Rh6BG486100

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011968
Physical Location & Seq
Reverse (-)
69089374 .. 69093190
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG486100.1

Sequence Viewer

Length: 1239 bp
ATGAACCCCATCATCTGCAACCCAATCCCTTATAACAAACCCCTTCCTCTCCTTTTCCTCAATTCCTCCCAATCCCCATTCTTCAATTCCCAAATCAACCCAAAACACTCGTCCTCAATTTCCTTTAACAAACGAAGATGGAGGAGGAGCTATACAGCTGGCGCGAACTCCGAAATCGACATGGTGAGAAACAAGCAAGGCATATACACGCCGAAACAGAAGAAAGTGGTGATTTTGTGGGACCTGGACAACAAACCCCCTCGCGGGCCGCCGTACCAGGCGGCCATGGCGCTGAAACAGGTGGCCCAGCACTTGGGCGAGGTAGTTGACGTGTCGGCCTACGCCAACCGCCACGCCTTCATCCACTTGCCCAACTGGGTAGTGGAGCAGCGCCGGGAACGGAAGCAATTAGACATTCTGGAGCGCAAGGGGATAGTCACGCCTCCCGAGCCTTACATTTGCGGAGTCTGCGGCCGGAAGTGTAAGTCGAATTTGGATTTGACGAAGCACTTCAAGCAGCTACACGAGCGGGAGCGGCAGAAGAAGCTGAACCGAATGCGGTCTCTGAAAGGGAAGAAACGGCAGCGTTTCAAGGAGAGGTTTATTTCGGGGAATCATAAGTACAATGAGGCTGCGAGTACTTTGATCAAGCCCAAGGTTGGGTATGGACTGGCGGCTGAGCTGAGAAGAGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCGCAGGCGGCGGATTGGGCATTGAAGAGGCAAATGCAGCATTCTATGAGCCGTGGGATTGACTGGTTGTTCTTGGTTTCCGACGATTCGGATTTTTCGGACATGTTGAGGAAGGCTAGAGAGTCCACTTTGGGGACTGTGGTGGTGGGGGATTGGGATAGAGCTTTGGGGAGGCATGCGGATGTGTGGGTGCCGTGGACTGAGGTCGAAAAGGGGGAGATTTCCGAGAAGGATTTGGTGCCGAAAAGGAGGAGAAGTGAGTTCTCTGATGAGGATGAGGATGTTTCCGTGTTTTCGGATTTGGGATTTGGTGGTGGGAGTGAATTGGACAATGTGGTTGATGATCTTGTTGGACTAAGGTCCCAGGGGTCTGGTGGAATGAGGATTTCGGCATTTTCAGAAGGGGAAGTGGAAGAAGGAGATTGGGAGGAAGACTATGAGGAAAGTGAGGATGGGGACTATTTGTTGGAGGACAGCGAGGATGAGGATTCAGAAGATGAAGATGGGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

412

Amino Acids

47.18

Weight (kDa)

