Rh1BG353100

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010270
Physical Location & Seq
Forward (+)
48516664 .. 48520389
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG353100.1

Sequence Viewer

Length: 627 bp
ATGATTTTCTGGAAATTTCTCCTTCTGTTTCCGCTACTAACCCTAGCTTTCTCCCACGAATCTTTCGACCCCCACCACCTACCCCGGCCGTTGATCATCGAGTACCCCGAGCACGCCGAGCCCGGTTTCAAGGAGCTAGAGGAAGAGCTCAAGCTACACTGTACGAGCTGGAGGTTTTCGGTGGAGGCTAACAATGTGAATCCATGGAAGACGATTCCGGAGGAATGTGGAGAGTATGTGAAGGACTACGTCACCGGCCGGGCTTATGGGGTTGATCTGGAGAGGGTTTCTAATGATGCTGGGGTTTATGCCAAGAGCGTTGGATTGAGTGGTGATGGCAAAGATGTGTGGATTTTCGATGTTGATGATACTCTTCTGTCCAATCTTCCGTATTACGCCGACCATGGTTATGGCTTGGAGGTTTTTGATCAGTTGCAGTTTGATAAGTGGGTCGAGAAGGGCATGGCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTTTTGGGCTTGGGCTTTAAGGTATTCTTGCTCACTGGGCGCAGCGAAGGGAAAAGAGGGGTTACTATTGAGAATCTGATCAATGCAGGATTTCGAGATTGGCATAAGCTTATTTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

208

Amino Acids

23.87

Weight (kDa)

