Rh6CG491300

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011968
Physical Location & Seq
Reverse (-)
65835494 .. 65838499
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG491300.1

Sequence Viewer

Length: 1257 bp
ATGAACCCCATCATCTGCAACCCCATCCCTTATAACAAACCCCTTCCTCTCCTTTTCCTCAATTCCTCCCAATCCCAATCCCCATTCTTCAATTCCCAAATCAACCTAACCCTCAACCCAAAACACTCGTCCTCAATTTCCTTTAACAAACGAAGATGGAGGAGGAGCTATACAGCTGGCGCGAACTCCGAAATCGACATGGTGAGAAACAAGCAAGGCATATACACGCCGAAACAGAAGAAAGTGGTGATTTTGTGGGACCTGGACAACAAACCCCCTCGCGGGCCGCCGTACCAGGCGGCCATGGCGCTGAAACAGGTGGCCCAGCACTTGGGCGAGGTAGTTGACGTGTCGGCCTACGCCAACCGCCACGCCTTCATCCACTTGCCCAACTGGGTAGTGGAGCAGCGCCGGGAACGGAAGCAATTAGACATTCTGGAGCGCAAGGGGATAGTCACGCCTCCCGAGCCTTACATTTGCGGAGTCTGCGGCCGGAAGTGTAAGTCGAATTTGGATTTGACGAAGCACTTCAAGCAGCTACACGAGCGGGAGCGGCAGAAGAAGCTGAACCGAATGCGGTCTCTGAAAGGGAAGAAACGGCAGCGTTTCAAGGAGAGGTTTATTTCGGGGAATCATAAGTACAATGAGGCTGCGAGTACTTTGATCAAGCCCAAGGTTGGGTATGGACTGGCGGCTGAGCTGAGAAGAGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCGCAGGCGGCGGATTGGGCATTGAAGAGGCAAATGCAGCATTCTATGAGCCGTGGGATTGACTGGTTGTTCTTGGTTTCCGACGATTCGGATTTTTCGGACATGTTGAGGAAGGCTAGAGAGTCCACTTTGGGGACTGTGGTGGTGGGGGATTGGGATAGAGCTTTGGGGAGGCATGCGGATGTGTGGGTGCCGTGGACTGAGGTCGAAAAGGGGGAGATTTCCGAGAAGGATTTGGTGCCGAAAAGGAGGAGAAGTGAGTTCTCTGATGAGGATGAGGATGTTTCCGTGTTTTCGGATTTGGGATTTGGTGGTGGGAGTGAATTGGACAATGTGGTTGATGATCTTGTTGGACTAAGGTCTCAGGGGTCTGGTGGAATGAGGATTTCGGCATTTTCAGAAGGGGAAGTGGAAGAAGGAGATTGGGAGGAAGACTATGAGGAAAGTGAGGATGGGGACTATTTGTTGGAGGACAGCGAGGATGAGGATTCAGAAGATGAAGATGGGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

418

Amino Acids

47.84

Weight (kDa)

