Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

22153399 .. 22154400

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTTCTACTCCTCCATCCACCCCTTCCAAAACAATCCCAGTCTTCATCACCACCGATTCCCTACACTCAATCCTCTCTCACCAAACCCTAATCAACCACTTCCACTCTTCCCTCCCCGCCGTCTCCTCCTCCCTCTGCTCCCCCCTCCGCCAAAGCCACGCTGTCTCCTCCACCTCCTCCCTCCTCCTCATGCCCTCCTGGTCCTCCTCCCCTTCTCTCCCCTACATCGGCGTCAAGCTCGTCACCTACTTCCCGCTCAACTCCGCCGTCAGCTTGCCCGGAATCCACGGCAGCTACGTCCTCTTCAGCTCCACCTCCGGCCAAACCCTCGCCACCATGGACGGCACTGCTCTCACTCTCTACCGCACTGCCTGCGTCTCCGGATTAGCTTCCAGGATCCTATCAAGAAATGACAGTGAGGTTTTGGTCATGGTCGGAGCCGGAGCTCTGGCGCCGCATTTGATCAGGGCGCATCTTGCAGCGAGGCCGGGGTTGAAGAGAGTGATCATATGGAACAGGACGGAGGAGAAGGCGAGAGCATTGGCGGCGGAGATGAGGGGGAGTTTGGGAGGTGATGGGGTGGAGTTTGGGAGCTGTGGGAGGTTGGATGAGGCGGTGGAGATGGGGGACATTGTGAGCTGCGCCACGAATTCGGAGGTGGCGCTGGTGAAGGGGGAGAGGCTGAAGGTGGGAGCTCATTTGGACTTGGTTGGCTCGTTCCAGCATTCGATGAAGGAGTGTGATGATGAGGCTGTAAGGAGGGGGAGAGTGTTTGTGGACAATGAGGCGGCGCTGGTGGAGGCCGGGGAGCTGGTTGGAGCTTTCGAGAGGGGTGTGATTGAGAAGGGTGATGTGTGTGGGATGCTGGTGGAGTTGATCAGAGGAGAGAAGGCTGGGAGGAGAAGTGATGAGGAGATTACCGTGTTCAAGTCGGTAGGATCAGCAGTTGTGGACATTCTTGCTGCACAGCTGGTGTATGAAACTTACATGAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

334

Amino Acids

35.41

Weight (kDa)

