AT5G51880

Prolyl 4-hydroxylase alpha subunit homologues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011173
Physical Location & Seq
Forward (+)
21089383 .. 21091073
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51880.1

Sequence Viewer

Length: 753 bp
ATGAATTTAACAAATTTAATTTCCCTGAATCTGATCTTAAATCCTCCTCAGAAACCCAGAAACGCGAAGATGGGAGACAATGGAGAATCAATAAAATGGCCAAAGATCAAACTCAAGTCGAATCTCAATGTCTCTTATCTTAAGAATCATGATCTCTTCACCGTGGAGAACTGTCTCACTTCTGATGAATCAAAGGCTTTTGTTAAAATAGCAGAGTCTCTTGGTTTTACTCATCAAGGAAGTCGTGGTCCAGCCTATGGTGAAGCTTATAGGGATAACCATCGGATCTCAGTGAACGATCCTGTCCTTGCTGATACGCTATGGCAATCAGGGCTTTCGAATTTGTTTACTGATATCAAGATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGATGGAAACCGGACCTATTACACATTGTTGATATATCTAAGCGGGAACAGCACAAAATCAAAATCCAAGAGCAGTTCAAGCAAGACGAACGATTCTTCTTCGGCTGAGCCTTTAGTAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAGGTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGGAGGAATGTCTCCAAAGGCGTCAAGTATGTGTTCCGTTCTGATGTTGTTTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_3

Protein Analysis

250

Amino Acids

27.76

Weight (kDa)

