Rmu_sc0023733.1_g000001

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023733.1
OG0011968
Physical Location & Seq
Reverse (-)
2628 .. 3917
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023733.1_g000001.1.cds

Sequence Viewer

Length: 1290 bp
atggtgaaccccatcatctgcaacccaatacacaccaccctcccttataacaaaccccttcctttccctttcctcaattcctcccaatccccattcttcaattcccaaatcaacctaaccctcaacccaaagcccccgtcctcaatttcctttaataaacgaagatggaggaggaactatacaactgtgacgtcagccgcgagctccgaaatcgacatggtgagaaacaagcaaggcatatacacgccgaaacagaagaaagtggtgattttatgggacctggacaacaaaccgcctcgcgggccgccgtaccaggcggccatggcgctgaaacaggtggcccagcacttcggcgaggtagttgacgtgtcggcctacgccaaccgccacgccttcatccacttgcccaattgggtagtggagcagcgccgggaacggaagcaattagacattctggagcgcaaggggatagtcacgcctccccagccttacatttgcggagtctgcggccggaagtgtaagtcgaatttggatttgacgaagcacttcaagcagctacacgagcgggagcggcagaagaagctgaacagaatgcggtctctgaaagggaagaaacggcagcgtttcaaggagaggtttatttcggggaatcataagtacaatgaggctgcgagtactttgatcaagcccaaggttgggtatggactggcggctgagctgagaagagctggggtttttgtgaagacggtggaggataagccgcaggcggcggattgggcattgaagaggcaaatgcagcattctatgagccgtgggattgactggttgttcttggtttcggacgattcggatttttcagacatgttgaggaaggctagagagtccagtttggggactgtggtggtgggggattgggatagagctttggggaggcatgcggatgtgtgggtgccgtggactggggtcgaaaagggggagatttccgagaaggatttggtgccgagaaggaggagaagtgagttctctgatgaggatgaggaggaggaggatggtgatgtttccttgttttcggatttgggatttggtggtgggagtgaattggacaatgtggttgatgatcttgttggactaaggtctcaagggtctggtggaatgaggatttcggcgttttcagaaggggaagtggaagaaggagattgggaggaagactatgaggaaagtgaggatggggactatttgttggaggacagcgaggatgaggattcagaagatgaagatgggttcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

429

Amino Acids

49.04

Weight (kDa)

