pycom15g07340

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011968
Physical Location & Seq
Forward (+)
4488894 .. 4489815
922 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07340.1

Sequence Viewer

Length: 870 bp
ATGGCGCTGAAACAGCTAGCCCAGCGCTTCGGCGAGGTCGTGGACGCGTCGGCCTACGCCAACCGCCACGGTGTGGTAACGCCGCCGGAGCCGTACATCTGCGGCGTCTGCGGGCGGAAATGCAAGTCGAATTTGGATTTGAGGAGGCATTTCAAGCAGCTGCACGAGAGGGAGAGGCAGAAGAAGCTGAATCGGATGAGGTCTCCGAAGGGGAAGAAACGGCAGCGTTTTCAGGAGCGGTTTGTTTCTGGTAATCACAGGTACAATGAGGCTGCGAGGTCTATTATCAAGCCGAAAGTTGGGTACGGGTTGGCATCGGAGTTGCGGAGGGCGTGGGTTTTTGTGAAGACGGTGGAGGATAAGCCGCAGGCGGCGGATTGGGCGTTGAAGAGGCAAATGCAACATTCTATGAGCCGAGGGATTGACTGGTTGTTCTTGGTTTCGGACGATTCGGACTTTTCGGATATGATGAGGAAGGCTAGGGTGGCCAAGTTGGGGACTGTGGTAGTTGGGGACATGGATAGAGCTTTGGGAAGGCATGCTGATGTTTGGGTGCCGTGGATTGGTGTCGAAAATGGGGAGGTTTCGGAGAAGGATTTAGTGCCCAGAGGGAGTAGAAGTGAGTTCTTTGATGGGGAGGAAGATAATGGTGATGAATTGTTTTCGGATTTCGGTTTCGATGGTGGGGGTGGATTGGACAATGTGGTGGATGAACTTGTGAGAAATTCTCAGTCTAGTGGACTGAGGATTTCTGTGTTTTCGGAAGGGGAATTGGAAGGAGGAGAGCGGGTGGAAGGCGATTCGGATAGTGACGAATATCAGTTTGATAGTGAGAATGAGAATTCAGACGAGGAAGATGGGTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

290

Amino Acids

32.79

Weight (kDa)

