Prupe.1G431900_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011968
Physical Location & Seq
Forward (+)
36986464 .. 36987747
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G431900.1

Sequence Viewer

Length: 1239 bp
ATGAACCTCCTCTGCAACCCAATACACACCTTCCCCTATAAACCCTTCCCTCTATTTTCCCTCCATTCCTCCCGCTCTCCCTTCTTCAACTCAAAACGCTCGTTTCAACCCCAACCCATCATCACCTTAAGCACAAGGACTCGGAGCTATGTTGCTATCAAGGCAGCAGCAAACTCCGAAATTGACATGGTGCAGAACAAGCAAGGCATATACACTCCGAAGCAGAAGAAGGTGGTGATCTTATGGGACTTGGACAACAAACCCCCTCGCGGGCCGCCGTACCAGGCAGCCATGGCCCTGAAACAGGTGGCTCAGCGCTTCGGTGAGGTCGTAGAGTCGTCAGCCTACGCCAACCGCCATGCGTTCGATCATTTGCCTCAGTGGGTCATCGAACAACGCCGCGAGCGCAAACAATTAGACATATTGGAGCGCAAGGGTGTAGTCGTTCCTTCTGAGCCTTACATTTGTGGAGTATGTGGTCGAAAGTGTAAGTCCAATTTGGATTTGAAGAAGCACTTCAAGCAGCTGCACGAGAGGGAGAGACAGAAGAAGCTGAATCGAATGAGGTCTCTGAAAGGGAAGAAACGGCAGCGTTTTAAGGAGAGGTTTGTATCTGGGAACCACAAGTACAATGAGGCTGCGAGGTCTTTGATCAAGCCCAAGGTTGGGTATGGGTTGGCCTCGGAGTTAAGAAGAGCGGGTGTTTTTGTGAAGACTGTGGAAGACAAGCCTCAGGCTGCTGATTGGGCATTGAAGAGGCAAATGCAGCATTCTATGAGCCGTGGGATTGACTGGTTGTTCTTGGTTTCGGACGATTCAGATTTTTCGGAGATGTTGAGGAAGGCTAGAGAGGCCAACTTGGGGACTGTGGTGGTGGGGGATTTTGACAGAGCTTTGGGAAGGCACGCGGATGTTTGGGTGCCTTGGATTGGGGTCGAAAATGGGGAGGTTTCAGAGAAGGATTTGGTACCCAAAAGGAGGAGAAGTGAGTTCTTTGATGAGGATGATGATGATAAGGGTGATGGGTTGTTTTCGCATTCAGTTTTCGATGGTGGCAGTGAATTGGACAATGTGGTTGATGAACTTGTTGTTTCTAGGCCCCTGTCTAGTGGAATGAGGATTTCGGCTTTTTCGGAAGGGGAATTGGAAGAAGGAGATTGGGTGGAAGACGATGGGGATAGTGAAGATAGTGAGGACTATTTGCTGGATAGTGAGGATGAGGAAGATGGATTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

413

Amino Acids

47.24

Weight (kDa)

