FvH4_2g34000

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011968
Physical Location & Seq
Forward (+)
25350011 .. 25353273
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34000.t3

Sequence Viewer

Length: 1272 bp
ATGGTTCACCCCATCATCATCTCCAACCCCACCTTCACTTGTATCAAACCCCTTCCTCTCCTATTCCTCAACTCCTCCCAATCCCCATTCTTCAATCCCCAACTCACCCAAATCCTCAACCCAAAACCCTCCTCAGTTTCCTTTCACACAACACCAACATGGAGGAGGACGGCCGTGACGTCATCCGCGAACAACTCCGAGATCGACATGGTGAGAAACAAGCAGGGCGTGTACACACCGAAACACAAGAAGGTGGTGATTCTGTGGGACCTGGACAACAAGCCCCCTCGCGGCCCGCCATACCAGGCGGCCATGGCGCTGAAACAGGTGGCGCAGCACTTCGGCGAGGTCGTCGACGTGTCGGCCTACGCCAACCGCCACGCGTTCATCCACCTGCCCAACTGGGTGGTGGAGCAGCGCCGCGAGCGGAAGCAATTAGACATTTTAGAGCGCAAGGGGATCGTGACGCCGCCGGAGCCTTACGTTTGCGGAGTGTGCGGCCGCAAGTGTAAGTCGAACTTGGAGTTGACGAAGCACTTCAGGCAGCTGCACGAGCGGGAGCGGCAGAAGAAGCTGAACCGGATGAGGTCTCTGAAAGGGAAGAAACGGCAGCGTTTTAAAGAGAGGTTTATTTCGGGGAATCATAAGTATAACGAGGCGGCGAGTAGTTTGATCAAGCCGAAAGTTGGGTATGGATTGGCGTCGGAGCTGAGGAGAGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCGCAGGCGGCGGATTGGGCGTTGAAGAGGCAAATGCAGCATTCTATGAGCCGTGGGATTGACTGGTTGTTCTTGGTTTCGGACGATTCGGATTTTCAGGACATGTTGAGGAAGGCTAGGGAGGCGAGTTTGGGGACTGTGGTGGTGGGGGATTGGGATAGAGCTTTGGGGAGGCATGCGGATGTGTGGGTGCCGTGGACTGGGGTCGAGAAGGGAGAGATTTCCGAGAAGGATTTGGTGCCGAAAAGGAGGAGTGAATTCTCTGATGAGGAGGAGGATGAGGGTGGTGATGTTTCGTTATTTTCGGATTTTGATCTTAGTGGTGGGAGTGAATTGGACAATGTGGTTGATGATCTTGTTGGAGCGAGGTCTCAGGGGTCTGGTGGAGTGAGGATTTCGGCTTTTTCAGAAGGGGAAGTGGAAGAAGGAGATTGGGAGGAGGATTACGAGGAAAGTGAGGATGGAGACTATTTGTCAGAGGGTGAGGATGTGGATTCAGATGATGAAGATGGCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

424

Amino Acids

47.99

Weight (kDa)