6.08

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AccB1I GGYRCC 2 cut(s) 931, 979
AccB7I CCANNNNNTGG 1 cut(s) 331
AccBSI CCGCTC 2 cut(s) 547, 553
AccII CGCG 2 cut(s) 182, 282
AcoI YGGCCR 2 cut(s) 300, 490
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 3 cut(s) 293, 641, 658
AfiI CCNNNNNNNGG 6 cut(s) 281, 282, 331, 677, 678, 873
AflIII ACRYGT 2 cut(s) 348, 843
AgsI TTSAA 4 cut(s) 91, 532, 610, 766
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 2 cut(s) 261, 294
AluBI AGCT 7 cut(s) 168, 176, 538, 565, 700, 710, 905
AluI AGCT 7 cut(s) 168, 176, 538, 565, 700, 710, 905
Alw26I GTCTC 2 cut(s) 585, 1107
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 5 cut(s) 284, 300, 321, 354, 490
ApeKI GCWGC 5 cut(s) 406, 535, 601, 650, 778
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 4 cut(s) 182, 310, 411, 444
AspS9I GGNCC 3 cut(s) 259, 284, 322
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 214, 259
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 2 cut(s) 931, 979
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 731, 1179
BbvI GCAGC 5 cut(s) 418, 547, 613, 637, 790
BccI CCATC 5 cut(s) 17, 32, 150, 1187, 1238
BceAI ACGGC 4 cut(s) 274, 614, 777, 919
BciT130I CCWGG 2 cut(s) 263, 296
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 585, 1107
BfaI CTAG 1 cut(s) 858
BfoI RGCGCY 2 cut(s) 311, 412
BlpI GCTNAGC 1 cut(s) 696
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 3 cut(s) 263, 296, 413
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 3 cut(s) 259, 284, 322
BmiI GGNNCC 3 cut(s) 260, 933, 981
BmrFI CCNGG 3 cut(s) 263, 296, 413
BmrI ACTGGG 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 403
BoxI GACNNNNGTC 2 cut(s) 944, 1099
BpiI GAAGAC 2 cut(s) 731, 1179
BpmI CTGGAG 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 413
BsaI GGTCTC 2 cut(s) 585, 1107
BsaJI CCNNGG 4 cut(s) 303, 672, 793, 935
BsaXI ACNNNNNCTCC 2 cut(s) 982, 1012
Bsc4I CCNNNNNNNGG 6 cut(s) 281, 282, 331, 677, 678, 873
Bse1I ACTGG 3 cut(s) 398, 693, 809
BseBI CCWGG 2 cut(s) 263, 296
BseDI CCNNGG 4 cut(s) 303, 672, 793, 935
BseGI GGATG 7 cut(s) 24, 378, 928, 1021, 1027, 1198, 1228
BseLI CCNNNNNNNGG 6 cut(s) 281, 282, 331, 677, 678, 873
BseMII CTCAG 4 cut(s) 687, 692, 933, 1118
BseNI ACTGG 3 cut(s) 398, 693, 809
BseRI GAGGAG 3 cut(s) 175, 178, 1006
BseX3I CGGCCG 1 cut(s) 490
BseXI GCAGC 5 cut(s) 418, 547, 613, 637, 790
BseYI CCCAGC 2 cut(s) 324, 710
Bsh1236I CGCG 2 cut(s) 182, 282
Bsh1285I CGRYCG 1 cut(s) 493
BshFI GGCC 5 cut(s) 286, 302, 323, 356, 492
BshNI GGYRCC 2 cut(s) 931, 979
BsiEI CGRYCG 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 412, 493
BslFI GGGAC 3 cut(s) 272, 889, 1211
BslI CCNNNNNNNGG 6 cut(s) 281, 282, 331, 677, 678, 873
BsmAI GTCTC 2 cut(s) 585, 1107
BsmFI GGGAC 3 cut(s) 272, 889, 1211
BsmI GAATGC 2 cut(s) 579, 781
BsnI GGCC 5 cut(s) 286, 302, 323, 356, 492
Bso31I GGTCTC 2 cut(s) 585, 1107
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 2 cut(s) 663, 1084
Bsp1720I GCTNAGC 1 cut(s) 696
Bsp19I CCATGG 1 cut(s) 303
BspANI GGCC 5 cut(s) 286, 302, 323, 356, 492
BspCNI CTCAG 4 cut(s) 688, 693, 934, 1117
BspFNI CGCG 2 cut(s) 182, 282
