FvH4_7g27010

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010270
Physical Location & Seq
Forward (+)
20280727 .. 20283231
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27010.t1

Sequence Viewer

Length: 804 bp
ATGATATTCTTCAAGTTCCTCCTTCTCTTTCCTCTTTTAACCCTAGCTTTCTCCCATGAGGCCCTCAGCCCCCACCACCTGCCTAGACCCTTGATCATCGAGTACCCCGATCACCACGCCGAGCCCAATTTCAAGGAGCTTGATGAGGAGGTCAAGCTGCGCTGTACCAGCTGGAGGTTTGCTGTGGAGGCTAACAATGTGAATCCGTGGAAGACGATCCCGGAGGAATGTGTGGAGTATGTGAAGGACTACGTCACCGGCCGGGGTTATAGTGTTGATTTGGAGAGGGTTTCGAATGAGGCTGGGATTTATGTTAAGAGTGTTGTGTTGGGTGGTGATGGCAAAGATGTGTGGATTTTCGATGTGGATGATACGCTCTTGTCGAATGTTCCGTATTATGCTGATCATGGTTATGGCTCGGAGGTTTTTGATCAGGTGGAGTTTGATAAGTGGGTCGACAAGGGAATGTCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTTTTAGGCTTGGGGTTTAAGGTTTTCTTGCTCACTGGGCGCAGCGAAGGGAAAAGAGGGGTTACTGCTGAGAATCTGAAAAATGTGGGATTTCAAGATTGGCATAAGCTTATATTGAGGGCTGCAGATGACCATGGGAAATCAGCTACAATTTACAAATCAGAGAAAAGAAGCGAGATGGAAAAAGAGGGATACAGAATTCTTGGAAACTCTGGAGACCAGTGGAGTGATTTATTGGGTAGCTCAATGTCCATCCGCTCATTCAAGCTTCCCAATCCCATGTATTACATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

268

Amino Acids

30.5

Weight (kDa)

