Rroxscaffold_7G00160170

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011968
Physical Location & Seq
Forward (+)
3171084 .. 3172196
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160170.1

Sequence Viewer

Length: 1113 bp
ATGGTGAGAAACAAGCAAGGCATATACACGCCGAAACAGAAGAAAGTGGTGATTTTATGGGACCTGGACAACAAACCCCCTCGCGGGCCGCCGTACCAGGCGGCCATGGCGCTGAAACAGGTGGCCCAGCACTTCGGCGAGGTAGTTGACGTGTCGGCCTACGCCAACCGCCACGCCTTCATCCACTTGCCCAACTGGGTGGTGGAGCAGCGCCGGGAAAGGAAGCAATTAGACATTCTGGAGCGCAAGGGGATAGTCACGCCTCCCCAGCCTTACATTTGCGGAGTCTGCGGCCGGAAGTGTAAGTCGAATTTGGATTTGACGAAGCACTTCAAGCAGCTACACGAGCGGGAGCGGCAGAAGAAGCTGAACCGAATGCGGTCTCTGAAAGGGAAGAAACGGCAGCGTTTCAAGGAGAGGTTTATTTCGGGGAATCATAAGTACAATGAGGCTGCGAGTACTTTGATCAAGCCCAAGGTTGGGTATGGACTGGCGGCTGAGCTGAGAAGAGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCGCAGGCGGCGGATTGGGCATTGAAGAGGCAAATGCAGCATTCTATGAGCCGTGGGATTGACTGGTTGTTCTTGGTTTCGGACGATTCGGATTTTTCGGACATGTTGAGGAAGGCTAGAGAGTCCAGTTTGGGGACTGTGGTGGTGGGGGATTGGGATAGAGCTTTGGGGAGGCATGCGGATGTGTGGGTGCCGTGGACTGGGGTCGAAAAGGGGGAGATTTCCGAGAAGGATTTGGTGCCGAAAAGGAGGAGAAGTGAGTTCTCTGATGACGATGAGGATGAGGATGAGGAGGAGGACGATGGTGATGTTTCTGTGTTTTCGGATTTGGGATTTGGTGGTGGGAGTGAATTGGACAATGTGGTTGATGATCTTGTTGGACTAAGGTCTCAGGGGTCTGGTGGAATGAGGATTTCGGCATTTTCAGAAGGGAAGTGGAAGCAGGAGATCGGGAGGAAGAGTATGAGGAAAGTGAGGATGGGGACTATTTGTTGGAGGACAGCGAGGATGAGGATGAGGATTCAGAAGATGAAGATGGGTTCTTTTGATATAGTGAGTTTGAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

370

Amino Acids

42.46

Weight (kDa)