5.77

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 402
AatII GACGTC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 402
AccB1I GGYRCC 2 cut(s) 940, 988
AccBSI CCGCTC 3 cut(s) 427, 556, 562
AccI GTMKAC 1 cut(s) 354
AccII CGCG 4 cut(s) 188, 291, 383, 423
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 3 cut(s) 171, 309, 499
AcsI RAATTY 1 cut(s) 1007
AcuI CTGAAG 1 cut(s) 523
AcyI GRCGYC 3 cut(s) 179, 467, 701
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 290, 686, 950
AflIII ACRYGT 3 cut(s) 357, 381, 852
AgsI TTSAA 2 cut(s) 94, 775
AhdI GACNNNNNGTC 1 cut(s) 1222
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 2 cut(s) 270, 303
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 547, 574, 709, 719, 914
AluI AGCT 5 cut(s) 547, 574, 709, 719, 914
Alw26I GTCTC 3 cut(s) 594, 1125, 1209
AlwI GGATC 1 cut(s) 467
AoxI GGCC 5 cut(s) 171, 292, 309, 363, 499
ApeKI GCWGC 6 cut(s) 334, 415, 544, 547, 610, 787
ApoI RAATTY 1 cut(s) 1007
Asp700I GAANNNNTTC 1 cut(s) 536
AspLEI GCGC 4 cut(s) 319, 334, 420, 453
AspS9I GGNCC 2 cut(s) 268, 293
AsuHPI GGTGA 5 cut(s) 97, 223, 268, 1049, 1244
AvaII GGWCC 1 cut(s) 268
BanI GGYRCC 2 cut(s) 940, 988
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 740
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 6 cut(s) 346, 427, 534, 556, 622, 799
BccI CCATC 3 cut(s) 20, 1205, 1253
BceAI ACGGC 5 cut(s) 158, 186, 623, 786, 928
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 2 cut(s) 272, 305
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 3 cut(s) 594, 1125, 1209
BfaI CTAG 1 cut(s) 867
BfoI RGCGCY 2 cut(s) 320, 421
BfuAI ACCTGC 1 cut(s) 402
Bme1390I CCNGG 2 cut(s) 272, 305
Bme18I GGWCC 1 cut(s) 268
BmeRI GACNNNNNGTC 1 cut(s) 1222
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 268, 293
BmiI GGNNCC 4 cut(s) 269, 477, 942, 990
BmrFI CCNGG 2 cut(s) 272, 305
BmrI ACTGGG 2 cut(s) 412, 960
BmuI ACTGGG 2 cut(s) 412, 960
BoxI GACNNNNGTC 1 cut(s) 953
BpiI GAAGAC 1 cut(s) 740
Bpu10I CCTNAGC 1 cut(s) 710
BsaBI GATNNNNATC 1 cut(s) 1062
BsaHI GRCGYC 3 cut(s) 179, 467, 701
BsaI GGTCTC 2 cut(s) 594, 1125
BsaJI CCNNGG 3 cut(s) 312, 802, 944
BsaWI WCCGGW 1 cut(s) 579
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 686, 950
Bse1I ACTGG 3 cut(s) 407, 818, 955
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 2 cut(s) 272, 305
BseDI CCNNGG 3 cut(s) 312, 802, 944
BseGI GGATG 7 cut(s) 182, 387, 588, 937, 1033, 1216, 1243
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 3 cut(s) 290, 686, 950
BseMII CTCAG 3 cut(s) 147, 701, 1136
BseNI ACTGG 3 cut(s) 407, 818, 955
BseRI GAGGAG 8 cut(s) 64, 121, 178, 727, 1015, 1034, 1037, 1202
BseX3I CGGCCG 2 cut(s) 171, 499
BseXI GCAGC 6 cut(s) 346, 427, 534, 556, 622, 799
BseYI CCCAGC 1 cut(s) 719
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 4 cut(s) 188, 291, 383, 423
Bsh1285I CGRYCG 2 cut(s) 174, 502
BshFI GGCC 5 cut(s) 173, 294, 311, 365, 501
BshNI GGYRCC 2 cut(s) 940, 988
BsiEI CGRYCG 2 cut(s) 174, 502
BsiSI CCGG 2 cut(s) 473, 580
BslFI GGGAC 2 cut(s) 281, 898
BslI CCNNNNNNNGG 3 cut(s) 290, 686, 950
BsmAI GTCTC 3 cut(s) 594, 1125, 1209
BsmFI GGGAC 2 cut(s) 281, 898
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 5 cut(s) 173, 294, 311, 365, 501
Bso31I GGTCTC 2 cut(s) 594, 1125
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 5 cut(s) 201, 459, 672, 1063, 1102
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 5 cut(s) 173, 294, 311, 365, 501