6.21

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCD_Mu_crystall	PF02423	53 - 330	1.7e-53	Ornithine cyclodeaminase/mu-crystallin family
Shikimate_DH	PF01488	130 - 230	1.1e-10	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	383
AclWI	GGATC	3 cut(s)	394, 407, 949
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	2 cut(s)	292, 707
AcyI	GRCGYC	2 cut(s)	234, 455
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	499, 931
AjnI	CCWGG	2 cut(s)	200, 395
Alw21I	GWGCWC	2 cut(s)	451, 700
Alw26I	GTCTC	3 cut(s)	130, 172, 385
AlwI	GGATC	3 cut(s)	394, 407, 949
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	3 cut(s)	322, 488, 804
ApeKI	GCWGC	4 cut(s)	294, 482, 642, 965
ApoI	RAATTY	1 cut(s)	652
AspLEI	GCGC	5 cut(s)	457, 475, 647, 667, 796
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	3 cut(s)	282, 492, 808
AsuHPI	GGTGA	6 cut(s)	43, 74, 238, 587, 682, 863
AvaII	GGWCC	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	2 cut(s)	451, 700
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	451, 700
BbvI	GCAGC	4 cut(s)	306, 494, 629, 952
BccI	CCATC	3 cut(s)	25, 572, 619
BceAI	ACGGC	4 cut(s)	107, 254, 307, 361
BciT130I	CCWGG	2 cut(s)	202, 397
BclI	TGATCA	3 cut(s)	465, 507, 879
BcnI	CCSGG	3 cut(s)	282, 492, 808
BcoDI	GTCTC	3 cut(s)	130, 172, 385
BfoI	RGCGCY	3 cut(s)	458, 668, 797
BisI	GCNGC	7 cut(s)	295, 458, 483, 549, 643, 792, 966
BlsI	GCNGC	7 cut(s)	296, 459, 484, 550, 644, 793, 967
Bme1390I	CCNGG	5 cut(s)	202, 282, 397, 492, 808
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	3 cut(s)	401, 442, 456
BmrFI	CCNGG	5 cut(s)	202, 282, 397, 492, 808
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	484, 855
BmuI	ACTGGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	37
BpuMI	CCSGG	3 cut(s)	282, 492, 808
BsaHI	GRCGYC	2 cut(s)	234, 455
BsaJI	CCNNGG	4 cut(s)	289, 339, 491, 807
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 892, 922
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	41
BseAI	TCCGGA	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	202, 397
BseDI	CCNNGG	4 cut(s)	289, 339, 491, 807
BseGI	GGATG	3 cut(s)	17, 616, 870
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	4 cut(s)	306, 494, 629, 952
BseYI	CCCAGC	1 cut(s)	896
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	3 cut(s)	324, 490, 806
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	451, 700
BsiSI	CCGG	6 cut(s)	282, 321, 384, 444, 491, 807
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	3 cut(s)	130, 172, 385
BsmBI	CGTCTC	2 cut(s)	130, 385
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	324, 490, 806
Bsp1286I	GDGCHC	2 cut(s)	451, 700
Bsp13I	TCCGGA	1 cut(s)	383
Bsp143I	GATC	5 cut(s)	399, 465, 507, 879, 941
Bsp19I	CCATGG	1 cut(s)	339
BspANI	GGCC	3 cut(s)	324, 490, 806
BspEI	TCCGGA	1 cut(s)	383
BspLI	GGNNCC	3 cut(s)	401, 442, 456
BspPI	GGATC	3 cut(s)	394, 407, 949
BspT107I	GGYRCC	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	289, 339, 491, 807
BssMI	GATC	5 cut(s)	399, 465, 507, 879, 941
BssNI	GRCGYC	2 cut(s)	234, 455
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	202, 397
Bst4CI	ACNGT	2 cut(s)	419, 925
Bst6I	CTCTTC	3 cut(s)	115, 311, 494
BstACI	GRCGYC	2 cut(s)	234, 455
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	278, 376
BstDSI	CCRYGG	2 cut(s)	289, 339
BstF5I	GGATG	3 cut(s)	17, 616, 870
BstH2I	RGCGCY	3 cut(s)	458, 668, 797
BstHHI	GCGC	5 cut(s)	457, 475, 647, 667, 796
BstKTI	GATC	5 cut(s)	402, 468, 510, 882, 944
BstMAI	GTCTC	3 cut(s)	130, 172, 385
BstMBI	GATC	5 cut(s)	399, 465, 507, 879, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 479, 548
BstNI	CCWGG	2 cut(s)	202, 397
BstSCI	CCNGG	5 cut(s)	200, 280, 395, 490, 806
BstV1I	GCAGC	4 cut(s)	306, 494, 629, 952
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	324, 490, 806
BtgI	CCRYGG	2 cut(s)	289, 339
BtsCI	GGATG	3 cut(s)	17, 616, 870
BtsI	GCAGTG	2 cut(s)	348, 369
BtsIMutI	CAGTG	3 cut(s)	348, 369, 424
Cac8I	GCNNGC	2 cut(s)	278, 376
CfoI	GCGC	5 cut(s)	457, 475, 647, 667, 796
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	2 cut(s)	223, 367
CviAII	CATG	4 cut(s)	193, 340, 433, 991
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	5 cut(s)	401, 467, 509, 881, 943
DpnII	GATC	5 cut(s)	399, 465, 507, 879, 941
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	3 cut(s)	115, 311, 494
EarI	CTCTTC	3 cut(s)	115, 311, 494
EciI	GGCGGA	3 cut(s)	140, 256, 566
Ecl136II	GAGCTC	2 cut(s)	449, 698
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	2 cut(s)	451, 700
