Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

21399331 .. 21400686

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTGCATTACCAGTATTCATACCAGCAGAGTCATTTCCATCGATCCTCTCACATGAAACCTTGATCAATCACTTTCGGACCAATCTTCCGAAACATTCATCAACAATCACAAGCCCTGTCCGGCAAAACTACACCGTTTCATCACCTTCCTCTCTCCTCCTCATGCCTTCTTGGTCATCTTCTTCTTCTCTCCCTTACATGGGCGTCAAGCTCGTGACCTATTTCCCTCATAACTCTTCTCAGAACTTACCTGGCATCCATGGATCCTACACACTCTTTAGCTCCACTACAGGCCAAACCTTAGCTACAATGGATGGTACTGTTTTAACCCTTTACCGTACTTCCTCTGTTTCAGGCTTAGGATCCAAAATCCTAGCTAGAGACGATAGTCAAGTGCTGATCATGGTTGGTTCCGGTGCTCTCGCACCACACCTGATCAAATCCCATCTAGCTGCGAAACCAAGCTTGAGAAGAGTGATCATATGGAACAGAACTCCACAAAGGGCTCAGGAGTTAGCTGAAACCCTCTCCAAGGATCCTCAACACAAGGAGATTTCATTCGATAGCCACGATTCGCTAGATCAAATCATTCCTCTAGGAGATATTATAAGCTGTGCAACAAACTCAACTGTTCCATTGGTCAAAGGTGAGTTCTTGAAACCCGGAACTCATCTTGACCTTGTTGGATCGTTTAGCCATGAAATGAAGGAATGTGACGACAATGCGATACAGAGAGGGAGTGTGTTTGTCGATAATGACACTGCGATGATAGAAGCAGGAGAGCTCGCGGGAGCGTTTGAGAGAGGAGTGATTAAGAGAGAAGACATTTGTGGGAATTTGGTGGAGTTGATCAAAGGTGACAAAGAAGGGAGAAAGAGTTCAACAGACATAACAGTGTTTAAGTCCGTCGGTTCGGGTACCGTAGATCTCTTAACCGCACAACTTGTTCACGAGACTTACCTCAGCCGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

325

Amino Acids

35.22

Weight (kDa)

