Rorug01G0395400

Prolyl 4-hydroxylase alpha subunit homologues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011173
Physical Location & Seq
Reverse (-)
50517442 .. 50518301
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0395400.1

Sequence Viewer

Length: 300 bp
ATGCCGACTAAGCCCTTTAGGGTTTCTTCCTTCAATATAAATGGTCGCAACGCTCCCTCATCCCGACCCTCCCAAAGCCGCTATCACTTCCTTTCCTTCTGCGCAGCCTTCTCTCCACAACTAGGGTTTTGGAAGCGAATCTCATTTCAGCGACGCCATGAGGGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTAGTTGCCTTCATCGATCGACGTTCAGCTCGCCGGAATTTCCTTGTTTTCGTGTTTCTAATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_3

Protein Analysis

99

Amino Acids

11.67

Weight (kDa)

8.97

Isoelectric Point (pI)

92.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51880
fragaria_vesca FvH4_7g28750 FvH4_7g28750
malus_domestica MD01G1193900.v1.1
prunus_persica Prupe.2G287700_v2.0.a1
pyrus_communis pycom01g20420
rosa_chinensis RchiOBHm_Chr1g0376301
rosa_laevigata RLG00000026613
rosa_multiflora Rmu_ssc0000116.1_g000061
rosa_roxburghii Rroxscaffold_4G00282220
rosa_rugosa Rorug01G0395100 Rorug01G0395200 Rorug01G0395300 Rorug01G0395300 Rorug01G0395400
rosa_samantha Rh1AG406500 Rh1BG370500 Rh1CG383300 Rh1DG400300
rosa_wichuraiana Rw1G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 268
AcyI GRCGYC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 34, 197
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 220
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 268
AspLEI GCGC 2 cut(s) 104, 208
AspS9I GGNCC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 2 cut(s) 79, 105
BlsI GCNGC 2 cut(s) 80, 106
BmgT120I GGNCC 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseCI ATCGAT 1 cut(s) 246
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 225, 247
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 165
BspDI ATCGAT 1 cut(s) 246
BspPI GGATC 1 cut(s) 220
BssMI GATC 2 cut(s) 225, 247
BssNI GRCGYC 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 2 cut(s) 104, 208
BstKTI GATC 2 cut(s) 228, 250
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 225, 247
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 10, 162
BstV1I GCAGC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 246
BtsCI GGATG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 2 cut(s) 104, 208
Cfr13I GGNCC 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 1 cut(s) 162
CviAII CATG 1 cut(s) 158
CviJI RGCY 5 cut(s) 13, 78, 107, 165, 260
CviKI_1 RGCY 5 cut(s) 13, 78, 107, 165, 260
DdeI CTNAG 1 cut(s) 9
DpnI GATC 2 cut(s) 227, 249
DpnII GATC 2 cut(s) 225, 247
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
FaeI CATG 1 cut(s) 161
FaiI YATR 3 cut(s) 38, 159, 186
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 79, 105
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 79, 105
FspBI CTAG 1 cut(s) 122
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 2 cut(s) 103, 207
GluI GCNGC 2 cut(s) 79, 105
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 162
HhaI GCGC 2 cut(s) 104, 208
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 2 cut(s) 102, 206
HinP1I GCGC 2 cut(s) 102, 206
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 63
Hpy99I CGWCG 2 cut(s) 156, 255
HpyAV CCTTC 4 cut(s) 40, 106, 118, 250
HpyCH4IV ACGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 162
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 2 cut(s) 102, 206
Kzo9I GATC 2 cut(s) 225, 247
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 116
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 253
MalI GATC 2 cut(s) 227, 249
MboI GATC 2 cut(s) 225, 247
MboII GAAGA 4 cut(s) 18, 185, 188, 209
MflI RGATCY 1 cut(s) 225
MluCI AATT 1 cut(s) 268
MnlI CCTC 6 cut(s) 67, 79, 154, 181, 184, 193
MspI CCGG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 10, 162
NdeII GATC 2 cut(s) 225, 247
NlaIII CATG 1 cut(s) 161
NsbI TGCGCA 1 cut(s) 103
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 2 cut(s) 80, 106
Ple19I CGATCG 1 cut(s) 250
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 225
PvuI CGATCG 1 cut(s) 250
SatI GCNGC 2 cut(s) 79, 105
Sau3AI GATC 2 cut(s) 225, 247
Sau96I GGNCC 1 cut(s) 163
SetI ASST 3 cut(s) 195, 256, 262
SgeI CNNG 9 cut(s) 75, 134, 170, 179, 242, 273, 277, 287, 295
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 122
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 246, 250
TasI AATT 1 cut(s) 268
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 138
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 232
XapI RAATTY 1 cut(s) 268
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.