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	2 cut(s)	449, 698
Eco57I	CTGAAG	2 cut(s)	292, 707
EcoICRI	GAGCTC	2 cut(s)	449, 698
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	2 cut(s)	200, 395
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	2 cut(s)	451, 700
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	2 cut(s)	130, 385
FaeI	CATG	4 cut(s)	196, 343, 436, 994
FaiI	YATR	7 cut(s)	194, 341, 434, 512, 514, 981, 992
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	4 cut(s)	192, 339, 432, 990
FauI	CCCGC	2 cut(s)	127, 264
FauNDI	CATATG	1 cut(s)	512
FbaI	TGATCA	3 cut(s)	465, 507, 879
Fnu4HI	GCNGC	7 cut(s)	295, 458, 483, 549, 643, 792, 966
FokI	GGATG	3 cut(s)	4, 623, 877
FriOI	GRGCYC	2 cut(s)	451, 700
Fsp4HI	GCNGC	7 cut(s)	295, 458, 483, 549, 643, 792, 966
GlaI	GCGC	5 cut(s)	456, 474, 646, 666, 795
GluI	GCNGC	7 cut(s)	295, 458, 483, 549, 643, 792, 966
GsaI	CCCAGC	1 cut(s)	900
HaeII	RGCGCY	3 cut(s)	458, 668, 797
HaeIII	GGCC	3 cut(s)	324, 490, 806
HapII	CCGG	6 cut(s)	282, 321, 384, 444, 491, 807
HgaI	GACGC	2 cut(s)	223, 367
HhaI	GCGC	5 cut(s)	457, 475, 647, 667, 796
Hin1I	GRCGYC	2 cut(s)	234, 455
Hin1II	CATG	4 cut(s)	196, 343, 436, 994
Hin6I	GCGC	5 cut(s)	455, 473, 645, 665, 794
HinP1I	GCGC	5 cut(s)	455, 473, 645, 665, 794
HinfI	GANTC	2 cut(s)	59, 285
HpaII	CCGG	6 cut(s)	282, 321, 384, 444, 491, 807
HphI	GGTGA	6 cut(s)	43, 74, 238, 587, 682, 863
Hpy166II	GTNNAC	2 cut(s)	781, 955
Hpy188I	TCNGA	3 cut(s)	440, 658, 884
Hpy188III	TCNNGA	3 cut(s)	384, 408, 829
Hpy8I	GTNNAC	2 cut(s)	781, 955
HpyAV	CCTTC	8 cut(s)	36, 225, 526, 667, 682, 730, 841, 886
HpyCH4III	ACNGT	2 cut(s)	419, 925
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	482, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 479, 548
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	2 cut(s)	234, 455
Hsp92II	CATG	4 cut(s)	196, 343, 436, 994
HspAI	GCGC	5 cut(s)	455, 473, 645, 665, 794
KasI	GGCGCC	1 cut(s)	454
Kpn2I	TCCGGA	1 cut(s)	383
Ksp22I	TGATCA	3 cut(s)	465, 507, 879
Kzo9I	GATC	5 cut(s)	399, 465, 507, 879, 941
LmnI	GCTCC	8 cut(s)	146, 317, 440, 446, 594, 695, 811, 821
Lsp1109I	GCAGC	4 cut(s)	306, 494, 629, 952
LweI	GCATC	2 cut(s)	484, 855
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	401, 467, 509, 881, 943
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	5 cut(s)	399, 465, 507, 879, 941
MboII	GAAGA	4 cut(s)	37, 102, 298, 511
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	451, 700
MluCI	AATT	1 cut(s)	652
Mly113I	GGCGCC	1 cut(s)	455
MmeI	TCCRAC	3 cut(s)	418, 588, 799
MroI	TCCGGA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	973
MspI	CCGG	6 cut(s)	282, 321, 384, 444, 491, 807
MspR9I	CCNGG	5 cut(s)	202, 282, 397, 492, 808
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	2 cut(s)	202, 397
MwoI	GCNNNNNNNGC	3 cut(s)	375, 479, 548
NarI	GGCGCC	1 cut(s)	455
NciI	CCSGG	3 cut(s)	282, 492, 808
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	5 cut(s)	399, 465, 507, 879, 941
NlaIII	CATG	4 cut(s)	196, 343, 436, 994
NlaIV	GGNNCC	3 cut(s)	401, 442, 456
NmuCI	GTSAC	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	59, 285
PfoI	TCCNGGA	1 cut(s)	395
PkrI	GCNGC	7 cut(s)	296, 459, 484, 550, 644, 793, 967
PluTI	GGCGCC	1 cut(s)	458
Psp124BI	GAGCTC	2 cut(s)	451, 700
Psp6I	CCWGG	2 cut(s)	200, 395
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	2 cut(s)	200, 395
PspN4I	GGNNCC	3 cut(s)	401, 442, 456
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	399
PvuII	CAGCTG	1 cut(s)	973
SacI	GAGCTC	2 cut(s)	451, 700
SatI	GCNGC	7 cut(s)	295, 458, 483, 549, 643, 792, 966
Sau3AI	GATC	5 cut(s)	399, 465, 507, 879, 941
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	5 cut(s)	202, 282, 397, 492, 808
SduI	GDGCHC	2 cut(s)	451, 700
SfaNI	GCATC	2 cut(s)	484, 855
SfoI	GGCGCC	1 cut(s)	456
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	1 cut(s)	652
SspDI	GGCGCC	1 cut(s)	454
SstI	GAGCTC	2 cut(s)	451, 700
StyD4I	CCNGG	5 cut(s)	200, 280, 395, 490, 806
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	419, 925
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	731, 828
TasI	AATT	1 cut(s)	652
TauI	GCSGC	3 cut(s)	460, 551, 794
TfiI	GAWTC	2 cut(s)	59, 285
TscAI	CASTG	3 cut(s)	355, 376, 424
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	4 cut(s)	294, 482, 642, 965
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	37, 749, 996
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	3 cut(s)	355, 376, 424
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.