6.3

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCD_Mu_crystall	PF02423	20 - 322	1.6e-50	Ornithine cyclodeaminase/mu-crystallin family
Shikimate_DH	PF01488	129 - 220	2.8e-10	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
Acc65I	GGTACC	1 cut(s)	920
AccB1I	GGYRCC	1 cut(s)	920
AccII	CGCG	1 cut(s)	791
AciI	CCGC	2 cut(s)	791, 939
AclWI	GGATC	8 cut(s)	40, 261, 274, 360, 373, 533, 546, 697
AcsI	RAATTY	1 cut(s)	838
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	3 cut(s)	322, 343, 922
AfiI	CCNNNNNNNGG	3 cut(s)	202, 203, 535
AgsI	TTSAA	2 cut(s)	661, 885
AjnI	CCWGG	1 cut(s)	253
AloI	GAACNNNNNNTCC	2 cut(s)	865, 897
AluBI	AGCT	9 cut(s)	214, 285, 308, 380, 455, 468, 521, 615, 787
AluI	AGCT	9 cut(s)	214, 285, 308, 380, 455, 468, 521, 615, 787
Alw21I	GWGCWC	2 cut(s)	424, 789
Alw26I	GTCTC	2 cut(s)	378, 950
AlwI	GGATC	8 cut(s)	40, 261, 274, 360, 373, 533, 546, 697
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	5, 455
ApoI	RAATTY	1 cut(s)	838
Asp700I	GAANNNNTTC	1 cut(s)	880
Asp718I	GGTACC	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	3 cut(s)	138, 662, 872
AvaII	GGWCC	1 cut(s)	81
BamHI	GGATCC	3 cut(s)	266, 365, 538
BanI	GGYRCC	1 cut(s)	920
BanII	GRGCYC	2 cut(s)	511, 789
BauI	CACGAG	2 cut(s)	215, 953
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	424, 789
BbvCI	CCTCAGC	1 cut(s)	965
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	3 cut(s)	49, 311, 456
BceAI	ACGGC	1 cut(s)	954
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	5 cut(s)	66, 402, 438, 480, 852
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	378, 950
BfaI	CTAG	5 cut(s)	377, 381, 452, 581, 599
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	928
BisI	GCNGC	2 cut(s)	6, 456
BlsI	GCNGC	2 cut(s)	7, 457
Bme1390I	CCNGG	2 cut(s)	255, 666
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	5 cut(s)	268, 367, 415, 540, 922
BmrFI	CCNGG	2 cut(s)	255, 666
BmsI	GCATC	1 cut(s)	267
BoxI	GACNNNNGTC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	831
Bpu10I	CCTNAGC	4 cut(s)	304, 361, 510, 965
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	262, 534
BsaWI	WCCGGW	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 203, 535
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	262, 534
BseGI	GGATG	2 cut(s)	258, 322
BseLI	CCNNNNNNNGG	3 cut(s)	202, 203, 535
BseMII	CTCAG	2 cut(s)	257, 524
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	3 cut(s)	149, 152, 822
BseXI	GCAGC	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	791
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	920
BshVI	ATCGAT	1 cut(s)	44
BsiHKAI	GWGCWC	2 cut(s)	424, 789
BsiSI	CCGG	3 cut(s)	124, 417, 666
BslI	CCNNNNNNNGG	3 cut(s)	202, 203, 535
BsmAI	GTCTC	2 cut(s)	378, 950
BsmBI	CGTCTC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	3 cut(s)	424, 511, 789
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	2 cut(s)	791, 939
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	3 cut(s)	256, 523, 978
BspDI	ATCGAT	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	791
BspLI	GGNNCC	5 cut(s)	268, 367, 415, 540, 922
BspPI	GGATC	8 cut(s)	40, 261, 274, 360, 373, 533, 546, 697
BspT107I	GGYRCC	1 cut(s)	920
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	262, 534
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	2 cut(s)	215, 953
BssT1I	CCWWGG	2 cut(s)	262, 534
Bst2BI	CACGAG	2 cut(s)	215, 953
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	6 cut(s)	139, 325, 341, 634, 898, 925
Bst6I	CTCTTC	2 cut(s)	244, 469
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	789
BstDEI	CTNAG	5 cut(s)	243, 304, 361, 510, 965
BstDSI	CCRYGG	1 cut(s)	262
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	258, 322
BstFNI	CGCG	1 cut(s)	791
BstMAI	GTCTC	2 cut(s)	378, 950
BstNI	CCWGG	1 cut(s)	255
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	253, 664
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	4 cut(s)	266, 365, 538, 928
BstYI	RGATCY	4 cut(s)	266, 365, 538, 928
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	258, 322
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	762, 903
Cac8I	GCNNGC	1 cut(s)	789
Cfr13I	GGNCC	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	44
