RLG00000026613

Prolyl 4-hydroxylase alpha subunit homologues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011173
Physical Location & Seq
Reverse (-)
4236234 .. 4237370
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026613

Sequence Viewer

Length: 741 bp
ATGGCTGAAACAGAAACAAGGAAAAGGAAGAGGAAGATGGGAGAGAGAAGAGAAGCTGATTCCAGTTCCACCAGGACAACAACACCGAAGTGGCCAACAATCAAACCAAAACAAAACATTCAGATAACCCGTCTCAAAGACAATGATCTTTTCACCGTACATAATTTCTTTACATCTGCAGAATCAAAGGCTTTTGTTAAGGTTGCAGAGTCTATTGGGTTTGTTCACCAAGGAAGTCTTGGCCCAACAAAAGGTGAAGCTTTTAGAGACAATGATAGAATCTCTGTGAACGATCCTGTTCTTGCTGATTCTATATGGAATTCTGGGCTCAGCAAATTGTTTTCTGACATCAAAATTCGAAGGGAGGTTGCTGTTGGCTTAAACCCAAATATCAGATTCTACAGGTATAAGGTTGGTCAGCGATTTGGGAGGCATATTGATGAAAGTGTTGATCTTGAAGATGGAAAACGCACACATTATACTTTGTTGATATATTTGAGTGGCGGTTTCAGACCGAAAGCAAAAAATGATGTGAGCAGTTATCAGGATTCATCCTCAGAGCCTCTGGTTGGAGGAGAGACCGTCTTTTATGGCTCAAGGAATAGTGTTGTGGCTGAGGTGGCTCCCGTTGAAGGGATGGCTCTTCTGCACATTCATGGGCACAAATGTATGCTGCATGAAGCTCGAAATGTTACTAAGGGTATCAAGTATGTGTTTCGTTCAGATGTTGTATTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_3

Protein Analysis

247

Amino Acids

27.75

Weight (kDa)

