Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

51575229 .. 51575891

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG389300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGACGGCACTGCTCTCACTCTCTACCGCACCGCCTGCGTCTCCGGCTTGGCTTCCAGAATTCTCTCCAGAAATGACAGTGAGGTTTTGGTCATGATCGGAGCCGGTGCTCTGGCGCCGCATTTGATCAGGGCGCATCTTGCGGCGAGGCCTGGCTTGAAGAGAGTGATCATATGGAACAGGACGGAGGTGAAGGCGAGAGCATTGGCGGAGGAGATGAGGGGAAGCGTGGGAGGTGATGGGGTTGAGTTTGAGAGCAATGGGAGCTTGGATGAGGCGGTGGCGATGGGGGACATTGTGAGCTGCGCCACGAATTCGGAGGTGGCGCTGGTGAAGGGGGAGAGGCTGAAGGTGGGAGCTCATTTGGACTTGGTTGGATCGTTCCAGCATTCGATGAAGGAGTGTGATGATGAGGCCATAAGGAGAGGGAGGGTGTTTGTGGACAATGAGGCGGCGCTGGTGGAGGCTGGGGAGTTGGTTGGAGCTTTCGAGAGAGGTGTGATCGGGAAGGAGGATGTGTGTGGGATGCTGGTGGAGTTGATCGGAGGAGAGAAGGCTGGGAGGAGAAGTGCAGAGGAGATTACCGTGTTCAAGTCGGTTGGTTCTGCAGTCGTGGACATACTTGCTGCACAGCTGGTGTATGAAACTTACATGAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

220

Amino Acids

23.4

Weight (kDa)