6.82

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 967
AccB1I GGYRCC 2 cut(s) 919, 967
AccBSI CCGCTC 2 cut(s) 75, 698
AccII CGCG 3 cut(s) 270, 402, 908
AciI CCGC 7 cut(s) 73, 270, 275, 355, 400, 698, 908
AfaI GTAC 3 cut(s) 281, 629, 969
AfeI AGCGCT 1 cut(s) 317
AfiI CCNNNNNNNGG 8 cut(s) 269, 270, 304, 665, 666, 861, 929, 978
AflII CTTAAG 1 cut(s) 127
AgsI TTSAA 5 cut(s) 88, 107, 508, 520, 754
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 4 cut(s) 147, 526, 553, 893
AluI AGCT 4 cut(s) 147, 526, 553, 893
Alw26I GTCTC 2 cut(s) 535, 573
Aor51HI AGCGCT 1 cut(s) 317
AoxI GGCC 5 cut(s) 272, 294, 678, 852, 1097
ApeKI GCWGC 9 cut(s) 164, 167, 287, 523, 526, 589, 638, 737, 766
Asp700I GAANNNNTTC 1 cut(s) 515
Asp718I GGTACC 1 cut(s) 967
AspLEI GCGC 3 cut(s) 318, 408, 432
AspS9I GGNCC 3 cut(s) 272, 295, 1098
AsuHPI GGTGA 4 cut(s) 115, 247, 335, 1031
AxyI CCTNAGG 1 cut(s) 732
BanI GGYRCC 2 cut(s) 919, 967
BauI CACGAG 1 cut(s) 530
BbsI GAAGAC 3 cut(s) 719, 729, 1173
BbvI GCAGC 9 cut(s) 176, 179, 299, 513, 535, 601, 625, 724, 778
BccI CCATC 5 cut(s) 125, 1016, 1043, 1166, 1220
BceAI ACGGC 3 cut(s) 262, 602, 765
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 651
BcoDI GTCTC 2 cut(s) 535, 573
BfaI CTAG 3 cut(s) 846, 1095, 1107
BfoI RGCGCY 1 cut(s) 319
BfrI CTTAAG 1 cut(s) 127
BlpI GCTNAGC 1 cut(s) 312
Bme1390I CCNGG 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 272, 295, 1098
BmiI GGNNCC 4 cut(s) 620, 921, 969, 1100
BmrFI CCNGG 1 cut(s) 284
BpiI GAAGAC 3 cut(s) 719, 729, 1173
Bpu1102I GCTNAGC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 573
BsaJI CCNNGG 5 cut(s) 291, 660, 681, 781, 923
BsaXI ACNNNNNCTCC 4 cut(s) 970, 1000, 1146, 1176
Bsc4I CCNNNNNNNGG 8 cut(s) 269, 270, 304, 665, 666, 861, 929, 978
Bse1I ACTGG 1 cut(s) 797
Bse21I CCTNAGG 1 cut(s) 732
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 5 cut(s) 291, 660, 681, 781, 923
BseGI GGATG 3 cut(s) 916, 1009, 1222
BseLI CCNNNNNNNGG 8 cut(s) 269, 270, 304, 665, 666, 861, 929, 978
BseMII CTCAG 4 cut(s) 326, 392, 444, 746
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 1 cut(s) 994
BseXI GCAGC 9 cut(s) 176, 179, 299, 513, 535, 601, 625, 724, 778
BsgI GTGCAG 2 cut(s) 212, 512
Bsh1236I CGCG 3 cut(s) 270, 402, 908
BshFI GGCC 5 cut(s) 274, 296, 680, 854, 1099
BshNI GGYRCC 2 cut(s) 919, 967
BslFI GGGAC 2 cut(s) 260, 877
BslI CCNNNNNNNGG 8 cut(s) 269, 270, 304, 665, 666, 861, 929, 978
BsmAI GTCTC 2 cut(s) 535, 573
BsmFI GGGAC 2 cut(s) 260, 877
BsmI GAATGC 2 cut(s) 769, 1036
BsnI GGCC 5 cut(s) 274, 296, 680, 854, 1099
Bso31I GGTCTC 1 cut(s) 573
Bsp143I GATC 3 cut(s) 237, 367, 651
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 7 cut(s) 73, 270, 275, 355, 400, 698, 908
BspANI GGCC 5 cut(s) 274, 296, 680, 854, 1099
BspCNI CTCAG 4 cut(s) 325, 391, 445, 745
