Prolyl 4-hydroxylase alpha subunit homologues.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51880 |
| fragaria_vesca | FvH4_7g28750 FvH4_7g28750 |
| malus_domestica | MD01G1193900.v1.1 |
| prunus_persica | Prupe.2G287700_v2.0.a1 |
| pyrus_communis | pycom01g20420 |
| rosa_chinensis | RchiOBHm_Chr1g0376301 |
| rosa_laevigata | RLG00000026613 |
| rosa_multiflora | Rmu_ssc0000116.1_g000061 |
| rosa_roxburghii | Rroxscaffold_4G00282220 |
| rosa_rugosa | Rorug01G0395100 Rorug01G0395200 Rorug01G0395300 Rorug01G0395300 Rorug01G0395400 |
| rosa_samantha | Rh1AG406500 Rh1BG370500 Rh1CG383300 Rh1DG400300 |
| rosa_wichuraiana | Rw1G036080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 498 |
| AclWI | GGATC | 1 cut(s) | 281 |
| AcoI | YGGCCR | 1 cut(s) | 86 |
| AcsI | RAATTY | 1 cut(s) | 313 |
| AfaI | GTAC | 1 cut(s) | 401 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 245, 563, 626, 627 |
| AgsI | TTSAA | 3 cut(s) | 452, 505, 626 |
| AjnI | CCWGG | 1 cut(s) | 65 |
| AleI | CACNNNNGTG | 1 cut(s) | 82 |
| AluBI | AGCT | 3 cut(s) | 50, 254, 677 |
| AluI | AGCT | 3 cut(s) | 50, 254, 677 |
| Alw26I | GTCTC | 3 cut(s) | 131, 255, 566 |
| AlwI | GGATC | 1 cut(s) | 281 |
| AoxI | GGCC | 2 cut(s) | 86, 235 |
| ApeKI | GCWGC | 1 cut(s) | 667 |
| ApoI | RAATTY | 1 cut(s) | 313 |
| AspS9I | GGNCC | 1 cut(s) | 236 |
| AsuHPI | GGTGA | 3 cut(s) | 139, 212, 260 |
| AsuII | TTCGAA | 1 cut(s) | 352 |
| BaeGI | GKGCMC | 1 cut(s) | 657 |
| BalI | TGGCCA | 1 cut(s) | 88 |
| BanII | GRGCYC | 1 cut(s) | 324 |
| BbvCI | CCTCAGC | 1 cut(s) | 609 |
| BbvI | GCAGC | 1 cut(s) | 654 |
| BccI | CCATC | 3 cut(s) | 25, 449, 625 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 659, 693 |
| BciT130I | CCWGG | 1 cut(s) | 67 |
| BcoDI | GTCTC | 3 cut(s) | 131, 255, 566 |
| BfmI | CTRYAG | 2 cut(s) | 171, 394 |
| BisI | GCNGC | 1 cut(s) | 668 |
| BlpI | GCTNAGC | 1 cut(s) | 323 |
| BlsI | GCNGC | 1 cut(s) | 669 |
| Bme1390I | CCNGG | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 236 |
| BmiI | GGNNCC | 1 cut(s) | 618 |
| BmrFI | CCNGG | 1 cut(s) | 67 |
| Bpu10I | CCTNAGC | 1 cut(s) | 609 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 323 |
| Bpu14I | TTCGAA | 1 cut(s) | 352 |
| BpuEI | CTTGAG | 1 cut(s) | 574 |
| BsaI | GGTCTC | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 1 cut(s) | 223 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 561, 591 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 245, 563, 626, 627 |
| Bse1I | ACTGG | 1 cut(s) | 57 |
| BseBI | CCWGG | 1 cut(s) | 67 |
| BseDI | CCNNGG | 1 cut(s) | 223 |
| BseGI | GGATG | 2 cut(s) | 545, 636 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 245, 563, 626, 627 |
| BseMII | CTCAG | 3 cut(s) | 337, 564, 600 |
| BseNI | ACTGG | 1 cut(s) | 57 |
| BseRI | GAGGAG | 1 cut(s) | 582 |
| BseSI | GKGCMC | 1 cut(s) | 657 |
| BseXI | GCAGC | 1 cut(s) | 654 |
| BsgI | GTGCAG | 1 cut(s) | 626 |
| BshFI | GGCC | 2 cut(s) | 88, 237 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 245, 563, 626, 627 |
| BsmAI | GTCTC | 3 cut(s) | 131, 255, 566 |