5.85

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AatII GACGTC 1 cut(s) 194
AccB1I GGYRCC 2 cut(s) 949, 997
AccBSI CCGCTC 2 cut(s) 565, 571
AccII CGCG 2 cut(s) 200, 300
AcoI YGGCCR 2 cut(s) 318, 508
AcsI RAATTY 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 3 cut(s) 311, 659, 676
AfiI CCNNNNNNNGG 5 cut(s) 299, 695, 696, 891, 959
AflIII ACRYGT 2 cut(s) 366, 861
AgsI TTSAA 4 cut(s) 100, 550, 628, 784
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 2 cut(s) 279, 312
AluBI AGCT 6 cut(s) 204, 556, 583, 718, 728, 923
AluI AGCT 6 cut(s) 204, 556, 583, 718, 728, 923
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 2 cut(s) 603, 1140
AoxI GGCC 5 cut(s) 302, 318, 339, 372, 508
ApeKI GCWGC 5 cut(s) 424, 553, 619, 668, 796
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 3 cut(s) 328, 429, 462
AspS9I GGNCC 3 cut(s) 277, 302, 340
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 4 cut(s) 16, 232, 277, 1064
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 2 cut(s) 949, 997
BanII GRGCYC 1 cut(s) 206
BauI CACGAG 1 cut(s) 560
BbsI GAAGAC 2 cut(s) 749, 1212
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 5 cut(s) 436, 565, 631, 655, 808
BccI CCATC 5 cut(s) 20, 159, 1043, 1220, 1271
BceAI ACGGC 4 cut(s) 292, 632, 795, 937
BciT130I CCWGG 2 cut(s) 281, 314
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 2 cut(s) 603, 1140
BfaI CTAG 1 cut(s) 876
BfoI RGCGCY 2 cut(s) 329, 430
BglI GCCNNNNNGGC 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 714
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 3 cut(s) 281, 314, 431
Bme18I GGWCC 1 cut(s) 277
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 3 cut(s) 277, 302, 340
BmiI GGNNCC 3 cut(s) 278, 951, 999
BmrFI CCNGG 3 cut(s) 281, 314, 431
BmrI ACTGGG 1 cut(s) 969
BmuI ACTGGG 1 cut(s) 969
BoxI GACNNNNGTC 2 cut(s) 962, 1132
BpiI GAAGAC 2 cut(s) 749, 1212
BpmI CTGGAG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 1122
BpuMI CCSGG 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 191
BsaI GGTCTC 2 cut(s) 603, 1140
BsaJI CCNNGG 4 cut(s) 321, 690, 811, 953
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 5 cut(s) 299, 695, 696, 891, 959
Bse1I ACTGG 4 cut(s) 711, 827, 885, 964
BseBI CCWGG 2 cut(s) 281, 314
BseDI CCNNGG 4 cut(s) 321, 690, 811, 953
BseGI GGATG 6 cut(s) 396, 946, 1039, 1054, 1231, 1261
BseLI CCNNNNNNNGG 5 cut(s) 299, 695, 696, 891, 959
BseMII CTCAG 2 cut(s) 705, 710
BseNI ACTGG 4 cut(s) 711, 827, 885, 964
BseRI GAGGAG 5 cut(s) 184, 1024, 1052, 1055, 1058
BseX3I CGGCCG 1 cut(s) 508
BseXI GCAGC 5 cut(s) 436, 565, 631, 655, 808
BseYI CCCAGC 3 cut(s) 342, 483, 728
Bsh1236I CGCG 2 cut(s) 200, 300
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 5 cut(s) 304, 320, 341, 374, 510
BshNI GGYRCC 2 cut(s) 949, 997
BsiEI CGRYCG 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 2 cut(s) 430, 511
BslFI GGGAC 3 cut(s) 290, 907, 1244
BslI CCNNNNNNNGG 5 cut(s) 299, 695, 696, 891, 959
BsmAI GTCTC 2 cut(s) 603, 1140
BsmFI GGGAC 3 cut(s) 290, 907, 1244
BsmI GAATGC 2 cut(s) 597, 799
BsnI GGCC 5 cut(s) 304, 320, 341, 374, 510
Bso31I GGTCTC 2 cut(s) 603, 1140
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 681, 1117
Bsp1720I GCTNAGC 1 cut(s) 714
Bsp19I CCATGG 1 cut(s) 321
BspANI GGCC 5 cut(s) 304, 320, 341, 374, 510
