Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011968

Physical Location & Seq

Genomic Coordinates Reverse (-)

21121405 .. 21123133

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAGTTTGTTCTGTAATTCAATCGAAACCCTTTATCCAAAACCATTCCTTTCACACAAATCTCACTTCTTTACCTTCTCCAATTCCAAATTCCAAAACCCTAAATTCACAAGCTTCCCACTTCGTCACCAATGGCGGATCGAATCATGTCTGAAATCAGCATCTTCATCAGAAATCGATATGGTAAGAAACAAAGAAGGTATCTTTGCACCAAAGGAGAAGAAAGTTGTAGTCTTATGGGACTTAGACAACAAACCACCACGAGGTCCACCATACGAAGCCGCAACAGCTCTCCGTAAAGTCGCTGAGAAACTCGGCCGAGTCGTCGAAATCTCCGCTTACGCAAATCGTCATGCTTTTATCCATTTACCTCATTGGGTCGTCGAAGAGAGACGAGAAAGGAGGAACCTTGATTTCATGGAGAGGAAAGGAGAAGTGACTCCAATTGATCCGTACATTTGTGGTGTTTGTGGTCGCAAGTGTAAAACCAATCTTGATTTGAAGAAACATTTCAAGCAGCTTCATGAGAGGGAGAGACAGAAGAAAGTTAATAGGATGAGATCTTTGAAAGGTAAGAAACGTCAGAAGTTTAAGGAGCGTTATGTTTCAGGGAATGAGAAGTATAATGAGGCTGCGAGGAGTTTGTTGACTCCTAAAGTTGGATATGGTTTAGAGGCTGAGCTACGTCGAGCAGGGGTTTATGTTAAGACGGTTGAGGATAAGCCTCAGGCTGCGGATTGGGCGGTTAAGAGACAGATACAACATTCAATGACTAGAGGGATTGATTGGTTGGTTTTGGTGTCGGATGATAAGGATTTTTCTGATATGTTGAGGAAAGCTAGAGAGGCTGATCTTGGGACTTTGGTTGTTAGTGATATGGATAGAGCATTGGGAAGGCATGCTGATTTGTGGGTGCCTTGGAGTGGTGTTGAGAAGGGAGAGATTGGTGAGAAGGATTTGATTCCGGGGAAGAGACCAAGGTTTGAGGAGGATGAGGTGGGATTTGGTGGTAATGATGAGTTGTTTTCGTTGTCGTATGATGAGGATGAGAAGGCGGAGATGACGGTGGAGAGTGATGGGTTTGGGAGGTTTAATGTATCGGCGTTTTCGGAAGATGAATGGGTGGAGGATGAAGGAGACTTTGTGTTGAGTGATAGTAGTGATGATGATAGTGATGATGAGCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NYN

Protein Analysis

396

Amino Acids

45.75

Weight (kDa)