5.24

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCD_Mu_crystall	PF02423	1 - 218	1.9e-41	Ornithine cyclodeaminase/mu-crystallin family
Shikimate_DH	PF01488	17 - 117	9.6e-11	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AciI	CCGC	7 cut(s)	28, 33, 119, 143, 209, 278, 452
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	60, 313
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	160, 592
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	5 cut(s)	267, 303, 359, 485, 634
AluI	AGCT	5 cut(s)	267, 303, 359, 485, 634
Alw21I	GWGCWC	2 cut(s)	112, 361
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	149, 414
ApeKI	GCWGC	2 cut(s)	303, 626
ApoI	RAATTY	2 cut(s)	60, 313
AspLEI	GCGC	5 cut(s)	118, 136, 308, 328, 457
AsuHPI	GGTGA	3 cut(s)	202, 248, 343
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	2 cut(s)	112, 361
BbvI	GCAGC	2 cut(s)	290, 613
BccI	CCATC	2 cut(s)	233, 280
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	153
BclI	TGATCA	2 cut(s)	126, 168
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	3 cut(s)	119, 329, 458
BisI	GCNGC	5 cut(s)	119, 144, 304, 453, 627
BlsI	GCNGC	5 cut(s)	120, 145, 305, 454, 628
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	103, 117
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	145, 516
BpmI	CTGGAG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	116
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 553, 583
Bse118I	RCCGGY	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	277, 520, 531
BseMI	GCAATG	1 cut(s)	265
BseRI	GAGGAG	4 cut(s)	227, 561, 577, 590
BseXI	GCAGC	2 cut(s)	290, 613
BseYI	CCCAGC	2 cut(s)	467, 557
BsgI	GTGCAG	2 cut(s)	591, 612
BshFI	GGCC	2 cut(s)	151, 416
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	112, 361
BsiSI	CCGG	2 cut(s)	45, 105
BslFI	GGGAC	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	151, 416
Bsp1286I	GDGCHC	2 cut(s)	112, 361
Bsp143I	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
BspACI	CCGC	7 cut(s)	28, 33, 119, 143, 209, 278, 452
BspANI	GGCC	2 cut(s)	151, 416
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	103, 117
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
BssNI	GRCGYC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	80, 586
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	277, 520, 531
BstH2I	RGCGCY	3 cut(s)	119, 329, 458
BstHHI	GCGC	5 cut(s)	118, 136, 308, 328, 457
BstKTI	GATC	6 cut(s)	99, 129, 171, 380, 504, 543
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 45, 140, 264
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	290, 613
BsuRI	GGCC	2 cut(s)	151, 416
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	3 cut(s)	277, 520, 531
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 85
Cac8I	GCNNGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	5 cut(s)	118, 136, 308, 328, 457
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	1 cut(s)	28
CviAII	CATG	2 cut(s)	94, 652
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	6 cut(s)	98, 128, 170, 379, 503, 542
DpnII	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	359
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	359
EcoRI	GAATTC	2 cut(s)	60, 313
EcoRII	CCWGG	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	361
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	97, 655
FaiI	YATR	7 cut(s)	95, 173, 175, 419, 620, 642, 653
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	93, 651
FauNDI	CATATG	1 cut(s)	173
FbaI	TGATCA	2 cut(s)	126, 168
Fnu4HI	GCNGC	5 cut(s)	119, 144, 304, 453, 627
FokI	GGATG	3 cut(s)	284, 527, 538
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	5 cut(s)	119, 144, 304, 453, 627
GlaI	GCGC	5 cut(s)	117, 135, 307, 327, 456
GluI	GCNGC	5 cut(s)	119, 144, 304, 453, 627
GsaI	CCCAGC	2 cut(s)	471, 561
GsuI	CTGGAG	1 cut(s)	52
HaeII	RGCGCY	3 cut(s)	119, 329, 458
HaeIII	GGCC	2 cut(s)	151, 416
HapII	CCGG	2 cut(s)	45, 105
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	5 cut(s)	118, 136, 308, 328, 457
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	97, 655
Hin6I	GCGC	5 cut(s)	116, 134, 306, 326, 455
HinP1I	GCGC	5 cut(s)	116, 134, 306, 326, 455
HpaII	CCGG	2 cut(s)	45, 105
HphI	GGTGA	3 cut(s)	202, 248, 343
Hpy166II	GTNNAC	2 cut(s)	442, 616
Hpy188I	TCNGA	3 cut(s)	101, 319, 545
Hpy188III	TCNNGA	5 cut(s)	57, 69, 94, 490, 505
Hpy8I	GTNNAC	2 cut(s)	442, 616
HpyAV	CCTTC	6 cut(s)	187, 328, 343, 391, 502, 547
HpyCH4III	ACNGT	2 cut(s)	80, 586
HpyCH4V	TGCA	3 cut(s)	572, 608, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 45, 140, 264
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	97, 655
HspAI	GCGC	5 cut(s)	116, 134, 306, 326, 455
KasI	GGCGCC	1 cut(s)	115
Ksp22I	TGATCA	2 cut(s)	126, 168
Kzo9I	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
LmnI	GCTCC	4 cut(s)	101, 264, 356, 482
Lsp1109I	GCAGC	2 cut(s)	290, 613
LweI	GCATC	2 cut(s)	145, 516
MalI	GATC	6 cut(s)	98, 128, 170, 379, 503, 542
MboI	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	112, 361
MluCI	AATT	2 cut(s)	60, 313
Mly113I	GGCGCC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	355, 460
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	2 cut(s)	45, 105
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	36, 45, 140, 264
NarI	GGCGCC	1 cut(s)	116
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
NlaIII	CATG	2 cut(s)	97, 655
NlaIV	GGNNCC	2 cut(s)	103, 117
PagI	TCATGA	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	151
PctI	GAATGC	1 cut(s)	388
PkrI	GCNGC	5 cut(s)	120, 145, 305, 454, 628
PluTI	GGCGCC	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	151
PspFI	CCCAGC	2 cut(s)	467, 557
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	103, 117
PstI	CTGCAG	1 cut(s)	610
PvuII	CAGCTG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	361
SatI	GCNGC	5 cut(s)	119, 144, 304, 453, 627
Sau3AI	GATC	6 cut(s)	96, 126, 168, 377, 501, 540
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	2 cut(s)	112, 361
SfaNI	GCATC	2 cut(s)	145, 516
SfcI	CTRYAG	1 cut(s)	606
SfoI	GGCGCC	1 cut(s)	117
Sse9I	AATT	2 cut(s)	60, 313
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	7 cut(s)	28, 33, 119, 143, 209, 278, 452
SspDI	GGCGCC	1 cut(s)	115
SstI	GAGCTC	1 cut(s)	361
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	80, 586
TaqI	TCGA	2 cut(s)	392, 489
TasI	AATT	2 cut(s)	60, 313
TauI	GCSGC	3 cut(s)	121, 146, 455
TscAI	CASTG	2 cut(s)	16, 85
TseI	GCWGC	2 cut(s)	303, 626
TspDTI	ATGAA	2 cut(s)	410, 657
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	16, 85
XapI	RAATTY	2 cut(s)	60, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.