BspCNI CTCAG 2 cut(s) 706, 711
BspFNI CGCG 2 cut(s) 200, 300
BspLI GGNNCC 3 cut(s) 278, 951, 999
BspQI GCTCTTC 1 cut(s) 718
BspT107I GGYRCC 2 cut(s) 949, 997
BspTNI GGTCTC 2 cut(s) 603, 1140
BsrBI CCGCTC 2 cut(s) 565, 571
BsrI ACTGG 4 cut(s) 711, 827, 885, 964
BssECI CCNNGG 4 cut(s) 321, 690, 811, 953
BssMI GATC 2 cut(s) 681, 1117
BssNI GRCGYC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 560
BssT1I CCWWGG 2 cut(s) 321, 690
Bst2BI CACGAG 1 cut(s) 560
Bst2UI CCWGG 2 cut(s) 281, 314
Bst4CI ACNGT 3 cut(s) 187, 748, 898
Bst6I CTCTTC 2 cut(s) 718, 779
BstACI GRCGYC 1 cut(s) 191
BstC8I GCNNGC 4 cut(s) 202, 302, 765, 936
BstDEI CTNAG 3 cut(s) 714, 719, 1130
BstDSI CCRYGG 3 cut(s) 321, 811, 953
BstF5I GGATG 6 cut(s) 396, 946, 1039, 1054, 1231, 1261
BstFNI CGCG 2 cut(s) 200, 300
BstH2I RGCGCY 2 cut(s) 329, 430
BstHHI GCGC 3 cut(s) 328, 429, 462
BstKTI GATC 2 cut(s) 684, 1120
BstMAI GTCTC 2 cut(s) 603, 1140
BstMBI GATC 2 cut(s) 681, 1117
BstMCI CGRYCG 1 cut(s) 511
BstNI CCWGG 2 cut(s) 281, 314
BstNSI RCATGY 2 cut(s) 865, 938
BstPAI GACNNNNGTC 2 cut(s) 962, 1132
BstSCI CCNGG 3 cut(s) 279, 312, 429
BstUI CGCG 2 cut(s) 200, 300
BstV1I GCAGC 5 cut(s) 436, 565, 631, 655, 808
BstV2I GAAGAC 2 cut(s) 749, 1212
BstZI CGGCCG 1 cut(s) 508
BsuRI GGCC 5 cut(s) 304, 320, 341, 374, 510
BtgI CCRYGG 3 cut(s) 321, 811, 953
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 6 cut(s) 396, 946, 1039, 1054, 1231, 1261
Cac8I GCNNGC 4 cut(s) 202, 302, 765, 936
CfoI GCGC 3 cut(s) 328, 429, 462
Cfr13I GGNCC 3 cut(s) 277, 302, 340
Csp6I GTAC 3 cut(s) 310, 658, 675
CviAII CATG 4 cut(s) 217, 322, 862, 935
CviQI GTAC 3 cut(s) 310, 658, 675
DdeI CTNAG 3 cut(s) 714, 719, 1130
DpnI GATC 2 cut(s) 683, 1119
DpnII GATC 2 cut(s) 681, 1117
EaeI YGGCCR 2 cut(s) 318, 508
EagI CGGCCG 1 cut(s) 508
Eam1104I CTCTTC 2 cut(s) 718, 779
EarI CTCTTC 2 cut(s) 718, 779
EciI GGCGGA 1 cut(s) 785
Ecl136II GAGCTC 1 cut(s) 204
EclXI CGGCCG 1 cut(s) 508
Eco130I CCWWGG 2 cut(s) 321, 690
Eco24I GRGCYC 1 cut(s) 206
Eco31I GGTCTC 2 cut(s) 603, 1140
Eco47I GGWCC 1 cut(s) 277
Eco52I CGGCCG 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 279, 312
EcoT14I CCWWGG 2 cut(s) 321, 690
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 2 cut(s) 321, 690
FaeI CATG 4 cut(s) 220, 325, 865, 938
FaqI GGGAC 3 cut(s) 290, 907, 1244
FatI CATG 4 cut(s) 216, 321, 861, 934
FauI CCCGC 2 cut(s) 293, 558
FbaI TGATCA 1 cut(s) 681
FokI GGATG 6 cut(s) 383, 953, 1046, 1061, 1238, 1268
FriOI GRGCYC 1 cut(s) 206
FspBI CTAG 1 cut(s) 876
GlaI GCGC 3 cut(s) 327, 428, 461
GsaI CCCAGC 3 cut(s) 346, 487, 732
GsuI CTGGAG 1 cut(s) 476
HaeII RGCGCY 2 cut(s) 329, 430
HaeIII GGCC 5 cut(s) 304, 320, 341, 374, 510
HapII CCGG 2 cut(s) 430, 511
HhaI GCGC 3 cut(s) 328, 429, 462
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 4 cut(s) 220, 325, 865, 938
Hin6I GCGC 3 cut(s) 326, 427, 460
HinP1I GCGC 3 cut(s) 326, 427, 460
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 5 cut(s) 501, 649, 845, 881, 1262
HpaII CCGG 2 cut(s) 430, 511
HphI GGTGA 4 cut(s) 16, 232, 277, 1064
Hpy166II GTNNAC 3 cut(s) 7, 364, 957
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 3 cut(s) 7, 364, 957
HpyAV CCTTC 7 cut(s) 68, 403, 865, 982, 999, 1169, 1184
HpyCH4III ACNGT 3 cut(s) 187, 748, 898