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	3 cut(s)	321, 342, 921
CviAII	CATG	6 cut(s)	56, 166, 202, 263, 406, 701
CviQI	GTAC	3 cut(s)	321, 342, 921
DdeI	CTNAG	5 cut(s)	243, 304, 361, 510, 965
Eam1104I	CTCTTC	2 cut(s)	244, 469
EarI	CTCTTC	2 cut(s)	244, 469
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	2 cut(s)	262, 534
Eco24I	GRGCYC	2 cut(s)	511, 789
Eco47I	GGWCC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	787
EcoICRI	GAGCTC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	262, 534
EcoT38I	GRGCYC	2 cut(s)	511, 789
ErhI	CCWWGG	2 cut(s)	262, 534
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	6 cut(s)	59, 169, 205, 266, 409, 704
FatI	CATG	6 cut(s)	55, 165, 201, 262, 405, 700
FauI	CCCGC	1 cut(s)	784
FauNDI	CATATG	1 cut(s)	485
FbaI	TGATCA	5 cut(s)	66, 402, 438, 480, 852
Fnu4HI	GCNGC	2 cut(s)	6, 456
FokI	GGATG	2 cut(s)	245, 329
FriOI	GRGCYC	2 cut(s)	511, 789
Fsp4HI	GCNGC	2 cut(s)	6, 456
FspBI	CTAG	5 cut(s)	377, 381, 452, 581, 599
GluI	GCNGC	2 cut(s)	6, 456
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	3 cut(s)	124, 417, 666
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	59, 169, 205, 266, 409, 704
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	2 cut(s)	32, 575
HpaII	CCGG	3 cut(s)	124, 417, 666
HphI	GGTGA	3 cut(s)	138, 662, 872
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	3 cut(s)	81, 93, 246
Hpy188III	TCNNGA	5 cut(s)	217, 512, 658, 677, 953
Hpy8I	GTNNAC	1 cut(s)	952
Hpy99I	CGWCG	1 cut(s)	914
HpyAV	CCTTC	4 cut(s)	159, 180, 703, 863
HpyCH4III	ACNGT	6 cut(s)	139, 325, 341, 634, 898, 925
HpyCH4V	TGCA	2 cut(s)	8, 620
HpyF3I	CTNAG	5 cut(s)	243, 304, 361, 510, 965
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	59, 169, 205, 266, 409, 704
KpnI	GGTACC	1 cut(s)	924
Ksp22I	TGATCA	5 cut(s)	66, 402, 438, 480, 852
LmnI	GCTCC	2 cut(s)	290, 794
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	5 cut(s)	377, 381, 452, 581, 599
MaeIII	GTNAC	3 cut(s)	217, 716, 860
MboII	GAAGA	7 cut(s)	80, 174, 177, 180, 231, 486, 836
MflI	RGATCY	4 cut(s)	266, 365, 538, 928
MhlI	GDGCHC	3 cut(s)	424, 511, 789
MluCI	AATT	1 cut(s)	838
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	880
MseI	TTAA	5 cut(s)	329, 816, 903, 935, 976
MslI	CAYNNNNRTG	2 cut(s)	767, 896
MspI	CCGG	3 cut(s)	124, 417, 666
MspR9I	CCNGG	2 cut(s)	255, 666
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	791
NciI	CCSGG	1 cut(s)	666
NcoI	CCATGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	485
NlaIII	CATG	6 cut(s)	59, 169, 205, 266, 409, 704
NlaIV	GGNNCC	5 cut(s)	268, 367, 415, 540, 922
NmuCI	GTSAC	3 cut(s)	217, 716, 860
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	880
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	2 cut(s)	7, 457
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PshAI	GACNNNNGTC	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	5 cut(s)	268, 367, 415, 540, 922
PspPI	GGNCC	1 cut(s)	81
PsuI	RGATCY	4 cut(s)	266, 365, 538, 928
RsaI	GTAC	3 cut(s)	322, 343, 922
RsaNI	GTAC	3 cut(s)	321, 342, 921
RseI	CAYNNNNRTG	2 cut(s)	767, 896
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	5 cut(s)	329, 816, 903, 935, 976
SatI	GCNGC	2 cut(s)	6, 456
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	255, 666
SduI	GDGCHC	3 cut(s)	424, 511, 789
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	767, 896
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	1 cut(s)	838
SsiI	CCGC	2 cut(s)	791, 939
SspMI	CTAG	5 cut(s)	377, 381, 452, 581, 599
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	2 cut(s)	253, 664
StyI	CCWWGG	2 cut(s)	262, 534
TaaI	ACNGT	6 cut(s)	139, 325, 341, 634, 898, 925
TaqI	TCGA	3 cut(s)	44, 564, 753
TasI	AATT	1 cut(s)	838
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	5 cut(s)	329, 816, 903, 935, 976
Tru9I	TTAA	5 cut(s)	329, 816, 903, 935, 976
TscAI	CASTG	2 cut(s)	769, 903
TseFI	GTSAC	3 cut(s)	217, 716, 860
TseI	GCWGC	2 cut(s)	5, 455
Tsp45I	GTSAC	3 cut(s)	217, 716, 860
TspDTI	ATGAA	7 cut(s)	10, 72, 90, 132, 549, 717, 722
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	2 cut(s)	769, 903
VpaK11BI	GGWCC	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	880
XspI	CTAG	5 cut(s)	377, 381, 452, 581, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.