Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008712.1

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Reverse (-)

12730 .. 13059

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008712.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgttgagatttgcgaattgtatacattcagatcatgttttggttggatcgttccagcattcgatgaaggagtgtgatgatgaggccattaggagggggagggtgtttgtggacaatgaggcggcgctggtggaggctggggagttggttggagctttcgagagaggtgtgatcgggaaggaggaggtgtgtgggatgctggtggagttgatcggaggagagaaggctgggaggagaagttccgaggagattaccgtgttcaagtcggtaggatctgcagttgtggacattcttgctgcacagctggtgtatgaaacttacatgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

109

Amino Acids

11.92

Weight (kDa)

5.02

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	55, 280
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	262
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	2 cut(s)	155, 304
AluI	AGCT	2 cut(s)	155, 304
AlwI	GGATC	2 cut(s)	55, 280
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	283
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	2 cut(s)	123, 297
BlsI	GCNGC	2 cut(s)	124, 298
BmsI	GCATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseRI	GAGGAG	4 cut(s)	197, 231, 247, 260
BseXI	GCAGC	1 cut(s)	283
BseYI	CCCAGC	2 cut(s)	137, 227
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	5 cut(s)	31, 47, 171, 210, 272
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	2 cut(s)	55, 280
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	5 cut(s)	31, 47, 171, 210, 272
BssNAI	GTATAC	1 cut(s)	23
Bst1107I	GTATAC	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	5 cut(s)	34, 50, 174, 213, 275
BstMBI	GATC	5 cut(s)	31, 47, 171, 210, 272
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	127
CviAII	CATG	2 cut(s)	35, 322
CviJI	RGCY	5 cut(s)	86, 137, 155, 227, 304
CviKI_1	RGCY	5 cut(s)	86, 137, 155, 227, 304
DpnI	GATC	5 cut(s)	33, 49, 173, 212, 274
DpnII	GATC	5 cut(s)	31, 47, 171, 210, 272
FaeI	CATG	2 cut(s)	38, 325
FaiI	YATR	4 cut(s)	23, 36, 312, 323
FatI	CATG	2 cut(s)	34, 321
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	123, 297
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	123, 297
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	123, 297
GsaI	CCCAGC	2 cut(s)	141, 231
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	38, 325
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
Hpy166II	GTNNAC	3 cut(s)	23, 112, 286
Hpy188I	TCNGA	3 cut(s)	31, 215, 244
Hpy188III	TCNNGA	2 cut(s)	160, 175
Hpy8I	GTNNAC	3 cut(s)	23, 112, 286
HpyAV	CCTTC	3 cut(s)	61, 172, 217
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	278, 299
Hsp92II	CATG	2 cut(s)	38, 325
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	31, 47, 171, 210, 272
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	6 cut(s)	68, 113, 123, 185, 213, 290
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	186
MalI	GATC	5 cut(s)	33, 49, 173, 212, 274
MboI	GATC	5 cut(s)	31, 47, 171, 210, 272
MflI	RGATCY	1 cut(s)	272
MluCI	AATT	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	25, 130
MspA1I	CMGCKG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	58
NdeII	GATC	5 cut(s)	31, 47, 171, 210, 272
NlaIII	CATG	2 cut(s)	38, 325
PctI	GAATGC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	124, 298
PspFI	CCCAGC	2 cut(s)	137, 227
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	304
SatI	GCNGC	2 cut(s)	123, 297
Sau3AI	GATC	5 cut(s)	31, 47, 171, 210, 272
SetI	ASST	4 cut(s)	157, 169, 189, 306
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	276
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	62, 159
TasI	AATT	1 cut(s)	16
TauI	GCSGC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	80, 327
XmiI	GTMKAC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.