| BsmBI | CGTCTC | 1 cut(s) | 131 |
| BsnI | GGCC | 2 cut(s) | 88, 237 |
| Bso31I | GGTCTC | 1 cut(s) | 566 |
| Bsp119I | TTCGAA | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 2 cut(s) | 324, 657 |
| Bsp143I | GATC | 3 cut(s) | 139, 286, 445 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 323 |
| BspACI | CCGC | 1 cut(s) | 498 |
| BspANI | GGCC | 2 cut(s) | 88, 237 |
| BspCNI | CTCAG | 3 cut(s) | 336, 563, 601 |
| BspLI | GGNNCC | 1 cut(s) | 618 |
| BspMAI | CTGCAG | 1 cut(s) | 175 |
| BspPI | GGATC | 1 cut(s) | 281 |
| BspQI | GCTCTTC | 1 cut(s) | 642 |
| BspT104I | TTCGAA | 1 cut(s) | 352 |
| BspTNI | GGTCTC | 1 cut(s) | 566 |
| BsrI | ACTGG | 1 cut(s) | 57 |
| BssECI | CCNNGG | 1 cut(s) | 223 |
| BssMI | GATC | 3 cut(s) | 139, 286, 445 |
| BssT1I | CCWWGG | 1 cut(s) | 223 |
| Bst2UI | CCWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 1 cut(s) | 577 |
| Bst6I | CTCTTC | 3 cut(s) | 17, 37, 642 |
| BstBI | TTCGAA | 1 cut(s) | 352 |
| BstDEI | CTNAG | 4 cut(s) | 323, 550, 609, 690 |
| BstF5I | GGATG | 2 cut(s) | 545, 636 |
| BstKTI | GATC | 3 cut(s) | 142, 289, 448 |
| BstMAI | GTCTC | 3 cut(s) | 131, 255, 566 |
| BstMBI | GATC | 3 cut(s) | 139, 286, 445 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 614 |
| BstNI | CCWGG | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 65 |
| BstSFI | CTRYAG | 2 cut(s) | 171, 394 |
| BstSLI | GKGCMC | 1 cut(s) | 657 |
| BstV1I | GCAGC | 1 cut(s) | 654 |
| BsuRI | GGCC | 2 cut(s) | 88, 237 |
| BtsCI | GGATG | 2 cut(s) | 545, 636 |
| Cfr13I | GGNCC | 1 cut(s) | 236 |
| Csp6I | GTAC | 1 cut(s) | 400 |
| CviAII | CATG | 3 cut(s) | 650, 671, 732 |
| CviQI | GTAC | 1 cut(s) | 400 |
| DdeI | CTNAG | 4 cut(s) | 323, 550, 609, 690 |
| DpnI | GATC | 3 cut(s) | 141, 288, 447 |
| DpnII | GATC | 3 cut(s) | 139, 286, 445 |
| EaeI | YGGCCR | 1 cut(s) | 86 |
| Eam1104I | CTCTTC | 3 cut(s) | 17, 37, 642 |
| EarI | CTCTTC | 3 cut(s) | 17, 37, 642 |
| Eco130I | CCWWGG | 1 cut(s) | 223 |
| Eco24I | GRGCYC | 1 cut(s) | 324 |
| Eco31I | GGTCTC | 1 cut(s) | 566 |
| EcoRI | GAATTC | 1 cut(s) | 313 |
| EcoRII | CCWGG | 1 cut(s) | 65 |
| EcoT14I | CCWWGG | 1 cut(s) | 223 |
| EcoT38I | GRGCYC | 1 cut(s) | 324 |
| ErhI | CCWWGG | 1 cut(s) | 223 |
| Esp3I | CGTCTC | 1 cut(s) | 131 |
| FaeI | CATG | 3 cut(s) | 653, 674, 735 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 216, 248 |
| FatI | CATG | 3 cut(s) | 649, 670, 731 |
| Fnu4HI | GCNGC | 1 cut(s) | 668 |
| FokI | GGATG | 2 cut(s) | 532, 643 |
| FriOI | GRGCYC | 1 cut(s) | 324 |
| Fsp4HI | GCNGC | 1 cut(s) | 668 |
| GluI | GCNGC | 1 cut(s) | 668 |
| HaeIII | GGCC | 2 cut(s) | 88, 237 |
| Hin1II | CATG | 3 cut(s) | 653, 674, 735 |
| HindIII | AAGCTT | 1 cut(s) | 252 |
| HinfI | GANTC | 8 cut(s) | 53, 176, 203, 273, 302, 349, 390, 542 |
| HphI | GGTGA | 3 cut(s) | 139, 212, 260 |
| Hpy166II | GTNNAC | 1 cut(s) | 220 |
| Hpy188I | TCNGA | 5 cut(s) | 117, 340, 389, 553, 718 |
| Hpy188III | TCNNGA | 3 cut(s) | 346, 449, 539 |
| Hpy8I | GTNNAC | 1 cut(s) | 220 |
| HpyAV | CCTTC | 2 cut(s) | 348, 620 |