5.43

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 46 - 267 3.4e-88 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 87, 481
Acc36I ACCTGC 2 cut(s) 87, 481
AccBSI CCGCTC 1 cut(s) 765
AccI GTMKAC 1 cut(s) 456
AciI CCGC 1 cut(s) 763
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 705
AfaI GTAC 2 cut(s) 104, 166
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 5 cut(s) 13, 133, 493, 602, 772
AluBI AGCT 9 cut(s) 47, 139, 157, 171, 489, 616, 653, 750, 775
AluI AGCT 9 cut(s) 47, 139, 157, 171, 489, 616, 653, 750, 775
Alw26I GTCTC 1 cut(s) 717
AlwI GGATC 1 cut(s) 211
AoxI GGCC 2 cut(s) 60, 259
ApeKI GCWGC 3 cut(s) 157, 549, 629
ApoI RAATTY 1 cut(s) 705
AspLEI GCGC 2 cut(s) 162, 549
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 2 cut(s) 221, 263
AsuHPI GGTGA 4 cut(s) 104, 247, 347, 462
AsuII TTCGAA 1 cut(s) 293
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 144, 561, 616
BccI CCATC 3 cut(s) 332, 679, 767
BciVI GTATCC 1 cut(s) 692
BclI TGATCA 3 cut(s) 93, 403, 430
BcnI CCSGG 2 cut(s) 221, 263
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 2 cut(s) 44, 84
BfmI CTRYAG 1 cut(s) 630
BfuAI ACCTGC 2 cut(s) 87, 481
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 3 cut(s) 158, 550, 630
BlsI GCNGC 3 cut(s) 159, 551, 631
Bme1390I CCNGG 2 cut(s) 221, 263
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 221, 263
BmrI ACTGGG 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 2 cut(s) 193, 741
Bpu10I CCTNAGC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 221, 263
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 3 cut(s) 206, 262, 640
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 547, 727
BseDI CCNNGG 3 cut(s) 206, 262, 640
BseGI GGATG 2 cut(s) 373, 759
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 79, 567
BseNI ACTGG 2 cut(s) 547, 727
BseRI GAGGAG 1 cut(s) 161
BseX3I CGGCCG 1 cut(s) 259
BseXI GCAGC 3 cut(s) 144, 561, 616
BseYI CCCAGC 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 2 cut(s) 62, 261
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 3 cut(s) 221, 258, 262
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 717
BsnI GGCC 2 cut(s) 62, 261
Bso31I GGTCTC 1 cut(s) 717
Bsp119I TTCGAA 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 5 cut(s) 93, 109, 216, 403, 430
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 1 cut(s) 763
BspANI GGCC 2 cut(s) 62, 261
BspCNI CTCAG 2 cut(s) 78, 568
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 2 cut(s) 87, 481
BspPI GGATC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 717
BsrBI CCGCTC 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 2 cut(s) 547, 727
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 206, 262, 640
BssMI GATC 5 cut(s) 93, 109, 216, 403, 430
BssT1I CCWWGG 1 cut(s) 640
Bst6I CTCTTC 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 65, 576
BstDSI CCRYGG 2 cut(s) 206, 640
BstF5I GGATG 2 cut(s) 373, 759
BstHHI GCGC 2 cut(s) 162, 549
BstKTI GATC 5 cut(s) 96, 112, 219, 406, 433
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 5 cut(s) 93, 109, 216, 403, 430
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 168, 188, 544
BstSCI CCNGG 2 cut(s) 219, 261
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 3 cut(s) 144, 561, 616
BstV2I GAAGAC 1 cut(s) 218
BstZI CGGCCG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 2 cut(s) 62, 261
BtgI CCRYGG 2 cut(s) 206, 640
BtsCI GGATG 2 cut(s) 373, 759
BtsIMutI CAGTG 2 cut(s) 540, 734
BveI ACCTGC 2 cut(s) 87, 481
CfoI GCGC 2 cut(s) 162, 549
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 103, 165
CviAII CATG 4 cut(s) 56, 407, 641, 787
CviQI GTAC 2 cut(s) 103, 165
DdeI CTNAG 2 cut(s) 65, 576
DpnI GATC 5 cut(s) 95, 111, 218, 405, 432
DpnII GATC 5 cut(s) 93, 109, 216, 403, 430
EaeI YGGCCR 1 cut(s) 259
EagI CGGCCG 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
EclXI CGGCCG 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 717
Eco52I CGGCCG 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 4 cut(s) 59, 410, 644, 790
FalI AAGNNNNNCTT 4 cut(s) 473, 505, 518, 550
FatI CATG 4 cut(s) 55, 406, 640, 786
FbaI TGATCA 3 cut(s) 93, 403, 430
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 3 cut(s) 158, 550, 630
FokI GGATG 2 cut(s) 380, 746
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 158, 550, 630
FspBI CTAG 2 cut(s) 44, 84
GlaI GCGC 2 cut(s) 161, 548
GluI GCNGC 3 cut(s) 158, 550, 630
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 2 cut(s) 193, 741
HaeIII GGCC 2 cut(s) 62, 261
HapII CCGG 3 cut(s) 221, 258, 262
HhaI GCGC 2 cut(s) 162, 549
Hin1II CATG 4 cut(s) 59, 410, 644, 790
Hin6I GCGC 2 cut(s) 160, 547
HinP1I GCGC 2 cut(s) 160, 547
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 2 cut(s) 614, 773
HinfI GANTC 2 cut(s) 202, 580
HpaII CCGG 3 cut(s) 221, 258, 262
HphI GGTGA 4 cut(s) 104, 247, 347, 462
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 3 cut(s) 421, 585, 670
Hpy188III TCNNGA 2 cut(s) 602, 720
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 3 cut(s) 32, 238, 548
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 188, 544
HpyF3I CTNAG 2 cut(s) 65, 576
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 4 cut(s) 59, 410, 644, 790
HspAI GCGC 2 cut(s) 160, 547
Ksp22I TGATCA 3 cut(s) 93, 403, 430
Kzo9I GATC 5 cut(s) 93, 109, 216, 403, 430
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 3 cut(s) 144, 561, 616
MaeI CTAG 2 cut(s) 44, 84
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 253, 468, 568
MalI GATC 5 cut(s) 95, 111, 218, 405, 432
MbiI CCGCTC 1 cut(s) 765
MboI GATC 5 cut(s) 93, 109, 216, 403, 430
MboII GAAGA 2 cut(s) 223, 515
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 3 cut(s) 127, 657, 705
MseI TTAA 3 cut(s) 38, 315, 525
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 3 cut(s) 221, 258, 262
MspR9I CCNGG 2 cut(s) 221, 263
MwoI GCNNNNNNNGC 3 cut(s) 168, 188, 544
NciI CCSGG 2 cut(s) 221, 263
NcoI CCATGG 1 cut(s) 640
NdeII GATC 5 cut(s) 93, 109, 216, 403, 430
NlaIII CATG 4 cut(s) 59, 410, 644, 790
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 2 cut(s) 253, 468
NspV TTCGAA 1 cut(s) 293
PaqCI CACCTGC 2 cut(s) 87, 481
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 380, 389
PfeI GAWTC 2 cut(s) 202, 580
PflFI GACNNNGTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 3 cut(s) 159, 551, 631
PspFI CCCAGC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 634
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 171
RsaI GTAC 2 cut(s) 104, 166
RsaNI GTAC 2 cut(s) 103, 165
RseI CAYNNNNRTG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 455
SaqAI TTAA 3 cut(s) 38, 315, 525
SatI GCNGC 3 cut(s) 158, 550, 630
Sau3AI GATC 5 cut(s) 93, 109, 216, 403, 430
Sau96I GGNCC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 221, 263
SduI GDGCHC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 411
Sse9I AATT 3 cut(s) 127, 657, 705
SsiI CCGC 1 cut(s) 763
SspMI CTAG 2 cut(s) 44, 84
StyD4I CCNGG 2 cut(s) 219, 261
StyI CCWWGG 1 cut(s) 640
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 99, 293, 360, 383, 456
TasI AATT 3 cut(s) 127, 657, 705
TfiI GAWTC 2 cut(s) 202, 580
Tru1I TTAA 3 cut(s) 38, 315, 525
Tru9I TTAA 3 cut(s) 38, 315, 525
TscAI CASTG 2 cut(s) 547, 734
TseFI GTSAC 2 cut(s) 253, 468
TseI GCWGC 3 cut(s) 157, 549, 629
Tsp45I GTSAC 2 cut(s) 253, 468
TspDTI ATGAA 1 cut(s) 516
TspGWI ACGGA 2 cut(s) 195, 381
TspRI CASTG 2 cut(s) 547, 734
Tth111I GACNNNGTC 1 cut(s) 251
XapI RAATTY 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 2 cut(s) 44, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.