BspFNI CGCG 3 cut(s) 270, 402, 908
BspLI GGNNCC 4 cut(s) 620, 921, 969, 1100
BspQI GCTCTTC 1 cut(s) 688
BspT107I GGYRCC 2 cut(s) 919, 967
BspTI CTTAAG 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 573
BsrBI CCGCTC 2 cut(s) 75, 698
BsrI ACTGG 1 cut(s) 797
BssECI CCNNGG 5 cut(s) 291, 660, 681, 781, 923
BssMI GATC 3 cut(s) 237, 367, 651
BssSI CACGAG 1 cut(s) 530
BssT1I CCWWGG 3 cut(s) 291, 660, 923
Bst2BI CACGAG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 718, 868
Bst6I CTCTTC 2 cut(s) 688, 749
BstAFI CTTAAG 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 272, 404, 906
BstDEI CTNAG 4 cut(s) 312, 378, 453, 732
BstDSI CCRYGG 2 cut(s) 291, 781
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 3 cut(s) 916, 1009, 1222
BstFNI CGCG 3 cut(s) 270, 402, 908
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 3 cut(s) 318, 408, 432
BstKTI GATC 3 cut(s) 240, 370, 654
BstMAI GTCTC 2 cut(s) 535, 573
BstMBI GATC 3 cut(s) 237, 367, 651
BstMWI GCNNNNNNNGC 8 cut(s) 161, 199, 293, 405, 520, 746, 766, 851
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstUI CGCG 3 cut(s) 270, 402, 908
BstV1I GCAGC 9 cut(s) 176, 179, 299, 513, 535, 601, 625, 724, 778
BstV2I GAAGAC 3 cut(s) 719, 729, 1173
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 5 cut(s) 274, 296, 680, 854, 1099
BtgI CCRYGG 2 cut(s) 291, 781
BtsCI GGATG 3 cut(s) 916, 1009, 1222
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 2 cut(s) 386, 1063
Cac8I GCNNGC 3 cut(s) 272, 404, 906
CfoI GCGC 3 cut(s) 318, 408, 432
Cfr13I GGNCC 3 cut(s) 272, 295, 1098
Csp6I GTAC 3 cut(s) 280, 628, 968
CviAII CATG 3 cut(s) 187, 292, 359
CviQI GTAC 3 cut(s) 280, 628, 968
DdeI CTNAG 4 cut(s) 312, 378, 453, 732
DpnI GATC 3 cut(s) 239, 369, 653
DpnII GATC 3 cut(s) 237, 367, 651
Eam1104I CTCTTC 2 cut(s) 688, 749
EarI CTCTTC 2 cut(s) 688, 749
Eco130I CCWWGG 3 cut(s) 291, 660, 923
Eco31I GGTCTC 1 cut(s) 573
Eco47III AGCGCT 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 732
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 1098
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 3 cut(s) 291, 660, 923
ErhI CCWWGG 3 cut(s) 291, 660, 923
FaeI CATG 3 cut(s) 190, 295, 362
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 2 cut(s) 260, 877
FatI CATG 3 cut(s) 186, 291, 358
FauI CCCGC 3 cut(s) 80, 263, 691
FbaI TGATCA 1 cut(s) 651
FokI GGATG 3 cut(s) 923, 1016, 1229
FspBI CTAG 3 cut(s) 846, 1095, 1107
GlaI GCGC 3 cut(s) 317, 407, 431
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 5 cut(s) 274, 296, 680, 854, 1099
HhaI GCGC 3 cut(s) 318, 408, 432
Hin1II CATG 3 cut(s) 190, 295, 362
Hin6I GCGC 3 cut(s) 316, 406, 430
HinP1I GCGC 3 cut(s) 316, 406, 430
HinfI GANTC 4 cut(s) 139, 335, 556, 815
HphI GGTGA 4 cut(s) 115, 247, 335, 1031
HpyCH4III ACNGT 2 cut(s) 718, 868