5.45

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 553
AccB7I CCANNNNNTGG 1 cut(s) 73
AccBSI CCGCTC 2 cut(s) 238, 787
AccII CGCG 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 3 cut(s) 130, 724, 841
AcyI GRCGYC 1 cut(s) 105
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 3 cut(s) 95, 263, 305
AfeI AGCGCT 1 cut(s) 26
AfiI CCNNNNNNNGG 4 cut(s) 73, 299, 495, 563
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 2 cut(s) 154, 388
AluBI AGCT 4 cut(s) 16, 160, 187, 527
AluI AGCT 4 cut(s) 16, 160, 187, 527
Alw26I GTCTC 1 cut(s) 207
Aor51HI AGCGCT 1 cut(s) 26
AoxI GGCC 2 cut(s) 51, 486
ApeKI GCWGC 4 cut(s) 157, 160, 223, 272
ApoI RAATTY 3 cut(s) 130, 724, 841
AspLEI GCGC 2 cut(s) 7, 27
AsuHPI GGTGA 1 cut(s) 662
AsuNHI GCTAGC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 606
BalI TGGCCA 1 cut(s) 488
BanI GGYRCC 1 cut(s) 553
BauI CACGAG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 4 cut(s) 147, 169, 235, 259
BccI CCATC 3 cut(s) 626, 674, 851
BceAI ACGGC 3 cut(s) 76, 236, 541
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 3 cut(s) 17, 480, 735
BfoI RGCGCY 2 cut(s) 8, 28
BisI GCNGC 8 cut(s) 83, 103, 158, 161, 224, 273, 365, 372
BlsI GCNGC 8 cut(s) 84, 104, 159, 162, 225, 274, 366, 373
BmiI GGNNCC 2 cut(s) 90, 555
BmsI GCATC 1 cut(s) 323
BmtI GCTAGC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 712, 744
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 67, 415, 557
BsaXI ACNNNNNCTCC 4 cut(s) 604, 634, 774, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 299, 495, 563
Bse1I ACTGG 1 cut(s) 431
BseDI CCNNGG 3 cut(s) 67, 415, 557
BseGI GGATG 2 cut(s) 201, 715
BseLI CCNNNNNNNGG 4 cut(s) 73, 299, 495, 563
BseMII CTCAG 2 cut(s) 734, 743
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 2 cut(s) 157, 795
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 4 cut(s) 147, 169, 235, 259
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 53, 488
BshNI GGYRCC 1 cut(s) 553
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 2 cut(s) 511, 527
BslI CCNNNNNNNGG 4 cut(s) 73, 299, 495, 563
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 2 cut(s) 511, 527
BsnI GGCC 2 cut(s) 53, 488
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 606
BspANI GGCC 2 cut(s) 53, 488
BspCNI CTCAG 2 cut(s) 735, 742
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 90, 555
BspOI GCTAGC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 207
BsrBI CCGCTC 2 cut(s) 238, 787
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 3 cut(s) 67, 415, 557
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 3 cut(s) 71, 352, 502
Bst6I CTCTTC 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 18, 113, 369, 540
BstDEI CTNAG 2 cut(s) 729, 743
BstDSI CCRYGG 2 cut(s) 67, 557
BstF5I GGATG 2 cut(s) 201, 715
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 2 cut(s) 8, 28
BstHHI GCGC 2 cut(s) 7, 27
BstMAI GTCTC 1 cut(s) 207
BstMWI GCNNNNNNNGC 8 cut(s) 13, 22, 88, 108, 154, 184, 380, 485
BstNSI RCATGY 1 cut(s) 542
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 4 cut(s) 147, 169, 235, 259
BstV2I GAAGAC 1 cut(s) 353
BsuRI GGCC 2 cut(s) 53, 488
BtgI CCRYGG 2 cut(s) 67, 557
BtsCI GGATG 2 cut(s) 201, 715
Cac8I GCNNGC 4 cut(s) 18, 113, 369, 540
CfoI GCGC 2 cut(s) 7, 27
CseI GACGC 3 cut(s) 36, 53, 94
Csp6I GTAC 3 cut(s) 94, 262, 304
CviAII CATG 2 cut(s) 517, 539
CviQI GTAC 3 cut(s) 94, 262, 304
DdeI CTNAG 2 cut(s) 729, 743
DraIII CACNNNGTG 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
EciI GGCGGA 2 cut(s) 130, 389
Eco31I GGTCTC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 841
FaeI CATG 2 cut(s) 520, 542
FaiI YATR 4 cut(s) 410, 467, 518, 540
FaqI GGGAC 2 cut(s) 511, 527
FatI CATG 2 cut(s) 516, 538
FauI CCCGC 2 cut(s) 104, 780
Fnu4HI GCNGC 8 cut(s) 83, 103, 158, 161, 224, 273, 365, 372
FokI GGATG 2 cut(s) 208, 722
Fsp4HI GCNGC 8 cut(s) 83, 103, 158, 161, 224, 273, 365, 372
FspBI CTAG 3 cut(s) 17, 480, 735
GlaI GCGC 2 cut(s) 6, 26
GluI GCNGC 8 cut(s) 83, 103, 158, 161, 224, 273, 365, 372
GsaI CCCAGC 1 cut(s) 25
HaeII RGCGCY 2 cut(s) 8, 28
HaeIII GGCC 2 cut(s) 53, 488
HapII CCGG 1 cut(s) 86
HgaI GACGC 3 cut(s) 36, 53, 94
HhaI GCGC 2 cut(s) 7, 27
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 520, 542
Hin6I GCGC 2 cut(s) 5, 25
HinP1I GCGC 2 cut(s) 5, 25
HinfI GANTC 3 cut(s) 190, 449, 800
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 2 cut(s) 43, 740
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 43, 740
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 7 cut(s) 202, 469, 528, 586, 758, 770, 788
HpyCH4III ACNGT 3 cut(s) 71, 352, 502
HpyCH4V TGCA 3 cut(s) 123, 163, 400
HpyF10VI GCNNNNNNNGC 8 cut(s) 13, 22, 88, 108, 154, 184, 380, 485
HpyF3I CTNAG 2 cut(s) 729, 743
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 520, 542
HspAI GCGC 2 cut(s) 5, 25
LmnI GCTCC 2 cut(s) 88, 235
LpnPI CCDG 8 cut(s) 35, 99, 218, 234, 244, 353, 412, 619
Lsp1109I GCAGC 4 cut(s) 147, 169, 235, 259
LweI GCATC 1 cut(s) 323
MaeI CTAG 3 cut(s) 17, 480, 735
MaeIII GTNAC 2 cut(s) 76, 809
MbiI CCGCTC 2 cut(s) 238, 787
MboII GAAGA 6 cut(s) 193, 226, 358, 400, 653, 866
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 5 cut(s) 130, 656, 724, 770, 841
MluI ACGCGT 1 cut(s) 45
MluNI TGGCCA 1 cut(s) 488
Mox20I TGGCCA 1 cut(s) 488
MscI TGGCCA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 543
Msp20I TGGCCA 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 8 cut(s) 13, 22, 88, 108, 154, 184, 380, 485
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 520, 542
NlaIV GGNNCC 2 cut(s) 90, 555
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 1 cut(s) 809
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 3 cut(s) 190, 449, 800
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 8 cut(s) 84, 104, 159, 162, 225, 274, 366, 373
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 90, 555
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 3 cut(s) 95, 263, 305
RsaNI GTAC 3 cut(s) 94, 262, 304
RseI CAYNNNNRTG 1 cut(s) 543
SatI GCNGC 8 cut(s) 83, 103, 158, 161, 224, 273, 365, 372
SduI GDGCHC 1 cut(s) 606
SetI ASST 9 cut(s) 18, 39, 162, 189, 203, 263, 281, 529, 585
SfaNI GCATC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 543
SphI GCATGC 1 cut(s) 542
Sse9I AATT 5 cut(s) 130, 656, 724, 770, 841
SspMI CTAG 3 cut(s) 17, 480, 735
TaaI ACNGT 3 cut(s) 71, 352, 502
TaqI TCGA 3 cut(s) 128, 570, 678
TasI AATT 5 cut(s) 130, 656, 724, 770, 841
TauI GCSGC 4 cut(s) 85, 105, 367, 374
TfiI GAWTC 3 cut(s) 190, 449, 800
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 4 cut(s) 157, 160, 223, 272
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 2 cut(s) 669, 726
Van91I CCANNNNNTGG 1 cut(s) 73
XapI RAATTY 3 cut(s) 130, 724, 841
XceI RCATGY 1 cut(s) 542
XspI CTAG 3 cut(s) 17, 480, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.