RLG00000026804

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010270
Physical Location & Seq
Reverse (-)
6160235 .. 6163478
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026804

Sequence Viewer

Length: 1011 bp
ATGATTTTCTGGAAATTTCTCCTTCTGTTTCCGCTACTAACCCTAGCTTTCTCCCACGAACCTTTCGACTCCCACCACCTACCCCGGCCGTTGATCATCGAGTACCCCGAGCGCGCCGAGCCCCGTTTCAAGGAGCTAGAGGAAGAGCTCAACCTACACTGTACGAGCTGGAGGTTTTCGGTGGAGGCTAACAATGTGAATCCATGGAAGACGATTCCGGAGGAGTGTGGAGAGTATGTGAAGGACTACGTCACCGGCCGGGGTTTTGGGGTTGATCTGGAGAGGGTTGCTAATGATGCTGGGGTTTATGCCAAGAGTGTTGATTTGAGTGGTGATGGCAAAGATGTGTGGATTTTCGATGTTGATGATACTCTTCTGTCTAATCTTCCGTATTACGCCGACCATGGTTATGGCTTGGAGGTTTTTGATCAGTTGGAGTTTGATAAGTGGGTCGAGAAGGGCATGGCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTTTTGGGCTTGGGCTTTAAGGTATTCTTGCTCACTGGGCGCAGCGAAGGGAAAAGAGGGGTTACGATTGAGAATCTGATCAATGCTGGATTTCAAGATTGGCATAAGCTTATTTTGAGGGACGCAAATGACCAAGGGAAATTAGCTACAATTTTCAAATCAGAGAAAAGAGGCGAGATGGAAAAAGAGGGATACAGAATTCTTGGAAATTCTGGAGACCAGTGGAGTGATTTATTGGGTAGCTCAATGTCCATCCGCTCATTCAAGCTTCCCAATCCCATGTACACTTGTTTTCGTGCTCCTCCTAGCCAAAACTGTAGTAGAGCTGATTGGCGTGGGAAGTGGACAATGCAAAATCCAGATTCCTTCCTACTTACACATTGGACCACTGGTGCGTCACGTGGTGGAATGGGGACCCACCAGTTTGATATTGATAAGCTAGGCGAAAAAACATCTCATTCTTTGGTGATTAGCCCCACCAAACAACTCATCAATCTGCGCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

337

Amino Acids

38.4

Weight (kDa)