9.66

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51880
fragaria_vesca FvH4_7g28750 FvH4_7g28750
malus_domestica MD01G1193900.v1.1
prunus_persica Prupe.2G287700_v2.0.a1
pyrus_communis pycom01g20420
rosa_chinensis RchiOBHm_Chr1g0376301
rosa_laevigata RLG00000026613
rosa_multiflora Rmu_ssc0000116.1_g000061
rosa_roxburghii Rroxscaffold_4G00282220
rosa_rugosa Rorug01G0395100 Rorug01G0395200 Rorug01G0395300 Rorug01G0395300 Rorug01G0395400
rosa_samantha Rh1AG406500 Rh1BG370500 Rh1CG383300 Rh1DG400300
rosa_wichuraiana Rw1G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 504
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 2 cut(s) 319, 354
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 4 cut(s) 251, 569, 632, 633
AgsI TTSAA 2 cut(s) 458, 632
AjnI CCWGG 1 cut(s) 71
AleI CACNNNNGTG 1 cut(s) 88
AluBI AGCT 3 cut(s) 56, 260, 683
AluI AGCT 3 cut(s) 56, 260, 683
Alw26I GTCTC 3 cut(s) 137, 261, 572
AlwI GGATC 1 cut(s) 287
AoxI GGCC 2 cut(s) 92, 241
ApeKI GCWGC 1 cut(s) 673
ApoI RAATTY 2 cut(s) 319, 354
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 145, 218, 266
AsuII TTCGAA 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 663
BalI TGGCCA 1 cut(s) 94
BanII GRGCYC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 660
BccI CCATC 3 cut(s) 31, 455, 631
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 3 cut(s) 137, 261, 572
BfmI CTRYAG 2 cut(s) 177, 400
BisI GCNGC 1 cut(s) 674
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 675
Bme1390I CCNGG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 1 cut(s) 73
Bpu10I CCTNAGC 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 569, 632, 633
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 551, 642
BseLI CCNNNNNNNGG 4 cut(s) 251, 569, 632, 633
BseMII CTCAG 3 cut(s) 343, 570, 606
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 1 cut(s) 660
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 2 cut(s) 94, 243
BslI CCNNNNNNNGG 4 cut(s) 251, 569, 632, 633
BsmAI GTCTC 3 cut(s) 137, 261, 572
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 94, 243
Bso31I GGTCTC 1 cut(s) 572
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 330, 663
Bsp143I GATC 3 cut(s) 145, 292, 451
Bsp1720I GCTNAGC 1 cut(s) 329
BspACI CCGC 1 cut(s) 504
BspANI GGCC 2 cut(s) 94, 243
BspCNI CTCAG 3 cut(s) 342, 569, 607
BspLI GGNNCC 1 cut(s) 624
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 1 cut(s) 287
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 572
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 145, 292, 451
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 157, 583
Bst6I CTCTTC 3 cut(s) 23, 43, 648
BstBI TTCGAA 1 cut(s) 358
BstDEI CTNAG 4 cut(s) 329, 556, 615, 696
BstF5I GGATG 2 cut(s) 551, 642
BstKTI GATC 3 cut(s) 148, 295, 454
BstMAI GTCTC 3 cut(s) 137, 261, 572
BstMBI GATC 3 cut(s) 145, 292, 451
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 2 cut(s) 177, 400
BstSLI GKGCMC 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 94, 243
BtsCI GGATG 2 cut(s) 551, 642
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 158
CviAII CATG 3 cut(s) 656, 677, 738
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 4 cut(s) 329, 556, 615, 696
DpnI GATC 3 cut(s) 147, 294, 453
DpnII GATC 3 cut(s) 145, 292, 451
EaeI YGGCCR 1 cut(s) 92
Eam1104I CTCTTC 3 cut(s) 23, 43, 648
EarI CTCTTC 3 cut(s) 23, 43, 648
Eco130I CCWWGG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 572
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 3 cut(s) 659, 680, 741
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 3 cut(s) 655, 676, 737
Fnu4HI GCNGC 1 cut(s) 674
FokI GGATG 2 cut(s) 538, 649
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 674
GluI GCNGC 1 cut(s) 674
HaeIII GGCC 2 cut(s) 94, 243
Hin1II CATG 3 cut(s) 659, 680, 741
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 7 cut(s) 59, 182, 209, 279, 308, 396, 548
HphI GGTGA 3 cut(s) 145, 218, 266
Hpy166II GTNNAC 2 cut(s) 226, 289
Hpy188I TCNGA 6 cut(s) 123, 346, 395, 512, 559, 724
Hpy188III TCNNGA 2 cut(s) 455, 545
Hpy8I GTNNAC 2 cut(s) 226, 289
HpyAV CCTTC 2 cut(s) 354, 626
HpyCH4III ACNGT 2 cut(s) 157, 583
HpyCH4V TGCA 5 cut(s) 179, 206, 649, 676, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 4 cut(s) 329, 556, 615, 696
Hsp92II CATG 3 cut(s) 659, 680, 741
Kzo9I GATC 3 cut(s) 145, 292, 451
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 8 cut(s) 58, 76, 85, 309, 309, 388, 530, 551
Lsp1109I GCAGC 1 cut(s) 660
MaeIII GTNAC 1 cut(s) 691
MalI GATC 3 cut(s) 147, 294, 453
MboI GATC 3 cut(s) 145, 292, 451
MboII GAAGA 5 cut(s) 40, 46, 60, 470, 635
MhlI GDGCHC 2 cut(s) 330, 663
MlsI TGGCCA 1 cut(s) 94
MluCI AATT 4 cut(s) 163, 319, 335, 354
MluNI TGGCCA 1 cut(s) 94
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 7 cut(s) 24, 358, 423, 565, 566, 573, 610
Mox20I TGGCCA 1 cut(s) 94
MscI TGGCCA 1 cut(s) 94
MseI TTAA 2 cut(s) 198, 380
MslI CAYNNNNRTG 3 cut(s) 88, 438, 654
Msp20I TGGCCA 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 620
NdeII GATC 3 cut(s) 145, 292, 451
NlaIII CATG 3 cut(s) 659, 680, 741
NlaIV GGNNCC 1 cut(s) 624
NspV TTCGAA 1 cut(s) 358
OliI CACNNNNGTG 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 648
PfeI GAWTC 6 cut(s) 59, 182, 279, 308, 396, 548
PkrI GCNGC 1 cut(s) 675
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 3 cut(s) 88, 438, 654
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 2 cut(s) 198, 380
SatI GCNGC 1 cut(s) 674
Sau3AI GATC 3 cut(s) 145, 292, 451
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 2 cut(s) 330, 663
SetI ASST 9 cut(s) 58, 204, 256, 262, 369, 407, 414, 621, 685
SfcI CTRYAG 2 cut(s) 177, 400
SfuI TTCGAA 1 cut(s) 358
SmiMI CAYNNNNRTG 3 cut(s) 88, 438, 654
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 4 cut(s) 163, 319, 335, 354
SsiI CCGC 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 157, 583
TaqI TCGA 2 cut(s) 358, 685
TaqII GACCGA 1 cut(s) 529
TasI AATT 4 cut(s) 163, 319, 335, 354
TfiI GAWTC 6 cut(s) 59, 182, 279, 308, 396, 548
Tru1I TTAA 2 cut(s) 198, 380
Tru9I TTAA 2 cut(s) 198, 380
TseI GCWGC 1 cut(s) 673
TspDTI ATGAA 4 cut(s) 456, 540, 644, 693
XapI RAATTY 2 cut(s) 319, 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.