93, 271
MaeIII GTNAC 1 cut(s) 562
MalI GATC 2 cut(s) 95, 273
MbiI CCGCTC 1 cut(s) 759
MboI GATC 2 cut(s) 93, 271
MboII GAAGA 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 5 cut(s) 266, 320, 641, 651, 709
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 402
MroI TCCGGA 1 cut(s) 713
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 2 cut(s) 126, 405
MspA1I CMGCKG 3 cut(s) 85, 165, 626
MspI CCGG 3 cut(s) 41, 215, 714
MspR9I CCNGG 2 cut(s) 202, 215
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 538
NciI CCSGG 1 cut(s) 215
NcoI CCATGG 2 cut(s) 400, 459
NdeII GATC 2 cut(s) 93, 271
NlaIII CATG 2 cut(s) 404, 463
NlaIV GGNNCC 2 cut(s) 465, 742
NmeAIII GCCGAG 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 3 cut(s) 574, 591, 775
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 3 cut(s) 84, 87, 118
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 200
PspFI CCCAGC 2 cut(s) 296, 736
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 465, 742
PspPI GGNCC 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 165
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
RseI CAYNNNNRTG 2 cut(s) 126, 405
SacI GAGCTC 1 cut(s) 147
SacII CCGCGG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 83, 86, 117
Sau3AI GATC 2 cut(s) 93, 271
Sau96I GGNCC 1 cut(s) 621
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 202, 215
SduI GDGCHC 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 86
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 2 cut(s) 126, 405
Sse9I AATT 5 cut(s) 266, 320, 641, 651, 709
SsiI CCGC 6 cut(s) 73, 83, 85, 117, 624, 757
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 200, 213
StyI CCWWGG 2 cut(s) 400, 459
TaaI ACNGT 2 cut(s) 430, 568
TaqI TCGA 4 cut(s) 66, 270, 276, 354
TasI AATT 5 cut(s) 266, 320, 641, 651, 709
TauI GCSGC 3 cut(s) 85, 88, 119
TfiI GAWTC 3 cut(s) 574, 591, 775
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 161, 728
TspDTI ATGAA 2 cut(s) 17, 510
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 2 cut(s) 161, 728
VpaK11BI GGWCC 1 cut(s) 621
XapI RAATTY 2 cut(s) 266, 709
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.