MD15G1078700.v1.1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011968
Physical Location & Seq
Forward (+)
5375216 .. 5375793
578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1078700.v1.1.491

Sequence Viewer

Length: 537 bp
ATGAACCATGAAGCTAAGCTCCTCTGCACCTTTCCCTATAAACCCTTCCCTCCAATTTCCCTCCATTCCTCCCACTCCCCCTTCTTCCATTCAAAACGCGCTTTTCAACCCCAACCCATCACCACCACCGCCGTCACCTCAACCACTACGAATTGCCGCTGCGCCGTCATCAAGTCATCCGCAAGCTCCGAAATCGACATGGTGCAAAACAAGCAGGGCATATACATGCCGAAGCAGAAGAAAGTCGTGATCTTGTGGGACCTGGACAACAAACCCCCTCGCGGGCCGCCGTACCAGGCGGCGATGGCGCTGAAACAGCTAGCCCAGCGCTTCGGCGAGGTCGTGGACGCGTCGGCCTACGCCAACCGCCACGCGTTCGTTCATTTGCCGCAGTGGGTTATCGAAGAGCGCCGCGAGCGGAAGCAACTGGATATTTTGGAGCGCAATGGTGTGGTAACGCCGCCGGAGCCGTACATCTGCGGCGTCTGCGGGCGGAAATGCAAGTCGAATTTGGATTTGAAGAAGCATTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

179

Amino Acids

20.24

Weight (kDa)