6.42

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52010
fragaria_vesca	FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica	MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica	Prupe.1G431900_v2.0.a1
pyrus_communis	pycom08g07810 pycom15g07340
rosa_chinensis	RchiOBHm_Chr6g0308381
rosa_laevigata	RLG00000010646
rosa_multiflora	Rmu_sc0023733.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160170
rosa_rugosa	Rorug06G0366400
rosa_samantha	Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana	Rw6G041470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	913
AciI	CCGC	6 cut(s)	136, 282, 336, 734, 743, 1055
AclWI	GGATC	2 cut(s)	146, 443
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	89, 104
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	3 cut(s)	263, 659, 923
AgsI	TTSAA	5 cut(s)	21, 502, 514, 568, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	6 cut(s)	114, 290, 520, 682, 839, 1183
AluI	AGCT	6 cut(s)	114, 290, 520, 682, 839, 1183
Alw26I	GTCTC	5 cut(s)	385, 529, 745, 967, 1131
AlwI	GGATC	2 cut(s)	146, 443
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	517, 632, 731
ApoI	RAATTY	2 cut(s)	89, 104
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	966
AsuHPI	GGTGA	2 cut(s)	119, 959
AvaII	GGWCC	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	913
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	529, 619, 718
BccI	CCATC	1 cut(s)	1070
BcnI	CCSGG	1 cut(s)	966
BcoDI	GTCTC	5 cut(s)	385, 529, 745, 967, 1131
BfaI	CTAG	2 cut(s)	774, 840
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	4 cut(s)	282, 518, 633, 732
BlpI	GCTNAGC	1 cut(s)	678
BlsI	GCNGC	4 cut(s)	283, 519, 634, 733
Bme1390I	CCNGG	1 cut(s)	966
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	407, 915
BmrFI	CCNGG	1 cut(s)	966
BmsI	GCATC	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	966
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	3 cut(s)	917, 965, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	1128, 1158
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 659, 923
Bse21I	CCTNAGG	1 cut(s)	726
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	917, 965, 977
BseGI	GGATG	5 cut(s)	561, 811, 997, 1051, 1135
BseLI	CCNNNNNNNGG	3 cut(s)	263, 659, 923
BseMII	CTCAG	3 cut(s)	297, 669, 740
BseRI	GAGGAG	2 cut(s)	652, 1001
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	3 cut(s)	529, 619, 718
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	913
BshVI	ATCGAT	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	965
BslFI	GGGAC	2 cut(s)	254, 871
BslI	CCNNNNNNNGG	3 cut(s)	263, 659, 923
BsmAI	GTCTC	5 cut(s)	385, 529, 745, 967, 1131
BsmBI	CGTCTC	1 cut(s)	385
BsmFI	GGGAC	2 cut(s)	254, 871
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	1 cut(s)	967
Bsp143I	GATC	4 cut(s)	138, 448, 560, 850
Bsp1720I	GCTNAGC	1 cut(s)	678
BspACI	CCGC	6 cut(s)	136, 282, 336, 734, 743, 1055
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	3 cut(s)	298, 670, 739
BspDI	ATCGAT	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	407, 915
BspPI	GGATC	2 cut(s)	146, 443
BspT107I	GGYRCC	1 cut(s)	913
BspTNI	GGTCTC	1 cut(s)	967
BssECI	CCNNGG	3 cut(s)	917, 965, 977
BssMI	GATC	4 cut(s)	138, 448, 560, 850
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	917, 977
Bst2BI	CACGAG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	712, 1066
Bst6I	CTCTTC	2 cut(s)	381, 965
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	4 cut(s)	244, 306, 678, 726
BstF5I	GGATG	5 cut(s)	561, 811, 997, 1051, 1135
BstKTI	GATC	4 cut(s)	141, 451, 563, 853
BstMAI	GTCTC	5 cut(s)	385, 529, 745, 967, 1131
BstMBI	GATC	4 cut(s)	138, 448, 560, 850
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 740, 845
BstNSI	RCATGY	1 cut(s)	902
BstSCI	CCNGG	1 cut(s)	964
BstV1I	GCAGC	3 cut(s)	529, 619, 718
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BstZI	CGGCCG	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	1 cut(s)	318
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	561, 811, 997, 1051, 1135
Cac8I	GCNNGC	1 cut(s)	900
CciI	TCATGA	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	5 cut(s)	147, 353, 418, 524, 899