| HpyCH4III | ACNGT | 1 cut(s) | 577 |
| HpyCH4V | TGCA | 5 cut(s) | 173, 200, 643, 670, 731 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 614 |
| HpyF3I | CTNAG | 4 cut(s) | 323, 550, 609, 690 |
| Hsp92II | CATG | 3 cut(s) | 653, 674, 735 |
| Kzo9I | GATC | 3 cut(s) | 139, 286, 445 |
| LguI | GCTCTTC | 1 cut(s) | 642 |
| LmnI | GCTCC | 1 cut(s) | 622 |
| LpnPI | CCDG | 8 cut(s) | 52, 70, 79, 303, 303, 382, 524, 545 |
| Lsp1109I | GCAGC | 1 cut(s) | 654 |
| MaeIII | GTNAC | 1 cut(s) | 685 |
| MalI | GATC | 3 cut(s) | 141, 288, 447 |
| MboI | GATC | 3 cut(s) | 139, 286, 445 |
| MboII | GAAGA | 5 cut(s) | 34, 40, 54, 464, 629 |
| MhlI | GDGCHC | 2 cut(s) | 324, 657 |
| MlsI | TGGCCA | 1 cut(s) | 88 |
| MluCI | AATT | 3 cut(s) | 157, 313, 329 |
| MluNI | TGGCCA | 1 cut(s) | 88 |
| MlyI | GAGTC | 1 cut(s) | 212 |
| MmeI | TCCRAC | 1 cut(s) | 544 |
| MnlI | CCTC | 8 cut(s) | 12, 18, 352, 417, 559, 560, 567, 604 |
| Mox20I | TGGCCA | 1 cut(s) | 88 |
| MscI | TGGCCA | 1 cut(s) | 88 |
| MseI | TTAA | 2 cut(s) | 192, 374 |
| MslI | CAYNNNNRTG | 3 cut(s) | 82, 432, 648 |
| Msp20I | TGGCCA | 1 cut(s) | 88 |
| MspR9I | CCNGG | 1 cut(s) | 67 |
| MvaI | CCWGG | 1 cut(s) | 67 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 614 |
| NdeII | GATC | 3 cut(s) | 139, 286, 445 |
| NlaIII | CATG | 3 cut(s) | 653, 674, 735 |
| NlaIV | GGNNCC | 1 cut(s) | 618 |
| NspV | TTCGAA | 1 cut(s) | 352 |
| OliI | CACNNNNGTG | 1 cut(s) | 82 |
| PciSI | GCTCTTC | 1 cut(s) | 642 |
| PfeI | GAWTC | 7 cut(s) | 53, 176, 273, 302, 349, 390, 542 |
| PkrI | GCNGC | 1 cut(s) | 669 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| Psp6I | CCWGG | 1 cut(s) | 65 |
| PspGI | CCWGG | 1 cut(s) | 65 |
| PspN4I | GGNNCC | 1 cut(s) | 618 |
| PspPI | GGNCC | 1 cut(s) | 236 |
| PstI | CTGCAG | 1 cut(s) | 175 |
| RsaI | GTAC | 1 cut(s) | 401 |
| RsaNI | GTAC | 1 cut(s) | 400 |
| RseI | CAYNNNNRTG | 3 cut(s) | 82, 432, 648 |
| SapI | GCTCTTC | 1 cut(s) | 642 |
| SaqAI | TTAA | 2 cut(s) | 192, 374 |
| SatI | GCNGC | 1 cut(s) | 668 |
| Sau3AI | GATC | 3 cut(s) | 139, 286, 445 |
| Sau96I | GGNCC | 1 cut(s) | 236 |
| SchI | GAGTC | 1 cut(s) | 212 |
| ScrFI | CCNGG | 1 cut(s) | 67 |
| SduI | GDGCHC | 2 cut(s) | 324, 657 |
| SetI | ASST | 9 cut(s) | 52, 198, 250, 256, 363, 401, 408, 615, 679 |
| SfcI | CTRYAG | 2 cut(s) | 171, 394 |
| SfuI | TTCGAA | 1 cut(s) | 352 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 82, 432, 648 |
| SmlI | CTYRAG | 1 cut(s) | 589 |
| SmoI | CTYRAG | 1 cut(s) | 589 |
| Sse9I | AATT | 3 cut(s) | 157, 313, 329 |
| SsiI | CCGC | 1 cut(s) | 498 |
| StyD4I | CCNGG | 1 cut(s) | 65 |
| StyI | CCWWGG | 1 cut(s) | 223 |
| TaaI | ACNGT | 1 cut(s) | 577 |
| TaqI | TCGA | 2 cut(s) | 352, 679 |
| TasI | AATT | 3 cut(s) | 157, 313, 329 |
| TfiI | GAWTC | 7 cut(s) | 53, 176, 273, 302, 349, 390, 542 |
| Tru1I | TTAA | 2 cut(s) | 192, 374 |
| Tru9I | TTAA | 2 cut(s) | 192, 374 |
| TseI | GCWGC | 1 cut(s) | 667 |
| TspDTI | ATGAA | 4 cut(s) | 450, 534, 638, 687 |
| XapI | RAATTY | 1 cut(s) | 313 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 230 |