6.08

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52010
fragaria_vesca FvH4_2g34000 FvH4_2g34000 FvH4_2g34000
malus_domestica MD08G1095900.v1.1 MD15G1078700.v1.1
prunus_persica Prupe.1G431900_v2.0.a1
pyrus_communis pycom08g07810 pycom15g07340
rosa_chinensis RchiOBHm_Chr6g0308381
rosa_laevigata RLG00000010646
rosa_multiflora Rmu_sc0023733.1_g000001
rosa_roxburghii Rroxscaffold_7G00160170
rosa_rugosa Rorug06G0366400
rosa_samantha Rh6AG475800 Rh6BG486100 Rh6CG491300 Rh6DG477600
rosa_wichuraiana Rw6G041470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AccB1I GGYRCC 2 cut(s) 913, 961
AccB7I CCANNNNNTGG 1 cut(s) 313
AccBSI CCGCTC 2 cut(s) 529, 535
AccII CGCG 2 cut(s) 164, 264
AcoI YGGCCR 2 cut(s) 282, 472
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 3 cut(s) 275, 623, 640
AfiI CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
AflIII ACRYGT 2 cut(s) 330, 825
AgsI TTSAA 4 cut(s) 85, 514, 592, 748
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 3 cut(s) 243, 276, 1086
AluBI AGCT 7 cut(s) 150, 158, 520, 547, 682, 692, 887
AluI AGCT 7 cut(s) 150, 158, 520, 547, 682, 692, 887
Alw26I GTCTC 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 5 cut(s) 266, 282, 303, 336, 472
ApeKI GCWGC 5 cut(s) 388, 517, 583, 632, 760
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 4 cut(s) 164, 292, 393, 426
AspS9I GGNCC 4 cut(s) 241, 266, 304, 1083
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 196, 241
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 2 cut(s) 241, 1083
BanI GGYRCC 2 cut(s) 913, 961
BauI CACGAG 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 713, 1161
BbvI GCAGC 5 cut(s) 400, 529, 595, 619, 772
BccI CCATC 4 cut(s) 17, 132, 1169, 1220
BceAI ACGGC 4 cut(s) 256, 596, 759, 901
BciT130I CCWGG 3 cut(s) 245, 278, 1088
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 1 cut(s) 840
BfoI RGCGCY 2 cut(s) 293, 394
BlpI GCTNAGC 1 cut(s) 678
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 4 cut(s) 245, 278, 395, 1088
Bme18I GGWCC 2 cut(s) 241, 1083
BmeT110I CYCGRG 1 cut(s) 446
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 4 cut(s) 241, 266, 304, 1083
BmiI GGNNCC 4 cut(s) 242, 915, 963, 1085
BmrFI CCNGG 4 cut(s) 245, 278, 395, 1088
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BoxI GACNNNNGTC 2 cut(s) 926, 1081
BpiI GAAGAC 2 cut(s) 713, 1161
BpmI CTGGAG 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 6 cut(s) 285, 654, 775, 917, 1086, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 964, 994
Bsc4I CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
Bse1I ACTGG 3 cut(s) 380, 675, 791
BseBI CCWGG 3 cut(s) 245, 278, 1088
BseDI CCNNGG 6 cut(s) 285, 654, 775, 917, 1086, 1087
BseGI GGATG 6 cut(s) 360, 910, 1003, 1009, 1180, 1210
BseLI CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
BseMII CTCAG 3 cut(s) 669, 674, 915
BseNI ACTGG 3 cut(s) 380, 675, 791
BseRI GAGGAG 3 cut(s) 157, 160, 988
BseX3I CGGCCG 1 cut(s) 472
BseXI GCAGC 5 cut(s) 400, 529, 595, 619, 772
BseYI CCCAGC 2 cut(s) 306, 692
Bsh1236I CGCG 2 cut(s) 164, 264
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 5 cut(s) 268, 284, 305, 338, 474
BshNI GGYRCC 2 cut(s) 913, 961
BsiEI CGRYCG 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 2 cut(s) 394, 475
BslFI GGGAC 4 cut(s) 254, 871, 1069, 1193
BslI CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
BsmAI GTCTC 1 cut(s) 567
BsmFI GGGAC 4 cut(s) 254, 871, 1069, 1193
BsmI GAATGC 2 cut(s) 561, 763