BspCNI CTCAG 3 cut(s) 146, 702, 1135
BspFNI CGCG 4 cut(s) 188, 291, 383, 423
BspLI GGNNCC 4 cut(s) 269, 477, 942, 990
BspMI ACCTGC 1 cut(s) 402
BspPI GGATC 1 cut(s) 467
BspT107I GGYRCC 2 cut(s) 940, 988
BspTNI GGTCTC 2 cut(s) 594, 1125
BsrBI CCGCTC 3 cut(s) 427, 556, 562
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 3 cut(s) 407, 818, 955
BssECI CCNNGG 3 cut(s) 312, 802, 944
BssMI GATC 5 cut(s) 201, 459, 672, 1063, 1102
BssNI GRCGYC 3 cut(s) 179, 467, 701
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 2 cut(s) 272, 305
Bst4CI ACNGT 2 cut(s) 739, 889
Bst6I CTCTTC 1 cut(s) 770
BstACI GRCGYC 3 cut(s) 179, 467, 701
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 296, 425, 756, 927
BstDEI CTNAG 4 cut(s) 133, 710, 1067, 1122
BstDSI CCRYGG 3 cut(s) 312, 802, 944
BstF5I GGATG 7 cut(s) 182, 387, 588, 937, 1033, 1216, 1243
BstFNI CGCG 4 cut(s) 188, 291, 383, 423
BstH2I RGCGCY 2 cut(s) 320, 421
BstHHI GCGC 4 cut(s) 319, 334, 420, 453
BstKTI GATC 5 cut(s) 204, 462, 675, 1066, 1105
BstMAI GTCTC 3 cut(s) 594, 1125, 1209
BstMBI GATC 5 cut(s) 201, 459, 672, 1063, 1102
BstMCI CGRYCG 2 cut(s) 174, 502
BstNI CCWGG 2 cut(s) 272, 305
BstNSI RCATGY 2 cut(s) 856, 929
BstPAI GACNNNNGTC 1 cut(s) 953
BstSCI CCNGG 2 cut(s) 270, 303
BstUI CGCG 4 cut(s) 188, 291, 383, 423
BstV1I GCAGC 6 cut(s) 346, 427, 534, 556, 622, 799
BstV2I GAAGAC 1 cut(s) 740
BstXI CCANNNNNNTGG 1 cut(s) 406
BstZI CGGCCG 2 cut(s) 171, 499
BsuRI GGCC 5 cut(s) 173, 294, 311, 365, 501
BtgI CCRYGG 3 cut(s) 312, 802, 944
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 7 cut(s) 182, 387, 588, 937, 1033, 1216, 1243
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 4 cut(s) 296, 425, 756, 927
CciNI GCGGCCGC 1 cut(s) 499
CfoI GCGC 4 cut(s) 319, 334, 420, 453
Cfr13I GGNCC 2 cut(s) 268, 293
CseI GACGC 2 cut(s) 475, 690
Csp6I GTAC 1 cut(s) 232
CviAII CATG 5 cut(s) 159, 208, 313, 853, 926
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 4 cut(s) 133, 710, 1067, 1122
DpnI GATC 5 cut(s) 203, 461, 674, 1065, 1104
DpnII GATC 5 cut(s) 201, 459, 672, 1063, 1102
DraI TTTAAA 1 cut(s) 619
DriI GACNNNNNGTC 1 cut(s) 1222
EaeI YGGCCR 3 cut(s) 171, 309, 499
EagI CGGCCG 2 cut(s) 171, 499
Eam1104I CTCTTC 1 cut(s) 770
Eam1105I GACNNNNNGTC 1 cut(s) 1222
EarI CTCTTC 1 cut(s) 770
EciI GGCGGA 1 cut(s) 776
EclXI CGGCCG 2 cut(s) 171, 499
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 2 cut(s) 594, 1125
Eco47I GGWCC 1 cut(s) 268
Eco52I CGGCCG 2 cut(s) 171, 499
Eco57I CTGAAG 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 1007
EcoRII CCWGG 2 cut(s) 270, 303
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 5 cut(s) 162, 211, 316, 856, 929
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 2 cut(s) 281, 898
FatI CATG 5 cut(s) 158, 207, 312, 852, 925
FauI CCCGC 2 cut(s) 303, 549
FbaI TGATCA 1 cut(s) 672
FblI GTMKAC 1 cut(s) 354
FokI GGATG 7 cut(s) 169, 374, 595, 944, 1040, 1223, 1250
FspBI CTAG 1 cut(s) 867
GlaI GCGC 4 cut(s) 318, 333, 419, 452
GsaI CCCAGC 1 cut(s) 723
HaeII RGCGCY 2 cut(s) 320, 421
HaeIII GGCC 5 cut(s) 173, 294, 311, 365, 501
HapII CCGG 2 cut(s) 473, 580
HgaI GACGC 2 cut(s) 475, 690
HhaI GCGC 4 cut(s) 319, 334, 420, 453
Hin1I GRCGYC 3 cut(s) 179, 467, 701
Hin1II CATG 5 cut(s) 162, 211, 316, 856, 929
Hin6I GCGC 4 cut(s) 317, 332, 418, 451
HinP1I GCGC 4 cut(s) 317, 332, 418, 451
HincII GTYRAC 2 cut(s) 355, 528