5.78

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 44 - 264 7e-84 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 762
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 2 cut(s) 32, 760
AcoI YGGCCR 2 cut(s) 86, 256
AcsI RAATTY 3 cut(s) 14, 702, 712
AcvI CACGTG 1 cut(s) 905
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 3 cut(s) 104, 163, 788
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 5 cut(s) 130, 490, 599, 661, 769
Alw21I GWGCWC 2 cut(s) 150, 805
Alw26I GTCTC 1 cut(s) 714
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 2 cut(s) 86, 256
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 3 cut(s) 14, 702, 712
AspLEI GCGC 4 cut(s) 114, 116, 546, 1005
AspS9I GGNCC 2 cut(s) 888, 918
AsuC2I CCSGG 2 cut(s) 85, 260
AsuHPI GGTGA 3 cut(s) 244, 344, 982
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 2 cut(s) 888, 918
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 2 cut(s) 123, 150
BbrPI CACGTG 1 cut(s) 905
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 150, 805
BbvI GCAGC 1 cut(s) 558
BccI CCATC 3 cut(s) 329, 676, 764
BceAI ACGGC 2 cut(s) 73, 990
BciVI GTATCC 1 cut(s) 689
BclI TGATCA 3 cut(s) 93, 427, 582
BcnI CCSGG 2 cut(s) 85, 260
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 4 cut(s) 44, 137, 810, 944
BfmI CTRYAG 1 cut(s) 820
BfuAI ACCTGC 1 cut(s) 478
BfuI GTATCC 1 cut(s) 689
BisI GCNGC 1 cut(s) 547
BlsI GCNGC 1 cut(s) 548
Bme1390I CCNGG 2 cut(s) 85, 260
Bme18I GGWCC 2 cut(s) 888, 918
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 888, 918
BmiI GGNNCC 3 cut(s) 468, 919, 920
BmrFI CCNGG 2 cut(s) 85, 260
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 3 cut(s) 190, 299, 738
BpuMI CCSGG 2 cut(s) 85, 260
BsaAI YACGTR 1 cut(s) 905
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 5 cut(s) 83, 203, 259, 403, 637
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 4 cut(s) 544, 724, 898, 925
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 5 cut(s) 83, 203, 259, 403, 637
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 4 cut(s) 544, 724, 898, 925
BsePI GCGCGC 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 236, 795
BseX3I CGGCCG 2 cut(s) 86, 256
BseXI GCAGC 1 cut(s) 558
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 2 cut(s) 89, 259
BshFI GGCC 2 cut(s) 88, 258
BshNI GGYRCC 1 cut(s) 466
BsiEI CGRYCG 2 cut(s) 89, 259
BsiHKAI GWGCWC 2 cut(s) 150, 805
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 85, 218, 255, 259
BslFI GGGAC 2 cut(s) 638, 931
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 2 cut(s) 638, 931
BsnI GGCC 2 cut(s) 88, 258
Bso31I GGTCTC 1 cut(s) 714
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 123, 150, 805
Bsp13I TCCGGA 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 4 cut(s) 93, 274, 427, 582
Bsp19I CCATGG 2 cut(s) 203, 403
BspACI CCGC 2 cut(s) 32, 760
BspANI GGCC 2 cut(s) 88, 258
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 468, 919, 920
BspMI ACCTGC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 714
BsrBI CCGCTC 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 4 cut(s) 544, 724, 898, 925
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 5 cut(s) 83, 203, 259, 403, 637
BssHII GCGCGC 1 cut(s) 112
BssMI GATC 4 cut(s) 93, 274, 427, 582
BssT1I CCWWGG 3 cut(s) 203, 403, 637
Bst4CI ACNGT 2 cut(s) 161, 821
Bst6I CTCTTC 3 cut(s) 138, 378, 495
BstAUI TGTACA 1 cut(s) 786
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 203, 403
BstF5I GGATG 1 cut(s) 756
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 4 cut(s) 114, 116, 546, 1005
BstKTI GATC 4 cut(s) 96, 277, 430, 585
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 4 cut(s) 93, 274, 427, 582
BstMCI CGRYCG 2 cut(s) 89, 259
BstMWI GCNNNNNNNGC 3 cut(s) 118, 296, 541
BstSCI CCNGG 2 cut(s) 83, 258
BstSFI CTRYAG 1 cut(s) 820
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 558
BstV2I GAAGAC 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 410
BstZI CGGCCG 2 cut(s) 86, 256
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 88, 258
BtgI CCRYGG 2 cut(s) 203, 403
BtsCI GGATG 1 cut(s) 756
BtsIMutI CAGTG 4 cut(s) 157, 537, 731, 891
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 4 cut(s) 114, 116, 546, 1005
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 888, 918
CseI GACGC 2 cut(s) 635, 888
Csp6I GTAC 3 cut(s) 103, 162, 787
CviAII CATG 4 cut(s) 204, 404, 463, 784
CviQI GTAC 3 cut(s) 103, 162, 787
DpnI GATC 4 cut(s) 95, 276, 429, 584
DpnII GATC 4 cut(s) 93, 274, 427, 582
DraIII CACNNNGTG 1 cut(s) 908
EaeI YGGCCR 2 cut(s) 86, 256
EagI CGGCCG 2 cut(s) 86, 256
Eam1104I CTCTTC 3 cut(s) 138, 378, 495
EarI CTCTTC 3 cut(s) 138, 378, 495
Ecl136II GAGCTC 1 cut(s) 148
EclXI CGGCCG 2 cut(s) 86, 256
Eco130I CCWWGG 3 cut(s) 203, 403, 637
Eco24I GRGCYC 2 cut(s) 123, 150