9.19

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51880
fragaria_vesca FvH4_7g28750 FvH4_7g28750
malus_domestica MD01G1193900.v1.1
prunus_persica Prupe.2G287700_v2.0.a1
pyrus_communis pycom01g20420
rosa_chinensis RchiOBHm_Chr1g0376301
rosa_laevigata RLG00000026613
rosa_multiflora Rmu_ssc0000116.1_g000061
rosa_roxburghii Rroxscaffold_4G00282220
rosa_rugosa Rorug01G0395100 Rorug01G0395200 Rorug01G0395300 Rorug01G0395300 Rorug01G0395400
rosa_samantha Rh1AG406500 Rh1BG370500 Rh1CG383300 Rh1DG400300
rosa_wichuraiana Rw1G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AccII CGCG 1 cut(s) 65
AciI CCGC 1 cut(s) 507
AclWI GGATC 2 cut(s) 293, 293
AcoI YGGCCR 1 cut(s) 98
AcsI RAATTY 3 cut(s) 4, 13, 340
AcyI GRCGYC 1 cut(s) 714
AfiI CCNNNNNNNGG 3 cut(s) 257, 581, 644
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 4 cut(s) 388, 464, 543, 609
AluBI AGCT 3 cut(s) 266, 626, 635
AluI AGCT 3 cut(s) 266, 626, 635
Alw26I GTCTC 6 cut(s) 69, 136, 179, 222, 666, 709
AlwI GGATC 2 cut(s) 293, 293
AoxI GGCC 1 cut(s) 98
ApoI RAATTY 3 cut(s) 4, 13, 340
AspS9I GGNCC 2 cut(s) 248, 477
AsuHPI GGTGA 2 cut(s) 151, 272
AsuII TTCGAA 1 cut(s) 338
AvaII GGWCC 2 cut(s) 248, 477
BalI TGGCCA 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 627
BccI CCATC 3 cut(s) 64, 288, 461
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BcoDI GTCTC 6 cut(s) 69, 136, 179, 222, 666, 709
BfrI CTTAAG 1 cut(s) 140
BlpI GCTNAGC 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 248, 477
BmgT120I GGNCC 2 cut(s) 248, 477
BpmI CTGGAG 1 cut(s) 621
Bpu10I CCTNAGC 1 cut(s) 627
Bpu1102I GCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 2 cut(s) 162, 667
BsaWI WCCGGW 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 581, 644
Bse1I ACTGG 1 cut(s) 638
Bse8I GATNNNNATC 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 162, 667
BseGI GGATG 1 cut(s) 663
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 3 cut(s) 257, 581, 644
BseMII CTCAG 4 cut(s) 62, 303, 561, 618
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 444
BsiSI CCGG 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 257, 581, 644
BsmAI GTCTC 6 cut(s) 69, 136, 179, 222, 666, 709
BsnI GGCC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 338
Bsp143I GATC 6 cut(s) 33, 105, 151, 285, 298, 457
Bsp1720I GCTNAGC 1 cut(s) 570
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 1 cut(s) 507
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 4 cut(s) 61, 302, 562, 619
BspDI ATCGAT 1 cut(s) 444
BspFNI CGCG 1 cut(s) 65
BspHI TCATGA 1 cut(s) 148
BspPI GGATC 2 cut(s) 293, 293
BspT104I TTCGAA 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 638
BssECI CCNNGG 2 cut(s) 162, 667
BssMI GATC 6 cut(s) 33, 105, 151, 285, 298, 457
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 667
Bst4CI ACNGT 4 cut(s) 163, 173, 595, 617
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 714
BstAFI CTTAAG 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 338
BstDEI CTNAG 5 cut(s) 48, 289, 503, 570, 627
BstDSI CCRYGG 2 cut(s) 162, 667
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 663
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 6 cut(s) 36, 108, 154, 288, 301, 460
BstMAI GTCTC 6 cut(s) 69, 136, 179, 222, 666, 709
BstMBI GATC 6 cut(s) 33, 105, 151, 285, 298, 457
BstMWI GCNNNNNNNGC 4 cut(s) 331, 513, 543, 632
BstNSI RCATGY 1 cut(s) 685
BstUI CGCG 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 444
BsuRI GGCC 1 cut(s) 100
BsuTUI ATCGAT 1 cut(s) 444
BtgI CCRYGG 2 cut(s) 162, 667
BtsCI GGATG 1 cut(s) 663
BtsIMutI CAGTG 2 cut(s) 297, 645
CciI TCATGA 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 248, 477
ClaI ATCGAT 1 cut(s) 444
CseI GACGC 1 cut(s) 703
CviAII CATG 4 cut(s) 149, 668, 682, 750
DdeI CTNAG 5 cut(s) 48, 289, 503, 570, 627
DpnI GATC 6 cut(s) 35, 107, 153, 287, 300, 459
DpnII GATC 6 cut(s) 33, 105, 151, 285, 298, 457
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 667
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 248, 477
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 4 cut(s) 152, 671, 685, 753
FatI CATG 4 cut(s) 148, 667, 681, 749
FauI CCCGC 1 cut(s) 500
FokI GGATG 1 cut(s) 650
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 475
HgaI GACGC 1 cut(s) 703
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 4 cut(s) 152, 671, 685, 753
HincII GTYRAC 1 cut(s) 425
HindII GTYRAC 1 cut(s) 425
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 8 cut(s) 28, 86, 121, 145, 188, 215, 388, 557
HpaII CCGG 1 cut(s) 475
HphI GGTGA 2 cut(s) 151, 272
Hpy166II GTNNAC 3 cut(s) 295, 348, 425
Hpy188I TCNGA 5 cut(s) 33, 51, 184, 285, 736
Hpy188III TCNNGA 3 cut(s) 149, 358, 461
Hpy8I GTNNAC 3 cut(s) 295, 348, 425
HpyAV CCTTC 3 cut(s) 364, 638, 686
HpyCH4III ACNGT 4 cut(s) 163, 173, 595, 617
HpyCH4V TGCA 3 cut(s) 681, 688, 749
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 513, 543, 632
HpyF3I CTNAG 5 cut(s) 48, 289, 503, 570, 627
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 4 cut(s) 152, 671, 685, 753
Kzo9I GATC 6 cut(s) 33, 105, 151, 285, 298, 457
LmnI GCTCC 1 cut(s) 640
LpnPI CCDG 9 cut(s) 38, 70, 264, 315, 315, 394, 405, 488, 651
MaeIII GTNAC 1 cut(s) 437
MalI GATC 6 cut(s) 35, 107, 153, 287, 300, 459
MboI GATC 6 cut(s) 33, 105, 151, 285, 298, 457
MboII GAAGA 5 cut(s) 79, 148, 476, 552, 555
MflI RGATCY 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 4 cut(s) 4, 13, 18, 340
MluNI TGGCCA 1 cut(s) 100
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 5 cut(s) 54, 57, 360, 622, 690
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
MseI TTAA 5 cut(s) 8, 17, 38, 141, 204
MslI CAYNNNNRTG 2 cut(s) 444, 666
Msp20I TGGCCA 1 cut(s) 100
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 1 cut(s) 475
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 331, 513, 543, 632
NcoI CCATGG 1 cut(s) 667
NdeII GATC 6 cut(s) 33, 105, 151, 285, 298, 457
NlaIII CATG 4 cut(s) 152, 671, 685, 753
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 1 cut(s) 685
NspV TTCGAA 1 cut(s) 338
PagI TCATGA 1 cut(s) 148
PfeI GAWTC 7 cut(s) 28, 86, 121, 145, 188, 388, 557
PflMI CCANNNNNTGG 1 cut(s) 257
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 248, 477
PsuI RGATCY 1 cut(s) 285
RseI CAYNNNNRTG 2 cut(s) 444, 666
SaqAI TTAA 5 cut(s) 8, 17, 38, 141, 204
Sau3AI GATC 6 cut(s) 33, 105, 151, 285, 298, 457
Sau96I GGNCC 2 cut(s) 248, 477
SchI GAGTC 1 cut(s) 224
SetI ASST 9 cut(s) 268, 375, 413, 482, 586, 628, 633, 637, 649
SfuI TTCGAA 1 cut(s) 338
SinI GGWCC 2 cut(s) 248, 477
SmiMI CAYNNNNRTG 2 cut(s) 444, 666
SmlI CTYRAG 2 cut(s) 113, 140
SmoI CTYRAG 2 cut(s) 113, 140
Sse9I AATT 4 cut(s) 4, 13, 18, 340
SsiI CCGC 1 cut(s) 507
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 4 cut(s) 163, 173, 595, 617
TaqI TCGA 3 cut(s) 119, 338, 444
TasI AATT 4 cut(s) 4, 13, 18, 340
TfiI GAWTC 7 cut(s) 28, 86, 121, 145, 188, 388, 557
Tru1I TTAA 5 cut(s) 8, 17, 38, 141, 204
Tru9I TTAA 5 cut(s) 8, 17, 38, 141, 204
TscAI CASTG 2 cut(s) 297, 645
TseFI GTSAC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 17, 201, 462
TspGWI ACGGA 1 cut(s) 719
TspRI CASTG 2 cut(s) 297, 645
Van91I CCANNNNNTGG 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 248, 477
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 3 cut(s) 4, 13, 340
XceI RCATGY 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.