HindII GTYRAC 2 cut(s) 355, 528
HinfI GANTC 4 cut(s) 259, 640, 836, 1244
HpaII CCGG 2 cut(s) 473, 580
HphI GGTGA 5 cut(s) 97, 223, 268, 1049, 1244
Hpy166II GTNNAC 6 cut(s) 7, 232, 234, 355, 528, 948
Hpy188III TCNNGA 3 cut(s) 463, 848, 958
Hpy8I GTNNAC 6 cut(s) 7, 232, 234, 355, 528, 948
Hpy99I CGWCG 3 cut(s) 356, 359, 706
HpyAV CCTTC 8 cut(s) 43, 62, 244, 856, 955, 973, 1154, 1169
HpyCH4III ACNGT 2 cut(s) 739, 889
HpyCH4IV ACGT 3 cut(s) 179, 357, 483
HpyCH4V TGCA 2 cut(s) 550, 787
HpyF3I CTNAG 4 cut(s) 133, 710, 1067, 1122
HpySE526I ACGT 3 cut(s) 179, 357, 483
Hsp92I GRCGYC 3 cut(s) 179, 467, 701
Hsp92II CATG 5 cut(s) 162, 211, 316, 856, 929
HspAI GCGC 4 cut(s) 317, 332, 418, 451
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 5 cut(s) 201, 459, 672, 1063, 1102
LmnI GCTCC 5 cut(s) 412, 475, 559, 706, 1112
Lsp1109I GCAGC 6 cut(s) 346, 427, 534, 556, 622, 799
MaeI CTAG 1 cut(s) 867
MaeII ACGT 3 cut(s) 179, 357, 483
MaeIII GTNAC 2 cut(s) 175, 463
MalI GATC 5 cut(s) 203, 461, 674, 1065, 1104
MbiI CCGCTC 3 cut(s) 427, 556, 562
MboI GATC 5 cut(s) 201, 459, 672, 1063, 1102
MboII GAAGA 7 cut(s) 82, 580, 613, 745, 787, 1184, 1268
MluCI AATT 3 cut(s) 434, 1007, 1082
MluI ACGCGT 1 cut(s) 381
MmeI TCCRAC 3 cut(s) 48, 684, 1090
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 2 cut(s) 157, 930
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 2 cut(s) 473, 580
MspR9I CCNGG 2 cut(s) 272, 305
Mva1269I GAATGC 1 cut(s) 790
MvaI CCWGG 2 cut(s) 272, 305
MvnI CGCG 4 cut(s) 188, 291, 383, 423
NcoI CCATGG 1 cut(s) 312
NdeII GATC 5 cut(s) 201, 459, 672, 1063, 1102
NlaIII CATG 5 cut(s) 162, 211, 316, 856, 929
NlaIV GGNNCC 4 cut(s) 269, 477, 942, 990
NmuCI GTSAC 2 cut(s) 175, 463
NotI GCGGCCGC 1 cut(s) 499
NspI RCATGY 2 cut(s) 856, 929
PaeI GCATGC 1 cut(s) 929
PaqCI CACCTGC 1 cut(s) 402
PciI ACATGT 1 cut(s) 852
PcsI WCGNNNNNNNCGW 3 cut(s) 176, 185, 348
PctI GAATGC 1 cut(s) 790
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 4 cut(s) 259, 640, 836, 1244
PpuMI RGGWCCY 1 cut(s) 268
PscI ACATGT 1 cut(s) 852
PshAI GACNNNNGTC 1 cut(s) 953
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 270, 303
PspFI CCCAGC 1 cut(s) 719
PspGI CCWGG 2 cut(s) 270, 303
PspN4I GGNNCC 4 cut(s) 269, 477, 942, 990
PspPI GGNCC 2 cut(s) 268, 293
PspPPI RGGWCCY 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 2 cut(s) 157, 930
SalI GTCGAC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 618
Sau3AI GATC 5 cut(s) 201, 459, 672, 1063, 1102
Sau96I GGNCC 2 cut(s) 268, 293
ScrFI CCNGG 2 cut(s) 272, 305
SgrDI CGTCGACG 1 cut(s) 353
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 2 cut(s) 157, 930
SphI GCATGC 1 cut(s) 929
Sse9I AATT 3 cut(s) 434, 1007, 1082
SspMI CTAG 1 cut(s) 867
StyD4I CCNGG 2 cut(s) 270, 303
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 739, 889
TaiI ACGT 3 cut(s) 182, 360, 486
TaqI TCGA 4 cut(s) 204, 354, 515, 957
TasI AATT 3 cut(s) 434, 1007, 1082
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 4 cut(s) 259, 640, 836, 1244
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TseFI GTSAC 2 cut(s) 175, 463
TseI GCWGC 6 cut(s) 334, 415, 544, 547, 610, 787
Tsp45I GTSAC 2 cut(s) 175, 463
TspDTI ATGAA 2 cut(s) 376, 1269
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 1007
XceI RCATGY 2 cut(s) 856, 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 1 cut(s) 867
ZraI GACGTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.