9.66

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 733, 781
AccBSI CCGCTC 2 cut(s) 349, 355
AccII CGCG 1 cut(s) 84
AcoI YGGCCR 2 cut(s) 102, 292
AcsI RAATTY 2 cut(s) 310, 1105
AfaI GTAC 3 cut(s) 95, 443, 460
AfiI CCNNNNNNNGG 6 cut(s) 83, 84, 479, 480, 675, 743
AflIII ACRYGT 2 cut(s) 150, 645
AgsI TTSAA 4 cut(s) 334, 412, 568, 1105
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 2 cut(s) 63, 96
AluBI AGCT 5 cut(s) 340, 367, 502, 512, 707
AluI AGCT 5 cut(s) 340, 367, 502, 512, 707
Alw26I GTCTC 2 cut(s) 387, 936
AoxI GGCC 5 cut(s) 86, 102, 123, 156, 292
ApeKI GCWGC 5 cut(s) 208, 337, 403, 452, 580
ApoI RAATTY 2 cut(s) 310, 1105
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 3 cut(s) 112, 213, 246
AspS9I GGNCC 3 cut(s) 61, 86, 124
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 16, 61, 860
AvaII GGWCC 1 cut(s) 61
BanI GGYRCC 2 cut(s) 733, 781
BauI CACGAG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 533
BbvI GCAGC 5 cut(s) 220, 349, 415, 439, 592
BccI CCATC 3 cut(s) 839, 1015, 1072
BceAI ACGGC 4 cut(s) 76, 416, 579, 721
BciT130I CCWGG 2 cut(s) 65, 98
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 387, 936
BfaI CTAG 1 cut(s) 660
BfoI RGCGCY 2 cut(s) 113, 214
BlpI GCTNAGC 1 cut(s) 498
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 65, 98, 215
Bme18I GGWCC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 3 cut(s) 61, 86, 124
BmiI GGNNCC 3 cut(s) 62, 735, 783
BmrFI CCNGG 3 cut(s) 65, 98, 215
BmrI ACTGGG 2 cut(s) 205, 753
BmuI ACTGGG 2 cut(s) 205, 753
BoxI GACNNNNGTC 2 cut(s) 746, 928
BpiI GAAGAC 1 cut(s) 533
BpmI CTGGAG 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 215
BsaI GGTCTC 2 cut(s) 387, 936
BsaJI CCNNGG 4 cut(s) 105, 474, 595, 737
BsaXI ACNNNNNCTCC 4 cut(s) 784, 814, 988, 1018
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 84, 479, 480, 675, 743
Bse1I ACTGG 5 cut(s) 200, 495, 611, 669, 748
BseBI CCWGG 2 cut(s) 65, 98
BseDI CCNNGG 4 cut(s) 105, 474, 595, 737
BseGI GGATG 7 cut(s) 180, 730, 829, 835, 1026, 1056, 1062
BseLI CCNNNNNNNGG 6 cut(s) 83, 84, 479, 480, 675, 743
BseMII CTCAG 3 cut(s) 489, 494, 947
BseNI ACTGG 5 cut(s) 200, 495, 611, 669, 748
BseRI GAGGAG 3 cut(s) 808, 848, 851
BseX3I CGGCCG 1 cut(s) 292
BseXI GCAGC 5 cut(s) 220, 349, 415, 439, 592
BseYI CCCAGC 3 cut(s) 126, 267, 512
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 5 cut(s) 88, 104, 125, 158, 294
BshNI GGYRCC 2 cut(s) 733, 781
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 2 cut(s) 214, 295
BslFI GGGAC 3 cut(s) 74, 691, 1039
BslI CCNNNNNNNGG 6 cut(s) 83, 84, 479, 480, 675, 743
BsmAI GTCTC 2 cut(s) 387, 936
BsmFI GGGAC 3 cut(s) 74, 691, 1039
BsmI GAATGC 2 cut(s) 381, 583
BsnI GGCC 5 cut(s) 88, 104, 125, 158, 294
Bso31I GGTCTC 2 cut(s) 387, 936
Bsp143I GATC 3 cut(s) 465, 913, 990
Bsp1720I GCTNAGC 1 cut(s) 498
Bsp19I CCATGG 1 cut(s) 105
BspANI GGCC 5 cut(s) 88, 104, 125, 158, 294
BspCNI CTCAG 3 cut(s) 490, 495, 946
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 62, 735, 783
BspQI GCTCTTC 1 cut(s) 502
BspT107I GGYRCC 2 cut(s) 733, 781