BspLI GGNNCC 3 cut(s) 260, 933, 981
BspQI GCTCTTC 1 cut(s) 700
BspT107I GGYRCC 2 cut(s) 931, 979
BspTNI GGTCTC 2 cut(s) 585, 1107
BsrBI CCGCTC 2 cut(s) 547, 553
BsrI ACTGG 3 cut(s) 398, 693, 809
BssECI CCNNGG 4 cut(s) 303, 672, 793, 935
BssMI GATC 2 cut(s) 663, 1084
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 2 cut(s) 303, 672
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 2 cut(s) 263, 296
Bst4CI ACNGT 2 cut(s) 730, 880
Bst6I CTCTTC 2 cut(s) 700, 761
BstC8I GCNNGC 4 cut(s) 178, 284, 747, 918
BstDEI CTNAG 5 cut(s) 696, 701, 942, 1097, 1104
BstDSI CCRYGG 3 cut(s) 303, 793, 935
BstF5I GGATG 7 cut(s) 24, 378, 928, 1021, 1027, 1198, 1228
BstFNI CGCG 2 cut(s) 182, 282
BstH2I RGCGCY 2 cut(s) 311, 412
BstHHI GCGC 4 cut(s) 182, 310, 411, 444
BstKTI GATC 2 cut(s) 666, 1087
BstMAI GTCTC 2 cut(s) 585, 1107
BstMBI GATC 2 cut(s) 663, 1084
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 9 cut(s) 305, 466, 486, 532, 544, 553, 562, 758, 778
BstNI CCWGG 2 cut(s) 263, 296
BstNSI RCATGY 2 cut(s) 847, 920
BstPAI GACNNNNGTC 2 cut(s) 944, 1099
BstSCI CCNGG 3 cut(s) 261, 294, 411
BstUI CGCG 2 cut(s) 182, 282
BstV1I GCAGC 5 cut(s) 418, 547, 613, 637, 790
BstV2I GAAGAC 2 cut(s) 731, 1179
BstZI CGGCCG 1 cut(s) 490
BsuRI GGCC 5 cut(s) 286, 302, 323, 356, 492
BtgI CCRYGG 3 cut(s) 303, 793, 935
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 7 cut(s) 24, 378, 928, 1021, 1027, 1198, 1228
Cac8I GCNNGC 4 cut(s) 178, 284, 747, 918
CfoI GCGC 4 cut(s) 182, 310, 411, 444
Cfr13I GGNCC 3 cut(s) 259, 284, 322
Csp6I GTAC 3 cut(s) 292, 640, 657
CviAII CATG 4 cut(s) 199, 304, 844, 917
CviQI GTAC 3 cut(s) 292, 640, 657
DdeI CTNAG 5 cut(s) 696, 701, 942, 1097, 1104
DpnI GATC 2 cut(s) 665, 1086
DpnII GATC 2 cut(s) 663, 1084
EaeI YGGCCR 2 cut(s) 300, 490
EagI CGGCCG 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 700, 761
EarI CTCTTC 2 cut(s) 700, 761
EciI GGCGGA 1 cut(s) 767
EclXI CGGCCG 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 303, 672
Eco31I GGTCTC 2 cut(s) 585, 1107
Eco47I GGWCC 1 cut(s) 259
Eco52I CGGCCG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 261, 294
EcoT14I CCWWGG 2 cut(s) 303, 672
ErhI CCWWGG 2 cut(s) 303, 672
FaeI CATG 4 cut(s) 202, 307, 847, 920
FaqI GGGAC 3 cut(s) 272, 889, 1211
FatI CATG 4 cut(s) 198, 303, 843, 916
FauI CCCGC 2 cut(s) 275, 540
FbaI TGATCA 1 cut(s) 663
FokI GGATG 7 cut(s) 11, 365, 935, 1028, 1034, 1205, 1235
FspBI CTAG 1 cut(s) 858
GlaI GCGC 4 cut(s) 181, 309, 410, 443
GsaI CCCAGC 2 cut(s) 328, 714
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 2 cut(s) 311, 412
HaeIII GGCC 5 cut(s) 286, 302, 323, 356, 492
HapII CCGG 2 cut(s) 412, 493
HhaI GCGC 4 cut(s) 182, 310, 411, 444
Hin1II CATG 4 cut(s) 202, 307, 847, 920
Hin6I GCGC 4 cut(s) 180, 308, 409, 442
HinP1I GCGC 4 cut(s) 180, 308, 409, 442
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 5 cut(s) 483, 631, 827, 863, 1229
HpaII CCGG 2 cut(s) 412, 493
HphI GGTGA 2 cut(s) 214, 259
Hpy166II GTNNAC 3 cut(s) 346, 867, 939
Hpy188III TCNNGA 2 cut(s) 437, 464
Hpy8I GTNNAC 3 cut(s) 346, 867, 939
Hpy99I CGWCG 1 cut(s) 827
HpyAV CCTTC 6 cut(s) 53, 385, 847, 964, 1136, 1151
HpyCH4III ACNGT 2 cut(s) 730, 880