Eco31I GGTCTC 1 cut(s) 714
Eco47I GGWCC 2 cut(s) 888, 918
Eco52I CGGCCG 2 cut(s) 86, 256
Eco53kI GAGCTC 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 905
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 918
EcoRI GAATTC 1 cut(s) 702
EcoT14I CCWWGG 3 cut(s) 203, 403, 637
EcoT38I GRGCYC 2 cut(s) 123, 150
ErhI CCWWGG 3 cut(s) 203, 403, 637
FaeI CATG 4 cut(s) 207, 407, 466, 787
FalI AAGNNNNNCTT 4 cut(s) 470, 502, 515, 547
FaqI GGGAC 2 cut(s) 638, 931
FatI CATG 4 cut(s) 203, 403, 462, 783
FbaI TGATCA 3 cut(s) 93, 427, 582
Fnu4HI GCNGC 1 cut(s) 547
FokI GGATG 1 cut(s) 743
FriOI GRGCYC 2 cut(s) 123, 150
Fsp4HI GCNGC 1 cut(s) 547
FspBI CTAG 4 cut(s) 44, 137, 810, 944
GlaI GCGC 4 cut(s) 113, 115, 545, 1004
GluI GCNGC 1 cut(s) 547
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 3 cut(s) 190, 299, 738
HaeIII GGCC 2 cut(s) 88, 258
HapII CCGG 4 cut(s) 85, 218, 255, 259
HgaI GACGC 2 cut(s) 635, 888
HhaI GCGC 4 cut(s) 114, 116, 546, 1005
Hin1II CATG 4 cut(s) 207, 407, 466, 787
Hin6I GCGC 4 cut(s) 112, 114, 544, 1003
HinP1I GCGC 4 cut(s) 112, 114, 544, 1003
HindIII AAGCTT 2 cut(s) 611, 770
HinfI GANTC 5 cut(s) 68, 199, 214, 577, 866
HpaII CCGG 4 cut(s) 85, 218, 255, 259
HphI GGTGA 3 cut(s) 244, 344, 982
Hpy166II GTNNAC 2 cut(s) 789, 849
Hpy188I TCNGA 2 cut(s) 582, 667
Hpy188III TCNNGA 7 cut(s) 10, 218, 278, 454, 599, 717, 863
Hpy8I GTNNAC 2 cut(s) 789, 849
HpyAV CCTTC 5 cut(s) 32, 235, 451, 545, 880
HpyCH4III ACNGT 2 cut(s) 161, 821
HpyCH4IV ACGT 2 cut(s) 249, 904
HpyCH4V TGCA 1 cut(s) 856
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 296, 541
HpySE526I ACGT 2 cut(s) 249, 904
Hsp92II CATG 4 cut(s) 207, 407, 466, 787
HspAI GCGC 4 cut(s) 112, 114, 544, 1003
KflI GGGWCCC 1 cut(s) 918
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 3 cut(s) 93, 427, 582
Kzo9I GATC 4 cut(s) 93, 274, 427, 582
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 133, 808
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 1 cut(s) 286
MaeI CTAG 4 cut(s) 44, 137, 810, 944
MaeII ACGT 2 cut(s) 249, 904
MaeIII GTNAC 3 cut(s) 250, 565, 900
MalI GATC 4 cut(s) 95, 276, 429, 584
MbiI CCGCTC 1 cut(s) 762
MboI GATC 4 cut(s) 93, 274, 427, 582
MboII GAAGA 5 cut(s) 155, 220, 365, 377, 512
MhlI GDGCHC 3 cut(s) 123, 150, 805
MluCI AATT 5 cut(s) 14, 644, 654, 702, 712
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 414
MroI TCCGGA 1 cut(s) 217
MseI TTAA 2 cut(s) 522, 1009
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 4 cut(s) 85, 218, 255, 259
MspR9I CCNGG 2 cut(s) 85, 260
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 118, 296, 541
NciI CCSGG 2 cut(s) 85, 260
NcoI CCATGG 2 cut(s) 203, 403
NdeII GATC 4 cut(s) 93, 274, 427, 582
NlaIII CATG 4 cut(s) 207, 407, 466, 787
NlaIV GGNNCC 3 cut(s) 468, 919, 920
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 250, 900
PaqCI CACCTGC 1 cut(s) 478
PauI GCGCGC 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 105
PfeI GAWTC 4 cut(s) 199, 214, 577, 866
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 548
PleI GAGTC 1 cut(s) 62
PmaCI CACGTG 1 cut(s) 905
PmlI CACGTG 1 cut(s) 905
PpsI GAGTC 1 cut(s) 62
Ppu21I YACGTR 1 cut(s) 905
PpuMI RGGWCCY 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 918
PspCI CACGTG 1 cut(s) 905
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 468, 919, 920
PspPI GGNCC 2 cut(s) 888, 918
PspPPI RGGWCCY 1 cut(s) 918
PsyI GACNNNGTC 1 cut(s) 248
PteI GCGCGC 1 cut(s) 112
RsaI GTAC 3 cut(s) 104, 163, 788
RsaNI GTAC 3 cut(s) 103, 162, 787
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 522, 1009
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 4 cut(s) 93, 274, 427, 582
Sau96I GGNCC 2 cut(s) 888, 918
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 85, 260
SduI GDGCHC 3 cut(s) 123, 150, 805
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 820
SinI GGWCC 2 cut(s) 888, 918
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 5 cut(s) 14, 644, 654, 702, 712
SsiI CCGC 2 cut(s) 32, 760
SspMI CTAG 4 cut(s) 44, 137, 810, 944
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 83, 258
StyI CCWWGG 3 cut(s) 203, 403, 637
TaaI ACNGT 2 cut(s) 161, 821
TaiI ACGT 2 cut(s) 252, 907
TaqI TCGA 4 cut(s) 66, 99, 357, 453
TasI AATT 5 cut(s) 14, 644, 654, 702, 712
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 4 cut(s) 199, 214, 577, 866
Tru1I TTAA 2 cut(s) 522, 1009
Tru9I TTAA 2 cut(s) 522, 1009
TscAI CASTG 4 cut(s) 164, 544, 731, 898
TseFI GTSAC 2 cut(s) 250, 900
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 2 cut(s) 250, 900
TspDTI ATGAA 1 cut(s) 513
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 4 cut(s) 164, 544, 731, 898
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 888, 918
XapI RAATTY 3 cut(s) 14, 702, 712
XspI CTAG 4 cut(s) 44, 137, 810, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.