HpyCH4IV ACGT 2 cut(s) 191, 366
HpyCH4V TGCA 2 cut(s) 21, 796
HpyF3I CTNAG 3 cut(s) 714, 719, 1130
HpySE526I ACGT 2 cut(s) 191, 366
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 4 cut(s) 220, 325, 865, 938
HspAI GCGC 3 cut(s) 326, 427, 460
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 2 cut(s) 681, 1117
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 4 cut(s) 209, 421, 457, 568
Lsp1109I GCAGC 5 cut(s) 436, 565, 631, 655, 808
MaeI CTAG 1 cut(s) 876
MaeII ACGT 2 cut(s) 191, 366
MaeIII GTNAC 2 cut(s) 187, 472
MalI GATC 2 cut(s) 683, 1119
MbiI CCGCTC 2 cut(s) 565, 571
MboI GATC 2 cut(s) 681, 1117
MfeI CAATTG 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 7 cut(s) 76, 100, 144, 409, 443, 526, 1097
MlyI GAGTC 2 cut(s) 510, 890
MmeI TCCRAC 2 cut(s) 1105, 1221
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 939
MspI CCGG 2 cut(s) 430, 511
MspR9I CCNGG 3 cut(s) 281, 314, 431
MunI CAATTG 1 cut(s) 409
Mva1269I GAATGC 2 cut(s) 597, 799
MvaI CCWGG 2 cut(s) 281, 314
MvnI CGCG 2 cut(s) 200, 300
NciI CCSGG 1 cut(s) 431
NcoI CCATGG 1 cut(s) 321
NdeII GATC 2 cut(s) 681, 1117
NlaIII CATG 4 cut(s) 220, 325, 865, 938
NlaIV GGNNCC 3 cut(s) 278, 951, 999
NmeAIII GCCGAG 1 cut(s) 1026
NmuCI GTSAC 2 cut(s) 187, 472
NspI RCATGY 2 cut(s) 865, 938
PaeI GCATGC 1 cut(s) 938
PciI ACATGT 1 cut(s) 861
PciSI GCTCTTC 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 2 cut(s) 597, 799
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 3 cut(s) 649, 845, 1262
PleI GAGTC 2 cut(s) 509, 889
PpsI GAGTC 2 cut(s) 509, 889
PpuMI RGGWCCY 1 cut(s) 277
PscI ACATGT 1 cut(s) 861
PshAI GACNNNNGTC 2 cut(s) 962, 1132
PsiI TTATAA 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 279, 312
PspFI CCCAGC 3 cut(s) 342, 483, 728
PspGI CCWGG 2 cut(s) 279, 312
PspN4I GGNNCC 3 cut(s) 278, 951, 999
PspPI GGNCC 3 cut(s) 277, 302, 340
PspPPI RGGWCCY 1 cut(s) 277
RsaI GTAC 3 cut(s) 311, 659, 676
RsaNI GTAC 3 cut(s) 310, 658, 675
RseI CAYNNNNRTG 1 cut(s) 939
SacI GAGCTC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 718
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 2 cut(s) 681, 1117
Sau96I GGNCC 3 cut(s) 277, 302, 340
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 2 cut(s) 510, 890
ScrFI CCNGG 3 cut(s) 281, 314, 431
SduI GDGCHC 1 cut(s) 206
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 1 cut(s) 1137
SmoI CTYRAG 1 cut(s) 1137
SphI GCATGC 1 cut(s) 938
Sse9I AATT 7 cut(s) 76, 100, 144, 409, 443, 526, 1097
SspMI CTAG 1 cut(s) 876
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 3 cut(s) 279, 312, 429
StyI CCWWGG 2 cut(s) 321, 690
TaaI ACNGT 3 cut(s) 187, 748, 898
TaiI ACGT 2 cut(s) 194, 369
TaqI TCGA 3 cut(s) 213, 524, 966
TasI AATT 7 cut(s) 76, 100, 144, 409, 443, 526, 1097
TatI WGTACW 2 cut(s) 657, 674
TauI GCSGC 8 cut(s) 200, 307, 320, 510, 574, 713, 763, 770
TfiI GAWTC 3 cut(s) 649, 845, 1262
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 2 cut(s) 187, 472
TseI GCWGC 5 cut(s) 424, 553, 619, 668, 796
Tsp45I GTSAC 2 cut(s) 187, 472
TspDTI ATGAA 2 cut(s) 385, 1287
TspGWI ACGGA 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 526
XceI RCATGY 2 cut(s) 865, 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 1 cut(s) 876
ZraI GACGTC 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.