BsnI GGCC 5 cut(s) 268, 284, 305, 338, 474
Bso31I GGTCTC 1 cut(s) 567
BsoBI CYCGRG 1 cut(s) 446
Bsp143I GATC 2 cut(s) 645, 1066
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 285
BspANI GGCC 5 cut(s) 268, 284, 305, 338, 474
BspCNI CTCAG 3 cut(s) 670, 675, 916
BspFNI CGCG 2 cut(s) 164, 264
BspLI GGNNCC 4 cut(s) 242, 915, 963, 1085
BspQI GCTCTTC 1 cut(s) 682
BspT107I GGYRCC 2 cut(s) 913, 961
BspTNI GGTCTC 1 cut(s) 567
BsrBI CCGCTC 2 cut(s) 529, 535
BsrI ACTGG 3 cut(s) 380, 675, 791
BssECI CCNNGG 6 cut(s) 285, 654, 775, 917, 1086, 1087
BssMI GATC 2 cut(s) 645, 1066
BssSI CACGAG 1 cut(s) 524
BssT1I CCWWGG 2 cut(s) 285, 654
Bst2BI CACGAG 1 cut(s) 524
Bst2UI CCWGG 3 cut(s) 245, 278, 1088
Bst4CI ACNGT 2 cut(s) 712, 862
Bst6I CTCTTC 2 cut(s) 682, 743
BstC8I GCNNGC 4 cut(s) 160, 266, 729, 900
BstDEI CTNAG 4 cut(s) 678, 683, 924, 1079
BstDSI CCRYGG 3 cut(s) 285, 775, 917
BstF5I GGATG 6 cut(s) 360, 910, 1003, 1009, 1180, 1210
BstFNI CGCG 2 cut(s) 164, 264
BstH2I RGCGCY 2 cut(s) 293, 394
BstHHI GCGC 4 cut(s) 164, 292, 393, 426
BstKTI GATC 2 cut(s) 648, 1069
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 2 cut(s) 645, 1066
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 9 cut(s) 287, 448, 468, 514, 526, 535, 544, 740, 760
BstNI CCWGG 3 cut(s) 245, 278, 1088
BstNSI RCATGY 2 cut(s) 829, 902
BstPAI GACNNNNGTC 2 cut(s) 926, 1081
BstSCI CCNGG 4 cut(s) 243, 276, 393, 1086
BstUI CGCG 2 cut(s) 164, 264
BstV1I GCAGC 5 cut(s) 400, 529, 595, 619, 772
BstV2I GAAGAC 2 cut(s) 713, 1161
BstXI CCANNNNNNTGG 1 cut(s) 1094
BstZI CGGCCG 1 cut(s) 472
BsuRI GGCC 5 cut(s) 268, 284, 305, 338, 474
BtgI CCRYGG 3 cut(s) 285, 775, 917
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 6 cut(s) 360, 910, 1003, 1009, 1180, 1210
Cac8I GCNNGC 4 cut(s) 160, 266, 729, 900
CfoI GCGC 4 cut(s) 164, 292, 393, 426
Cfr13I GGNCC 4 cut(s) 241, 266, 304, 1083
Csp6I GTAC 3 cut(s) 274, 622, 639
CviAII CATG 4 cut(s) 181, 286, 826, 899
CviQI GTAC 3 cut(s) 274, 622, 639
DdeI CTNAG 4 cut(s) 678, 683, 924, 1079
DpnI GATC 2 cut(s) 647, 1068
DpnII GATC 2 cut(s) 645, 1066
EaeI YGGCCR 2 cut(s) 282, 472
EagI CGGCCG 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 682, 743
EarI CTCTTC 2 cut(s) 682, 743
EciI GGCGGA 1 cut(s) 749
EclXI CGGCCG 1 cut(s) 472
Eco130I CCWWGG 2 cut(s) 285, 654
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 2 cut(s) 241, 1083
Eco52I CGGCCG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 2 cut(s) 241, 1083
EcoRII CCWGG 3 cut(s) 243, 276, 1086
EcoT14I CCWWGG 2 cut(s) 285, 654
ErhI CCWWGG 2 cut(s) 285, 654
FaeI CATG 4 cut(s) 184, 289, 829, 902
FaqI GGGAC 4 cut(s) 254, 871, 1069, 1193
FatI CATG 4 cut(s) 180, 285, 825, 898
FauI CCCGC 2 cut(s) 257, 522
FbaI TGATCA 1 cut(s) 645
FokI GGATG 6 cut(s) 347, 917, 1010, 1016, 1187, 1217
FspBI CTAG 1 cut(s) 840
GlaI GCGC 4 cut(s) 163, 291, 392, 425
GsaI CCCAGC 2 cut(s) 310, 696
GsuI CTGGAG 1 cut(s) 440
HaeII RGCGCY 2 cut(s) 293, 394
HaeIII GGCC 5 cut(s) 268, 284, 305, 338, 474
HapII CCGG 2 cut(s) 394, 475
HhaI GCGC 4 cut(s) 164, 292, 393, 426
Hin1II CATG 4 cut(s) 184, 289, 829, 902
Hin6I GCGC 4 cut(s) 162, 290, 391, 424
HinP1I GCGC 4 cut(s) 162, 290, 391, 424
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 5 cut(s) 465, 613, 809, 845, 1211
HpaII CCGG 2 cut(s) 394, 475
HphI GGTGA 2 cut(s) 196, 241
Hpy166II GTNNAC 3 cut(s) 328, 849, 921
Hpy188III TCNNGA 2 cut(s) 419, 446
Hpy8I GTNNAC 3 cut(s) 328, 849, 921
