Rh1BG370500

Prolyl 4-hydroxylase alpha subunit homologues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011173
Physical Location & Seq
Forward (+)
50101958 .. 50103788
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG370500.1

Sequence Viewer

Length: 738 bp
ATGGCTGAAACAGAAACAAGGAAGAGGAAGATGGGAGAGAGAAGAGAAGCTGATTCCAATTCCAGGACAGCAACACCAAAGTGGCCAACAATCAAACCAAAACAAAACATTCAGATAACCCGTCTCAAAGACAATGATCTTTTCACCGTACATAATTTCTTCACATCTGCAGAATCAAAGGCTTTTGTTAAGGTTGCAGACAGGGAGTCTATTGGGTTTGTTCACCAAGGAAGTCTTGGCCCAACAAAAGGTGAAGCTTTTAGAGACAATGATAGAATCTCTGTGAACGATCCTGTTCTTGCTGATTCTATATGGAATTCTGGGCTCAGCAAATTGTTTTCTGACATCAAAATTCGAAGGGAGGTTGCTGTTGGCTTAAACCCAAATATCAGATTCTACAGGTACAAGGTTGGTCAGCGATTTGGGAGGCATATTGATGAAAGTGTTGATCTTGAAGATGGAAAACGCACACATTATACTTTGTTGATATATTTGAGTGGCGGTTTCAAACCGAAAGCGAAAAATGATGTGAGCAGTCATCAGGATTCATCCTCAGACCCTCCGGTTGGAGGAGAGACCGTCTTTTATGGCTCAAGGAATAGTGTTGTGGCTGAGGTGGCTCCCGTTGAAGGGATGGCTCTTCTGCACATTCATGGGCACAAATGTATGCTGCATGAAGCTCGAAATGTTACTAAGGGTATCAAGTATGTGTTTCGTTCAGATGTTGTATTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_3

Protein Analysis

245

Amino Acids

27.55

Weight (kDa)