HpyCH4V TGCA 4 cut(s) 15, 193, 529, 766
HpyF10VI GCNNNNNNNGC 8 cut(s) 161, 199, 293, 405, 520, 746, 766, 851
HpyF3I CTNAG 4 cut(s) 312, 378, 453, 732
Hsp92II CATG 3 cut(s) 190, 295, 362
HspAI GCGC 3 cut(s) 316, 406, 430
KpnI GGTACC 1 cut(s) 971
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 3 cut(s) 237, 367, 651
LguI GCTCTTC 1 cut(s) 688
LmnI GCTCC 2 cut(s) 144, 427
LpnPI CCDG 9 cut(s) 269, 290, 296, 311, 600, 719, 778, 1115, 1190
Lsp1109I GCAGC 9 cut(s) 176, 179, 299, 513, 535, 601, 625, 724, 778
MaeI CTAG 3 cut(s) 846, 1095, 1107
MalI GATC 3 cut(s) 239, 369, 653
MbiI CCGCTC 2 cut(s) 75, 698
MboI GATC 3 cut(s) 237, 367, 651
MluCI AATT 5 cut(s) 180, 413, 496, 1061, 1142
MlyI GAGTC 2 cut(s) 133, 344
MroXI GAANNNNTTC 1 cut(s) 515
MseI TTAA 3 cut(s) 128, 597, 689
MslI CAYNNNNRTG 1 cut(s) 909
MspA1I CMGCKG 1 cut(s) 526
MspCI CTTAAG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 284
Mva1269I GAATGC 2 cut(s) 769, 1036
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 3 cut(s) 270, 402, 908
MwoI GCNNNNNNNGC 8 cut(s) 161, 199, 293, 405, 520, 746, 766, 851
NcoI CCATGG 1 cut(s) 291
NdeII GATC 3 cut(s) 237, 367, 651
NlaIII CATG 3 cut(s) 190, 295, 362
NlaIV GGNNCC 4 cut(s) 620, 921, 969, 1100
PciSI GCTCTTC 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 2 cut(s) 769, 1036
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 556, 815
PleI GAGTC 2 cut(s) 133, 343
PpsI GAGTC 2 cut(s) 133, 343
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 4 cut(s) 620, 921, 969, 1100
PspPI GGNCC 3 cut(s) 272, 295, 1098
PsrI GAACNNNNNNTAC 2 cut(s) 611, 643
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 3 cut(s) 281, 629, 969
RsaNI GTAC 3 cut(s) 280, 628, 968
RseI CAYNNNNRTG 1 cut(s) 909
SapI GCTCTTC 1 cut(s) 688
SaqAI TTAA 3 cut(s) 128, 597, 689
Sau3AI GATC 3 cut(s) 237, 367, 651
Sau96I GGNCC 3 cut(s) 272, 295, 1098
SchI GAGTC 2 cut(s) 133, 344
ScrFI CCNGG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 909
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 5 cut(s) 180, 413, 496, 1061, 1142
SsiI CCGC 7 cut(s) 73, 270, 275, 355, 400, 698, 908
SspMI CTAG 3 cut(s) 846, 1095, 1107
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 3 cut(s) 291, 660, 923
TaaI ACNGT 2 cut(s) 718, 868
TaqI TCGA 6 cut(s) 366, 390, 481, 559, 936, 1047
TasI AATT 5 cut(s) 180, 413, 496, 1061, 1142
TatI WGTACW 1 cut(s) 627
TauI GCSGC 2 cut(s) 277, 402
TfiI GAWTC 2 cut(s) 556, 815
Tru1I TTAA 3 cut(s) 128, 597, 689
Tru9I TTAA 3 cut(s) 128, 597, 689
TscAI CASTG 2 cut(s) 386, 1063
TseI GCWGC 9 cut(s) 164, 167, 287, 523, 526, 589, 638, 737, 766
TspDTI ATGAA 2 cut(s) 17, 1095
TspRI CASTG 2 cut(s) 386, 1063
Vha464I CTTAAG 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 3 cut(s) 846, 1095, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.