BspTNI GGTCTC 2 cut(s) 387, 936
BsrBI CCGCTC 2 cut(s) 349, 355
BsrI ACTGG 5 cut(s) 200, 495, 611, 669, 748
BssECI CCNNGG 4 cut(s) 105, 474, 595, 737
BssMI GATC 3 cut(s) 465, 913, 990
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 105, 474
Bst2BI CACGAG 1 cut(s) 344
Bst2UI CCWGG 2 cut(s) 65, 98
Bst4CI ACNGT 2 cut(s) 532, 682
Bst6I CTCTTC 3 cut(s) 502, 563, 995
BstC8I GCNNGC 3 cut(s) 86, 549, 720
BstDEI CTNAG 4 cut(s) 498, 503, 926, 933
BstDSI CCRYGG 3 cut(s) 105, 595, 737
BstF5I GGATG 7 cut(s) 180, 730, 829, 835, 1026, 1056, 1062
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 2 cut(s) 113, 214
BstHHI GCGC 3 cut(s) 112, 213, 246
BstKTI GATC 3 cut(s) 468, 916, 993
BstMAI GTCTC 2 cut(s) 387, 936
BstMBI GATC 3 cut(s) 465, 913, 990
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 9 cut(s) 107, 268, 288, 334, 346, 355, 364, 560, 580
BstNI CCWGG 2 cut(s) 65, 98
BstNSI RCATGY 2 cut(s) 649, 722
BstPAI GACNNNNGTC 2 cut(s) 746, 928
BstSCI CCNGG 3 cut(s) 63, 96, 213
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 5 cut(s) 220, 349, 415, 439, 592
BstV2I GAAGAC 1 cut(s) 533
BstXI CCANNNNNNTGG 1 cut(s) 199
BstZI CGGCCG 1 cut(s) 292
BsuRI GGCC 5 cut(s) 88, 104, 125, 158, 294
BtgI CCRYGG 3 cut(s) 105, 595, 737
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 7 cut(s) 180, 730, 829, 835, 1026, 1056, 1062
Cac8I GCNNGC 3 cut(s) 86, 549, 720
CfoI GCGC 3 cut(s) 112, 213, 246
Cfr13I GGNCC 3 cut(s) 61, 86, 124
Csp6I GTAC 3 cut(s) 94, 442, 459
CviAII CATG 3 cut(s) 106, 646, 719
CviQI GTAC 3 cut(s) 94, 442, 459
DdeI CTNAG 4 cut(s) 498, 503, 926, 933
DpnI GATC 3 cut(s) 467, 915, 992
DpnII GATC 3 cut(s) 465, 913, 990
EaeI YGGCCR 2 cut(s) 102, 292
EagI CGGCCG 1 cut(s) 292
Eam1104I CTCTTC 3 cut(s) 502, 563, 995
EarI CTCTTC 3 cut(s) 502, 563, 995
EciI GGCGGA 1 cut(s) 569
EclXI CGGCCG 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 105, 474
Eco31I GGTCTC 2 cut(s) 387, 936
Eco47I GGWCC 1 cut(s) 61
Eco52I CGGCCG 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 63, 96
EcoT14I CCWWGG 2 cut(s) 105, 474
ErhI CCWWGG 2 cut(s) 105, 474
FaeI CATG 3 cut(s) 109, 649, 722
FaqI GGGAC 3 cut(s) 74, 691, 1039
FatI CATG 3 cut(s) 105, 645, 718
FauI CCCGC 2 cut(s) 77, 342
FbaI TGATCA 1 cut(s) 465
FokI GGATG 7 cut(s) 167, 737, 836, 842, 1033, 1063, 1069
FspBI CTAG 1 cut(s) 660
GlaI GCGC 3 cut(s) 111, 212, 245
GsaI CCCAGC 3 cut(s) 130, 271, 516
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 2 cut(s) 113, 214
HaeIII GGCC 5 cut(s) 88, 104, 125, 158, 294
HapII CCGG 2 cut(s) 214, 295
HhaI GCGC 3 cut(s) 112, 213, 246
Hin1II CATG 3 cut(s) 109, 649, 722
Hin6I GCGC 3 cut(s) 110, 211, 244
HinP1I GCGC 3 cut(s) 110, 211, 244
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 5 cut(s) 285, 433, 629, 665, 1063
HpaII CCGG 2 cut(s) 214, 295
HphI GGTGA 3 cut(s) 16, 61, 860
Hpy166II GTNNAC 2 cut(s) 148, 741
Hpy188I TCNGA 9 cut(s) 387, 625, 634, 643, 769, 811, 868, 970, 1068
Hpy188III TCNNGA 2 cut(s) 239, 994
Hpy8I GTNNAC 2 cut(s) 148, 741
HpyAV CCTTC 4 cut(s) 187, 649, 766, 965