9.52

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51880
fragaria_vesca FvH4_7g28750 FvH4_7g28750
malus_domestica MD01G1193900.v1.1
prunus_persica Prupe.2G287700_v2.0.a1
pyrus_communis pycom01g20420
rosa_chinensis RchiOBHm_Chr1g0376301
rosa_laevigata RLG00000026613
rosa_multiflora Rmu_ssc0000116.1_g000061
rosa_roxburghii Rroxscaffold_4G00282220
rosa_rugosa Rorug01G0395100 Rorug01G0395200 Rorug01G0395300 Rorug01G0395300 Rorug01G0395400
rosa_samantha Rh1AG406500 Rh1BG370500 Rh1CG383300 Rh1DG400300
rosa_wichuraiana Rw1G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 501
AclWI GGATC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 2 cut(s) 316, 351
AfaI GTAC 2 cut(s) 150, 404
AfiI CCNNNNNNNGG 6 cut(s) 63, 248, 566, 569, 629, 630
AgsI TTSAA 3 cut(s) 455, 508, 629
AhdI GACNNNNNGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 62
AleI CACNNNNGTG 1 cut(s) 79
AluBI AGCT 3 cut(s) 50, 257, 680
AluI AGCT 3 cut(s) 50, 257, 680
Alw26I GTCTC 3 cut(s) 128, 258, 569
AlwI GGATC 1 cut(s) 284
AoxI GGCC 2 cut(s) 83, 238
ApeKI GCWGC 1 cut(s) 670
ApoI RAATTY 2 cut(s) 316, 351
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 136, 215, 263
AsuII TTCGAA 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 660
BalI TGGCCA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 657
BccI CCATC 3 cut(s) 25, 452, 628
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 128, 258, 569
BfmI CTRYAG 2 cut(s) 168, 397
BisI GCNGC 1 cut(s) 671
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 672
Bme1390I CCNGG 1 cut(s) 64
BmeRI GACNNNNNGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 248, 566, 569, 629, 630
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 2 cut(s) 548, 639
BseLI CCNNNNNNNGG 6 cut(s) 63, 248, 566, 569, 629, 630
BseMII CTCAG 3 cut(s) 340, 567, 603
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 1 cut(s) 657
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 2 cut(s) 85, 240
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 6 cut(s) 63, 248, 566, 569, 629, 630
BsmAI GTCTC 3 cut(s) 128, 258, 569
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 85, 240
Bso31I GGTCTC 1 cut(s) 569
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 327, 660
Bsp143I GATC 3 cut(s) 136, 289, 448
Bsp1720I GCTNAGC 1 cut(s) 326
BspACI CCGC 1 cut(s) 501
BspANI GGCC 2 cut(s) 85, 240
BspCNI CTCAG 3 cut(s) 339, 566, 604
BspLI GGNNCC 1 cut(s) 621
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 645
BspT104I TTCGAA 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 3 cut(s) 136, 289, 448
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 148, 580
Bst6I CTCTTC 3 cut(s) 17, 37, 645
BstBI TTCGAA 1 cut(s) 355
BstDEI CTNAG 4 cut(s) 326, 553, 612, 693
BstF5I GGATG 2 cut(s) 548, 639
BstKTI GATC 3 cut(s) 139, 292, 451
BstMAI GTCTC 3 cut(s) 128, 258, 569
BstMBI GATC 3 cut(s) 136, 289, 448
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 2 cut(s) 168, 397
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 1 cut(s) 657
BsuRI GGCC 2 cut(s) 85, 240
BtsCI GGATG 2 cut(s) 548, 639
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 149, 403
CviAII CATG 3 cut(s) 653, 674, 735
CviQI GTAC 2 cut(s) 149, 403
DdeI CTNAG 4 cut(s) 326, 553, 612, 693
DpnI GATC 3 cut(s) 138, 291, 450
DpnII GATC 3 cut(s) 136, 289, 448
DriI GACNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 3 cut(s) 17, 37, 645
Eam1105I GACNNNNNGTC 1 cut(s) 205
EarI CTCTTC 3 cut(s) 17, 37, 645
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 656, 677, 738
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 3 cut(s) 652, 673, 734
Fnu4HI GCNGC 1 cut(s) 671
FokI GGATG 2 cut(s) 535, 646
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 671
GluI GCNGC 1 cut(s) 671
HaeIII GGCC 2 cut(s) 85, 240
HapII CCGG 1 cut(s) 563
Hin1II CATG 3 cut(s) 656, 677, 738
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 7 cut(s) 53, 173, 206, 276, 305, 393, 545
HpaII CCGG 1 cut(s) 563
HphI GGTGA 3 cut(s) 136, 215, 263
Hpy166II GTNNAC 2 cut(s) 223, 286
Hpy188I TCNGA 5 cut(s) 114, 343, 392, 556, 721
Hpy188III TCNNGA 2 cut(s) 452, 542
Hpy8I GTNNAC 2 cut(s) 223, 286
HpyAV CCTTC 2 cut(s) 351, 623
HpyCH4III ACNGT 2 cut(s) 148, 580
HpyCH4V TGCA 5 cut(s) 170, 197, 646, 673, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 4 cut(s) 326, 553, 612, 693
Hsp92II CATG 3 cut(s) 656, 677, 738
Kzo9I GATC 3 cut(s) 136, 289, 448
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 1 cut(s) 625
LpnPI CCDG 8 cut(s) 49, 76, 187, 306, 306, 385, 527, 576
Lsp1109I GCAGC 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 688
MalI GATC 3 cut(s) 138, 291, 450
MboI GATC 3 cut(s) 136, 289, 448
MboII GAAGA 6 cut(s) 34, 40, 54, 151, 467, 632
MhlI GDGCHC 2 cut(s) 327, 660
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 5 cut(s) 58, 154, 316, 332, 351
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 7 cut(s) 18, 355, 420, 562, 563, 570, 607
Mox20I TGGCCA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 189, 377
MslI CAYNNNNRTG 3 cut(s) 79, 435, 651
Msp20I TGGCCA 1 cut(s) 85
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 617
NdeII GATC 3 cut(s) 136, 289, 448
NlaIII CATG 3 cut(s) 656, 677, 738
NlaIV GGNNCC 1 cut(s) 621
NspV TTCGAA 1 cut(s) 355
OliI CACNNNNGTG 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 645
PfeI GAWTC 6 cut(s) 53, 173, 276, 305, 393, 545
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 1 cut(s) 672
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 239
PstI CTGCAG 1 cut(s) 172
RsaI GTAC 2 cut(s) 150, 404
RsaNI GTAC 2 cut(s) 149, 403
RseI CAYNNNNRTG 3 cut(s) 79, 435, 651
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 2 cut(s) 189, 377
SatI GCNGC 1 cut(s) 671
Sau3AI GATC 3 cut(s) 136, 289, 448
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 327, 660
SetI ASST 9 cut(s) 52, 195, 253, 259, 366, 404, 411, 618, 682
SfcI CTRYAG 2 cut(s) 168, 397
SfuI TTCGAA 1 cut(s) 355
SmiMI CAYNNNNRTG 3 cut(s) 79, 435, 651
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 5 cut(s) 58, 154, 316, 332, 351
SsiI CCGC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 148, 580
TaqI TCGA 2 cut(s) 355, 682
TasI AATT 5 cut(s) 58, 154, 316, 332, 351
TfiI GAWTC 6 cut(s) 53, 173, 276, 305, 393, 545
Tru1I TTAA 2 cut(s) 189, 377
Tru9I TTAA 2 cut(s) 189, 377
TseI GCWGC 1 cut(s) 670
TspDTI ATGAA 4 cut(s) 453, 537, 641, 690
XapI RAATTY 2 cut(s) 316, 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.