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 6 cut(s) 53, 367, 829, 946, 1118, 1133
HpyCH4III ACNGT 2 cut(s) 712, 862
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 18, 760
HpyF10VI GCNNNNNNNGC 9 cut(s) 287, 448, 468, 514, 526, 535, 544, 740, 760
HpyF3I CTNAG 4 cut(s) 678, 683, 924, 1079
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 4 cut(s) 184, 289, 829, 902
HspAI GCGC 4 cut(s) 162, 290, 391, 424
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 2 cut(s) 645, 1066
LguI GCTCTTC 1 cut(s) 682
LmnI GCTCC 4 cut(s) 147, 385, 421, 532
Lsp1109I GCAGC 5 cut(s) 400, 529, 595, 619, 772
MaeI CTAG 1 cut(s) 840
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 436
MalI GATC 2 cut(s) 647, 1068
MbiI CCGCTC 2 cut(s) 529, 535
MboI GATC 2 cut(s) 645, 1066
MluCI AATT 6 cut(s) 61, 85, 117, 407, 490, 1046
MlyI GAGTC 2 cut(s) 474, 854
MmeI TCCRAC 3 cut(s) 828, 1054, 1170
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 394, 475
MspR9I CCNGG 4 cut(s) 245, 278, 395, 1088
Mva1269I GAATGC 2 cut(s) 561, 763
MvaI CCWGG 3 cut(s) 245, 278, 1088
MvnI CGCG 2 cut(s) 164, 264
MwoI GCNNNNNNNGC 9 cut(s) 287, 448, 468, 514, 526, 535, 544, 740, 760
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 285
NdeII GATC 2 cut(s) 645, 1066
NlaIII CATG 4 cut(s) 184, 289, 829, 902
NlaIV GGNNCC 4 cut(s) 242, 915, 963, 1085
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 2 cut(s) 829, 902
PaeI GCATGC 1 cut(s) 902
PasI CCCWGGG 1 cut(s) 1087
PciI ACATGT 1 cut(s) 825
PciSI GCTCTTC 1 cut(s) 682
PctI GAATGC 2 cut(s) 561, 763
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 3 cut(s) 613, 809, 1211
PflMI CCANNNNNTGG 1 cut(s) 313
PleI GAGTC 2 cut(s) 473, 853
PpsI GAGTC 2 cut(s) 473, 853
PpuMI RGGWCCY 2 cut(s) 241, 1083
PscI ACATGT 1 cut(s) 825
PshAI GACNNNNGTC 2 cut(s) 926, 1081
PsiI TTATAA 1 cut(s) 33
Psp5II RGGWCCY 2 cut(s) 241, 1083
Psp6I CCWGG 3 cut(s) 243, 276, 1086
PspFI CCCAGC 2 cut(s) 306, 692
PspGI CCWGG 3 cut(s) 243, 276, 1086
PspN4I GGNNCC 4 cut(s) 242, 915, 963, 1085
PspPI GGNCC 4 cut(s) 241, 266, 304, 1083
PspPPI RGGWCCY 2 cut(s) 241, 1083
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 3 cut(s) 275, 623, 640
RsaNI GTAC 3 cut(s) 274, 622, 639
RseI CAYNNNNRTG 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 682
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 2 cut(s) 645, 1066
Sau96I GGNCC 4 cut(s) 241, 266, 304, 1083
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 2 cut(s) 474, 854
ScrFI CCNGG 4 cut(s) 245, 278, 395, 1088
SinI GGWCC 2 cut(s) 241, 1083
SmiMI CAYNNNNRTG 1 cut(s) 903
SphI GCATGC 1 cut(s) 902
Sse9I AATT 6 cut(s) 61, 85, 117, 407, 490, 1046
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 4 cut(s) 243, 276, 393, 1086
StyI CCWWGG 2 cut(s) 285, 654
TaaI ACNGT 2 cut(s) 712, 862
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 177, 488, 930
TasI AATT 6 cut(s) 61, 85, 117, 407, 490, 1046
TatI WGTACW 2 cut(s) 621, 638
TauI GCSGC 7 cut(s) 271, 284, 474, 538, 677, 727, 734
TfiI GAWTC 3 cut(s) 613, 809, 1211
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 5 cut(s) 388, 517, 583, 632, 760
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 17, 349, 1236
TspGWI ACGGA 2 cut(s) 415, 1000
Van91I CCANNNNNTGG 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 241, 1083
XapI RAATTY 1 cut(s) 490
XceI RCATGY 2 cut(s) 829, 902
XcmI CCANNNNNNNNNTGG 2 cut(s) 379, 1094
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 840
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.