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 18, 778
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 466, 486, 532, 544, 553, 562, 758, 778
HpyF3I CTNAG 5 cut(s) 696, 701, 942, 1097, 1104
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 4 cut(s) 202, 307, 847, 920
HspAI GCGC 4 cut(s) 180, 308, 409, 442
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 2 cut(s) 663, 1084
LguI GCTCTTC 1 cut(s) 700
LmnI GCTCC 4 cut(s) 165, 403, 439, 550
Lsp1109I GCAGC 5 cut(s) 418, 547, 613, 637, 790
MaeI CTAG 1 cut(s) 858
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 454
MalI GATC 2 cut(s) 665, 1086
MbiI CCGCTC 2 cut(s) 547, 553
MboI GATC 2 cut(s) 663, 1084
MluCI AATT 6 cut(s) 61, 91, 135, 425, 508, 1064
MlyI GAGTC 2 cut(s) 492, 872
MmeI TCCRAC 3 cut(s) 846, 1072, 1188
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 921
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 412, 493
MspR9I CCNGG 3 cut(s) 263, 296, 413
Mva1269I GAATGC 2 cut(s) 579, 781
MvaI CCWGG 2 cut(s) 263, 296
MvnI CGCG 2 cut(s) 182, 282
MwoI GCNNNNNNNGC 9 cut(s) 305, 466, 486, 532, 544, 553, 562, 758, 778
NciI CCSGG 1 cut(s) 413
NcoI CCATGG 1 cut(s) 303
NdeII GATC 2 cut(s) 663, 1084
NlaIII CATG 4 cut(s) 202, 307, 847, 920
NlaIV GGNNCC 3 cut(s) 260, 933, 981
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 2 cut(s) 847, 920
PaeI GCATGC 1 cut(s) 920
PciI ACATGT 1 cut(s) 843
PciSI GCTCTTC 1 cut(s) 700
PctI GAATGC 2 cut(s) 579, 781
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 3 cut(s) 631, 827, 1229
PflMI CCANNNNNTGG 1 cut(s) 331
PleI GAGTC 2 cut(s) 491, 871
PpsI GAGTC 2 cut(s) 491, 871
PpuMI RGGWCCY 1 cut(s) 259
PscI ACATGT 1 cut(s) 843
PshAI GACNNNNGTC 2 cut(s) 944, 1099
PsiI TTATAA 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 261, 294
PspFI CCCAGC 2 cut(s) 324, 710
PspGI CCWGG 2 cut(s) 261, 294
PspN4I GGNNCC 3 cut(s) 260, 933, 981
PspPI GGNCC 3 cut(s) 259, 284, 322
PspPPI RGGWCCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 3 cut(s) 293, 641, 658
RsaNI GTAC 3 cut(s) 292, 640, 657
RseI CAYNNNNRTG 1 cut(s) 921
SapI GCTCTTC 1 cut(s) 700
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 663, 1084
Sau96I GGNCC 3 cut(s) 259, 284, 322
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 2 cut(s) 492, 872
ScrFI CCNGG 3 cut(s) 263, 296, 413
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 921
SphI GCATGC 1 cut(s) 920
Sse9I AATT 6 cut(s) 61, 91, 135, 425, 508, 1064
SspMI CTAG 1 cut(s) 858
StyD4I CCNGG 3 cut(s) 261, 294, 411
StyI CCWWGG 2 cut(s) 303, 672
TaaI ACNGT 2 cut(s) 730, 880
TaiI ACGT 1 cut(s) 351
TaqI TCGA 3 cut(s) 195, 506, 948
TasI AATT 6 cut(s) 61, 91, 135, 425, 508, 1064
TatI WGTACW 2 cut(s) 639, 656
TauI GCSGC 7 cut(s) 289, 302, 492, 556, 695, 745, 752
TfiI GAWTC 3 cut(s) 631, 827, 1229
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 5 cut(s) 406, 535, 601, 650, 778
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 17, 367, 1254
TspGWI ACGGA 2 cut(s) 433, 1018
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 508
XceI RCATGY 2 cut(s) 847, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 1 cut(s) 858
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.