9.62

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 418
AccII CGCG 5 cut(s) 99, 282, 350, 374, 414
AcsI RAATTY 1 cut(s) 508
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 2 cut(s) 293, 473
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 281, 282
AflIII ACRYGT 2 cut(s) 348, 372
AgsI TTSAA 4 cut(s) 93, 107, 520, 532
AjnI CCWGG 2 cut(s) 261, 294
AluBI AGCT 4 cut(s) 14, 19, 186, 319
AluI AGCT 4 cut(s) 14, 19, 186, 319
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 2 cut(s) 284, 354
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 508
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 6 cut(s) 101, 164, 310, 330, 411, 444
AspS9I GGNCC 2 cut(s) 259, 284
AsuHPI GGTGA 2 cut(s) 112, 127
AsuNHI GCTAGC 1 cut(s) 319
AvaII GGWCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 125, 298
BceAI ACGGC 4 cut(s) 116, 149, 274, 454
BciT130I CCWGG 2 cut(s) 263, 296
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 3 cut(s) 311, 331, 412
BisI GCNGC 8 cut(s) 157, 160, 287, 300, 389, 412, 461, 481
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 8 cut(s) 158, 161, 288, 301, 390, 413, 462, 482
Bme1390I CCNGG 2 cut(s) 263, 296
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 259, 284
BmiI GGNNCC 2 cut(s) 260, 468
BmrFI CCNGG 2 cut(s) 263, 296
BmtI GCTAGC 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 483
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 282
Bse1I ACTGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 2 cut(s) 263, 296
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 281, 282
BseMI GCAATG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 5 cut(s) 99, 282, 350, 374, 414
BshFI GGCC 2 cut(s) 286, 356
BsiSI CCGG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 281, 282
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 2 cut(s) 286, 356
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 286, 356
BspFNI CGCG 5 cut(s) 99, 282, 350, 374, 414
BspLI GGNNCC 2 cut(s) 260, 468
BspOI GCTAGC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 399
BsrBI CCGCTC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 1 cut(s) 432
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 263, 296
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 483
BstC8I GCNNGC 5 cut(s) 184, 284, 321, 416, 491
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 5 cut(s) 99, 282, 350, 374, 414
BstH2I RGCGCY 3 cut(s) 311, 331, 412
BstHHI GCGC 6 cut(s) 101, 164, 310, 330, 411, 444
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 7 cut(s) 211, 305, 316, 325, 415, 466, 486
BstNI CCWGG 2 cut(s) 263, 296
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 261, 294
BstUI CGCG 5 cut(s) 99, 282, 350, 374, 414
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 286, 356
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 5 cut(s) 184, 284, 321, 416, 491
CfoI GCGC 6 cut(s) 101, 164, 310, 330, 411, 444
Cfr13I GGNCC 2 cut(s) 259, 284
CseI GACGC 3 cut(s) 339, 356, 472
Csp6I GTAC 2 cut(s) 292, 472
CviAII CATG 3 cut(s) 8, 199, 226
CviJI RGCY 8 cut(s) 14, 19, 186, 286, 319, 323, 356, 469
CviKI_1 RGCY 8 cut(s) 14, 19, 186, 286, 319, 323, 356, 469
CviQI GTAC 2 cut(s) 292, 472
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 261, 294
FaeI CATG 3 cut(s) 11, 202, 229
FaiI YATR 6 cut(s) 9, 39, 200, 221, 223, 227
FaqI GGGAC 1 cut(s) 272
FatI CATG 3 cut(s) 7, 198, 225
FauI CCCGC 2 cut(s) 275, 482
Fnu4HI GCNGC 8 cut(s) 157, 160, 287, 300, 389, 412, 461, 481
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 8 cut(s) 157, 160, 287, 300, 389, 412, 461, 481
FspBI CTAG 1 cut(s) 320
GlaI GCGC 6 cut(s) 100, 163, 309, 329, 410, 443
GluI GCNGC 8 cut(s) 157, 160, 287, 300, 389, 412, 461, 481
GsaI CCCAGC 1 cut(s) 328
HaeII RGCGCY 3 cut(s) 311, 331, 412
HaeIII GGCC 2 cut(s) 286, 356
HapII CCGG 1 cut(s) 464
HgaI GACGC 3 cut(s) 339, 356, 472
HhaI GCGC 6 cut(s) 101, 164, 310, 330, 411, 444
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 3 cut(s) 11, 202, 229
Hin6I GCGC 6 cut(s) 99, 162, 308, 328, 409, 442
HinP1I GCGC 6 cut(s) 99, 162, 308, 328, 409, 442
HpaII CCGG 1 cut(s) 464
HphI GGTGA 2 cut(s) 112, 127
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 2 cut(s) 55, 91
HpyCH4V TGCA 3 cut(s) 27, 205, 501
HpyF10VI GCNNNNNNNGC 7 cut(s) 211, 305, 316, 325, 415, 466, 486
HpyF3I CTNAG 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 3 cut(s) 11, 202, 229
HspAI GCGC 6 cut(s) 99, 162, 308, 328, 409, 442
Kzo9I GATC 1 cut(s) 249
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 4 cut(s) 24, 191, 439, 466
LpnPI CCDG 8 cut(s) 200, 248, 275, 281, 308, 338, 413, 477
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 133, 454
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 418
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 76, 250, 416, 532
MluCI AATT 3 cut(s) 54, 151, 508
MluI ACGCGT 2 cut(s) 348, 372
MnlI CCTC 7 cut(s) 32, 60, 71, 79, 148, 288, 331
MroXI GAANNNNTTC 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 2 cut(s) 263, 296
MvaI CCWGG 2 cut(s) 263, 296
MvnI CGCG 5 cut(s) 99, 282, 350, 374, 414
MwoI GCNNNNNNNGC 7 cut(s) 211, 305, 316, 325, 415, 466, 486
NdeII GATC 1 cut(s) 249
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 3 cut(s) 11, 202, 229
NlaIV GGNNCC 2 cut(s) 260, 468
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 527
PkrI GCNGC 8 cut(s) 158, 161, 288, 301, 390, 413, 462, 482
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 261, 294
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 2 cut(s) 261, 294
PspN4I GGNNCC 2 cut(s) 260, 468
PspPI GGNCC 2 cut(s) 259, 284
PspPPI RGGWCCY 1 cut(s) 259
RsaI GTAC 2 cut(s) 293, 473
RsaNI GTAC 2 cut(s) 292, 472
RseI CAYNNNNRTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 399
SatI GCNGC 8 cut(s) 157, 160, 287, 300, 389, 412, 461, 481
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 259, 284
ScrFI CCNGG 2 cut(s) 263, 296
SetI ASST 8 cut(s) 16, 21, 32, 140, 188, 264, 321, 342
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 3 cut(s) 54, 151, 508
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 261, 294
TaqI TCGA 3 cut(s) 195, 402, 506
TasI AATT 3 cut(s) 54, 151, 508
TauI GCSGC 7 cut(s) 159, 289, 302, 391, 414, 463, 483
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 17, 24, 371
TspRI CASTG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.