HpyCH4III ACNGT 2 cut(s) 532, 682
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 580
HpyF10VI GCNNNNNNNGC 9 cut(s) 107, 268, 288, 334, 346, 355, 364, 560, 580
HpyF3I CTNAG 4 cut(s) 498, 503, 926, 933
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 3 cut(s) 109, 649, 722
HspAI GCGC 3 cut(s) 110, 211, 244
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 465, 913, 990
LguI GCTCTTC 1 cut(s) 502
LmnI GCTCC 3 cut(s) 205, 241, 352
Lsp1109I GCAGC 5 cut(s) 220, 349, 415, 439, 592
MaeI CTAG 1 cut(s) 660
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 256
MalI GATC 3 cut(s) 467, 915, 992
MbiI CCGCTC 2 cut(s) 349, 355
MboI GATC 3 cut(s) 465, 913, 990
MboII GAAGA 9 cut(s) 52, 373, 406, 519, 538, 580, 1012, 1081, 1087
MluCI AATT 4 cut(s) 227, 310, 893, 1105
MlyI GAGTC 2 cut(s) 294, 674
MmeI TCCRAC 2 cut(s) 901, 1016
MroXI GAANNNNTTC 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 723
MspI CCGG 2 cut(s) 214, 295
MspR9I CCNGG 3 cut(s) 65, 98, 215
Mva1269I GAATGC 2 cut(s) 381, 583
MvaI CCWGG 2 cut(s) 65, 98
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 9 cut(s) 107, 268, 288, 334, 346, 355, 364, 560, 580
NciI CCSGG 1 cut(s) 215
NcoI CCATGG 1 cut(s) 105
NdeII GATC 3 cut(s) 465, 913, 990
NlaIII CATG 3 cut(s) 109, 649, 722
NlaIV GGNNCC 3 cut(s) 62, 735, 783
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 2 cut(s) 649, 722
PaeI GCATGC 1 cut(s) 722
PciI ACATGT 1 cut(s) 645
PciSI GCTCTTC 1 cut(s) 502
PctI GAATGC 2 cut(s) 381, 583
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 3 cut(s) 433, 629, 1063
PleI GAGTC 2 cut(s) 293, 673
PpsI GAGTC 2 cut(s) 293, 673
PpuMI RGGWCCY 1 cut(s) 61
PscI ACATGT 1 cut(s) 645
PshAI GACNNNNGTC 2 cut(s) 746, 928
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 63, 96
PspFI CCCAGC 3 cut(s) 126, 267, 512
PspGI CCWGG 2 cut(s) 63, 96
PspN4I GGNNCC 3 cut(s) 62, 735, 783
PspPI GGNCC 3 cut(s) 61, 86, 124
PspPPI RGGWCCY 1 cut(s) 61
RsaI GTAC 3 cut(s) 95, 443, 460
RsaNI GTAC 3 cut(s) 94, 442, 459
RseI CAYNNNNRTG 1 cut(s) 723
SapI GCTCTTC 1 cut(s) 502
Sau3AI GATC 3 cut(s) 465, 913, 990
Sau96I GGNCC 3 cut(s) 61, 86, 124
ScaI AGTACT 1 cut(s) 460
SchI GAGTC 2 cut(s) 294, 674
ScrFI CCNGG 3 cut(s) 65, 98, 215
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 723
SphI GCATGC 1 cut(s) 722
Sse9I AATT 4 cut(s) 227, 310, 893, 1105
SspMI CTAG 1 cut(s) 660
StyD4I CCNGG 3 cut(s) 63, 96, 213
StyI CCWWGG 2 cut(s) 105, 474
TaaI ACNGT 2 cut(s) 532, 682
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 308, 750
TasI AATT 4 cut(s) 227, 310, 893, 1105
TatI WGTACW 2 cut(s) 441, 458
TauI GCSGC 7 cut(s) 91, 104, 294, 358, 497, 547, 554
TfiI GAWTC 3 cut(s) 433, 629, 1063
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 5 cut(s) 208, 337, 403, 452, 580
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 169, 1088
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 2 cut(s) 310, 1105
XceI RCATGY 2 cut(s) 649, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 1 cut(s) 660
ZrmI AGTACT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.