5.17

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 43 - 208 3.1e-58 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 466
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 1 cut(s) 32
AcoI YGGCCR 2 cut(s) 86, 256
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 2 cut(s) 104, 163
AgsI TTSAA 2 cut(s) 130, 490
AluBI AGCT 7 cut(s) 47, 136, 148, 154, 168, 486, 613
AluI AGCT 7 cut(s) 47, 136, 148, 154, 168, 486, 613
Alw21I GWGCWC 2 cut(s) 114, 150
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 2 cut(s) 86, 256
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 1 cut(s) 546
AsuC2I CCSGG 3 cut(s) 85, 123, 260
AsuHPI GGTGA 2 cut(s) 244, 344
AvaI CYCGRG 1 cut(s) 107
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 2 cut(s) 123, 150
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 114, 150
BbvI GCAGC 1 cut(s) 558
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 73
BclI TGATCA 3 cut(s) 93, 427, 582
BcnI CCSGG 3 cut(s) 85, 123, 260
BfaI CTAG 2 cut(s) 44, 137
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 1 cut(s) 547
BlsI GCNGC 1 cut(s) 548
Bme1390I CCNGG 3 cut(s) 85, 123, 260
BmeT110I CYCGRG 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 3 cut(s) 85, 123, 260
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 2 cut(s) 190, 299
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 3 cut(s) 85, 123, 260
BsaJI CCNNGG 3 cut(s) 83, 203, 403
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 544
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 83, 203, 403
BseNI ACTGG 1 cut(s) 544
BseX3I CGGCCG 2 cut(s) 86, 256
BseXI GCAGC 1 cut(s) 558
BseYI CCCAGC 1 cut(s) 299
Bsh1285I CGRYCG 2 cut(s) 89, 259
BshFI GGCC 2 cut(s) 88, 258
BshNI GGYRCC 1 cut(s) 466
BsiEI CGRYCG 2 cut(s) 89, 259
BsiHKAI GWGCWC 2 cut(s) 114, 150
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 5 cut(s) 85, 123, 218, 255, 259
BsnI GGCC 2 cut(s) 88, 258
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 114, 123, 150
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 4 cut(s) 93, 274, 427, 582
Bsp19I CCATGG 2 cut(s) 203, 403
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 88, 258
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 544
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 83, 203, 403
BssMI GATC 4 cut(s) 93, 274, 427, 582
BssT1I CCWWGG 2 cut(s) 203, 403
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 3 cut(s) 138, 378, 495
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 203, 403
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 96, 277, 430, 585
BstMBI GATC 4 cut(s) 93, 274, 427, 582
BstMCI CGRYCG 2 cut(s) 89, 259
BstMWI GCNNNNNNNGC 2 cut(s) 118, 541
BstSCI CCNGG 3 cut(s) 83, 121, 258
BstV1I GCAGC 1 cut(s) 558
BstV2I GAAGAC 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 410
BstZI CGGCCG 2 cut(s) 86, 256
BsuRI GGCC 2 cut(s) 88, 258
BtgI CCRYGG 2 cut(s) 203, 403
BtsIMutI CAGTG 2 cut(s) 157, 537
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 254
Csp6I GTAC 2 cut(s) 103, 162
CviAII CATG 3 cut(s) 204, 404, 463
CviQI GTAC 2 cut(s) 103, 162
DpnI GATC 4 cut(s) 95, 276, 429, 584
DpnII GATC 4 cut(s) 93, 274, 427, 582
EaeI YGGCCR 2 cut(s) 86, 256
EagI CGGCCG 2 cut(s) 86, 256
Eam1104I CTCTTC 3 cut(s) 138, 378, 495
EarI CTCTTC 3 cut(s) 138, 378, 495
Ecl136II GAGCTC 1 cut(s) 148
EclXI CGGCCG 2 cut(s) 86, 256
Eco130I CCWWGG 2 cut(s) 203, 403
Eco24I GRGCYC 2 cut(s) 123, 150
Eco52I CGGCCG 2 cut(s) 86, 256
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 203, 403
EcoT38I GRGCYC 2 cut(s) 123, 150
ErhI CCWWGG 2 cut(s) 203, 403
FaeI CATG 3 cut(s) 207, 407, 466
FalI AAGNNNNNCTT 4 cut(s) 470, 502, 515, 547
FatI CATG 3 cut(s) 203, 403, 462
FbaI TGATCA 3 cut(s) 93, 427, 582
Fnu4HI GCNGC 1 cut(s) 547
FriOI GRGCYC 2 cut(s) 123, 150
Fsp4HI GCNGC 1 cut(s) 547
FspBI CTAG 2 cut(s) 44, 137
GlaI GCGC 1 cut(s) 545
GluI GCNGC 1 cut(s) 547
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 2 cut(s) 190, 299
HaeIII GGCC 2 cut(s) 88, 258
HapII CCGG 5 cut(s) 85, 123, 218, 255, 259
HhaI GCGC 1 cut(s) 546
Hin1II CATG 3 cut(s) 207, 407, 466
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 4 cut(s) 59, 199, 214, 577
HpaII CCGG 5 cut(s) 85, 123, 218, 255, 259
HphI GGTGA 2 cut(s) 244, 344
Hpy188I TCNGA 1 cut(s) 582
Hpy188III TCNNGA 5 cut(s) 10, 218, 278, 454, 599
HpyAV CCTTC 4 cut(s) 32, 235, 451, 545
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 436, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 541
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 3 cut(s) 207, 407, 466
HspAI GCGC 1 cut(s) 544
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 3 cut(s) 93, 427, 582
Kzo9I GATC 4 cut(s) 93, 274, 427, 582
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 44, 137
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 250, 565
MalI GATC 4 cut(s) 95, 276, 429, 584
MboI GATC 4 cut(s) 93, 274, 427, 582
MboII GAAGA 5 cut(s) 155, 220, 365, 377, 512
MhlI GDGCHC 3 cut(s) 114, 123, 150
MluCI AATT 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 9 cut(s) 133, 165, 178, 214, 276, 412, 496, 554, 615
MroI TCCGGA 1 cut(s) 217
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 5 cut(s) 85, 123, 218, 255, 259
MspR9I CCNGG 3 cut(s) 85, 123, 260
MwoI GCNNNNNNNGC 2 cut(s) 118, 541
NciI CCSGG 3 cut(s) 85, 123, 260
NcoI CCATGG 2 cut(s) 203, 403
NdeII GATC 4 cut(s) 93, 274, 427, 582
NlaIII CATG 3 cut(s) 207, 407, 466
NlaIV GGNNCC 1 cut(s) 468
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 105
PfeI GAWTC 4 cut(s) 59, 199, 214, 577
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 548
Psp124BI GAGCTC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 2 cut(s) 104, 163
RsaNI GTAC 2 cut(s) 103, 162
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 4 cut(s) 93, 274, 427, 582
ScrFI CCNGG 3 cut(s) 85, 123, 260
SduI GDGCHC 3 cut(s) 114, 123, 150
SfaNI GCATC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 14
SsiI CCGC 1 cut(s) 32
SspMI CTAG 2 cut(s) 44, 137
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 83, 121, 258
StyI CCWWGG 2 cut(s) 203, 403
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 252
TaqI TCGA 5 cut(s) 66, 99, 357, 453, 598
TasI AATT 1 cut(s) 14
TfiI GAWTC 4 cut(s) 59, 199, 214, 577
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 2 cut(s) 164, 544
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 513
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 2 cut(s) 164, 544
Tth111I GACNNNGTC 1 cut(s) 248
XapI RAATTY 1 cut(s) 14
XspI CTAG 2 cut(s) 44, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.