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	4 cut(s)	244, 306, 678, 726
DpnI	GATC	4 cut(s)	140, 450, 562, 852
DpnII	GATC	4 cut(s)	138, 448, 560, 850
EaeI	YGGCCR	1 cut(s)	316
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	381, 965
EarI	CTCTTC	2 cut(s)	381, 965
EciI	GGCGGA	2 cut(s)	151, 1070
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	917, 977
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	266
Eco52I	CGGCCG	1 cut(s)	316
Eco81I	CCTNAGG	1 cut(s)	726
EcoT14I	CCWWGG	2 cut(s)	917, 977
ErhI	CCWWGG	2 cut(s)	917, 977
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	5 cut(s)	150, 356, 421, 527, 902
FaqI	GGGAC	2 cut(s)	254, 871
FatI	CATG	5 cut(s)	146, 352, 417, 523, 898
Fnu4HI	GCNGC	4 cut(s)	282, 518, 633, 732
FokI	GGATG	5 cut(s)	568, 818, 1004, 1058, 1142
Fsp4HI	GCNGC	4 cut(s)	282, 518, 633, 732
FspBI	CTAG	2 cut(s)	774, 840
GluI	GCNGC	4 cut(s)	282, 518, 633, 732
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	965
Hin1II	CATG	5 cut(s)	150, 356, 421, 527, 902
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	5 cut(s)	143, 321, 439, 649, 961
HpaII	CCGG	1 cut(s)	965
HphI	GGTGA	2 cut(s)	119, 959
Hpy166II	GTNNAC	2 cut(s)	269, 648
Hpy188I	TCNGA	7 cut(s)	153, 172, 585, 805, 823, 1111, 1190
Hpy188III	TCNNGA	2 cut(s)	494, 524
Hpy8I	GTNNAC	2 cut(s)	269, 648
Hpy99I	CGWCG	3 cut(s)	329, 386, 690
HpyAV	CCTTC	7 cut(s)	85, 191, 888, 928, 946, 1045, 1127
HpyCH4III	ACNGT	2 cut(s)	712, 1066
HpyCH4IV	ACGT	2 cut(s)	580, 685
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 740, 845
HpyF3I	CTNAG	4 cut(s)	244, 306, 678, 726
HpySE526I	ACGT	2 cut(s)	580, 685
Hsp92II	CATG	5 cut(s)	150, 356, 421, 527, 902
Kzo9I	GATC	4 cut(s)	138, 448, 560, 850
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	4 cut(s)	594, 678, 713, 978
Lsp1109I	GCAGC	3 cut(s)	529, 619, 718
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	2 cut(s)	774, 840
MaeII	ACGT	2 cut(s)	580, 685
MaeIII	GTNAC	2 cut(s)	125, 436
MalI	GATC	4 cut(s)	140, 450, 562, 852
MboI	GATC	4 cut(s)	138, 448, 560, 850
MboII	GAAGA	7 cut(s)	156, 232, 398, 514, 553, 982, 1124
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	560
MluCI	AATT	5 cut(s)	16, 82, 89, 104, 444
MlyI	GAGTC	3 cut(s)	330, 433, 643
MmeI	TCCRAC	2 cut(s)	640, 783
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	5 cut(s)	549, 591, 705, 747, 1092
MspI	CCGG	1 cut(s)	965
MspR9I	CCNGG	1 cut(s)	966
MunI	CAATTG	1 cut(s)	444
MwoI	GCNNNNNNNGC	3 cut(s)	287, 740, 845
NciI	CCSGG	1 cut(s)	966
NdeII	GATC	4 cut(s)	138, 448, 560, 850
NlaIII	CATG	5 cut(s)	150, 356, 421, 527, 902
NlaIV	GGNNCC	2 cut(s)	407, 915
NmeAIII	GCCGAG	2 cut(s)	294, 344
NmuCI	GTSAC	2 cut(s)	125, 436
NspI	RCATGY	1 cut(s)	902
PaeI	GCATGC	1 cut(s)	902
PagI	TCATGA	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	143, 961
PkrI	GCNGC	4 cut(s)	283, 519, 634, 733
PleI	GAGTC	3 cut(s)	329, 433, 643
PpsI	GAGTC	3 cut(s)	329, 433, 643
PspN4I	GGNNCC	2 cut(s)	407, 915
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	5 cut(s)	549, 591, 705, 747, 1092
SatI	GCNGC	4 cut(s)	282, 518, 633, 732
Sau3AI	GATC	4 cut(s)	138, 448, 560, 850
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	3 cut(s)	330, 433, 643
ScrFI	CCNGG	1 cut(s)	966
SfaNI	GCATC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	266
SphI	GCATGC	1 cut(s)	902
Sse9I	AATT	5 cut(s)	16, 82, 89, 104, 444
SsiI	CCGC	6 cut(s)	136, 282, 336, 734, 743, 1055
SspMI	CTAG	2 cut(s)	774, 840
StyD4I	CCNGG	1 cut(s)	964
StyI	CCWWGG	2 cut(s)	917, 977
TaaI	ACNGT	2 cut(s)	712, 1066
TaiI	ACGT	2 cut(s)	583, 688
TaqI	TCGA	6 cut(s)	24, 141, 177, 327, 384, 688
TasI	AATT	5 cut(s)	16, 82, 89, 104, 444
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	143, 961
Tru1I	TTAA	5 cut(s)	549, 591, 705, 747, 1092
Tru9I	TTAA	5 cut(s)	549, 591, 705, 747, 1092
TseFI	GTSAC	2 cut(s)	125, 436
TseI	GCWGC	3 cut(s)	517, 632, 731
Tsp45I	GTSAC	2 cut(s)	125, 436
TspDTI	ATGAA	5 cut(s)	156, 406, 512, 1131, 1146
TspGWI	ACGGA	2 cut(s)	284, 441
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	89, 104
XceI	RCATGY	1 cut(s)	902
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	774, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.