Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002395.1

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

20271 .. 21275

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002395.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggcttcttcttcttcttcatccacaaccaccaaaccaatcccagtcttcatcaccaccaattccttacactcaatcctctctcaccaaaccctaatcgaccacttccactcttccctccccaccgtctcctcctccctctgctccccaatccgccaaagctacgccgtttcgcccacctcctccctcctcctaatgccctcctggtcctcctccccctccctcccctacctcggcgtcaagctcgtcacctacttccccctcaactccgccgtcaacttgcccggaatccacggcagctacgtcctcttcagctccacctccggccaaaccctggccaccatggacggcactgctctcactctctaccgcaccgcctgcgtctccggcttggcttccagaattctctccagaaacgacagtgaggttttggtcatgatcggagccggtgctctggcgccgcatttgatcagggcgcatcttgcagcgaggcctggcttgaagagagtgatcatatggaacaggacggaggtgaaggcgagagcattggcggaggagatgaggagaagcgtgggaggtgatggggttgggtttgagagcaatgggagcttggatgaggcggtggcgatgggggacattgtgagctgcgccacgaattccgaggtggcgctggtgaagggggagaggctgaaggtgggagctcatttggacttggttggatcgttccagcattcgatgaaggagtgtgatgatgaggccatcaggagggggagggtgtttgtggacaatgaggcggcgctggtggaggctggggagttggttggagctttcgagagaggtgtgatcgggaaggaggatgtgtgtgggatgctggtggagttgatcggaggagagaaggctgggaggagaagtgcagaggagattaccgtgttcaagtcggtcggatctgcagttgtggacattcttgctgcacagctggtgtatgaaacttacatgaagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

334

Amino Acids

35.46

Weight (kDa)

6.31

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	334
AciI	CCGC	8 cut(s)	154, 270, 370, 375, 461, 551, 620, 794
AclWI	GGATC	2 cut(s)	727, 952
AcoI	YGGCCR	2 cut(s)	325, 336
AcsI	RAATTY	2 cut(s)	402, 655
AcuI	CTGAAG	2 cut(s)	295, 710
AcyI	GRCGYC	2 cut(s)	237, 458
AfiI	CCNNNNNNNGG	3 cut(s)	233, 334, 765
AgsI	TTSAA	2 cut(s)	502, 934
AjnI	CCWGG	3 cut(s)	203, 333, 493
AluBI	AGCT	9 cut(s)	162, 244, 300, 315, 609, 645, 701, 827, 976
AluI	AGCT	9 cut(s)	162, 244, 300, 315, 609, 645, 701, 827, 976
Alw21I	GWGCWC	2 cut(s)	454, 703
Alw26I	GTCTC	2 cut(s)	133, 388
AlwI	GGATC	2 cut(s)	727, 952
AoxI	GGCC	4 cut(s)	325, 336, 491, 756
ApeKI	GCWGC	4 cut(s)	297, 485, 645, 968
ApoI	RAATTY	2 cut(s)	402, 655
AspLEI	GCGC	5 cut(s)	460, 478, 650, 670, 799
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	6 cut(s)	46, 77, 241, 544, 590, 685
AvaII	GGWCC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	454, 703
BbvI	GCAGC	4 cut(s)	309, 497, 632, 955
BccI	CCATC	3 cut(s)	575, 622, 767
BceAI	ACGGC	4 cut(s)	152, 257, 310, 364
BciT130I	CCWGG	3 cut(s)	205, 335, 495
BclI	TGATCA	2 cut(s)	468, 510
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	133, 388
BfmI	CTRYAG	1 cut(s)	948
BfoI	RGCGCY	3 cut(s)	461, 671, 800
BisI	GCNGC	6 cut(s)	298, 461, 486, 646, 795, 969
BlsI	GCNGC	6 cut(s)	299, 462, 487, 647, 796, 970
Bme1390I	CCNGG	4 cut(s)	205, 285, 335, 495
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	445, 459
BmrFI	CCNGG	4 cut(s)	205, 285, 335, 495
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	2 cut(s)	487, 858
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	285
BsaHI	GRCGYC	2 cut(s)	237, 458
BsaJI	CCNNGG	5 cut(s)	232, 292, 333, 342, 660
BsaXI	ACNNNNNCTCC	4 cut(s)	845, 875, 895, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 334, 765
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	3 cut(s)	205, 335, 495
BseDI	CCNNGG	5 cut(s)	232, 292, 333, 342, 660
BseGI	GGATG	4 cut(s)	20, 619, 862, 873
BseLI	CCNNNNNNNGG	3 cut(s)	233, 334, 765
BseMI	GCAATG	1 cut(s)	607
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	4 cut(s)	309, 497, 632, 955
BseYI	CCCAGC	2 cut(s)	809, 899
BsgI	GTGCAG	2 cut(s)	933, 954
Bsh1285I	CGRYCG	1 cut(s)	942
BshFI	GGCC	4 cut(s)	327, 338, 493, 758
BshNI	GGYRCC	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	942
BsiHKAI	GWGCWC	2 cut(s)	454, 703
BsiSI	CCGG	4 cut(s)	285, 324, 387, 447
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	233, 334, 765
BsmAI	GTCTC	2 cut(s)	133, 388
BsmBI	CGTCTC	2 cut(s)	133, 388
BsmFI	GGGAC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	4 cut(s)	327, 338, 493, 758
Bsp1286I	GDGCHC	2 cut(s)	454, 703
Bsp143I	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	8 cut(s)	154, 270, 370, 375, 461, 551, 620, 794
BspANI	GGCC	4 cut(s)	327, 338, 493, 758
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	445, 459
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	2 cut(s)	727, 952
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	5 cut(s)	232, 292, 333, 342, 660
BssMI	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
BssNI	GRCGYC	2 cut(s)	237, 458
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	205, 335, 495
Bst4CI	ACNGT	3 cut(s)	127, 422, 928
Bst6I	CTCTTC	3 cut(s)	118, 314, 497
BstACI	GRCGYC	2 cut(s)	237, 458
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	379
BstDSI	CCRYGG	2 cut(s)	292, 342
BstF5I	GGATG	4 cut(s)	20, 619, 862, 873
BstH2I	RGCGCY	3 cut(s)	461, 671, 800
BstHHI	GCGC	5 cut(s)	460, 478, 650, 670, 799
BstKTI	GATC	7 cut(s)	441, 471, 513, 722, 846, 885, 947
BstMAI	GTCTC	2 cut(s)	133, 388
BstMBI	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
BstMCI	CGRYCG	1 cut(s)	942
BstMWI	GCNNNNNNNGC	4 cut(s)	378, 387, 482, 606
BstNI	CCWGG	3 cut(s)	205, 335, 495
BstSCI	CCNGG	4 cut(s)	203, 283, 333, 493
BstSFI	CTRYAG	1 cut(s)	948
BstV1I	GCAGC	4 cut(s)	309, 497, 632, 955
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	944
BstYI	RGATCY	1 cut(s)	944
BsuRI	GGCC	4 cut(s)	327, 338, 493, 758
BtgI	CCRYGG	2 cut(s)	292, 342
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	4 cut(s)	20, 619, 862, 873
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 427
Cac8I	GCNNGC	1 cut(s)	379
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	5 cut(s)	460, 478, 650, 670, 799
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	2 cut(s)	226, 370
CviAII	CATG	3 cut(s)	343, 436, 994
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	7 cut(s)	440, 470, 512, 721, 845, 884, 946
DpnII	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
EaeI	YGGCCR	2 cut(s)	325, 336
Eam1104I	CTCTTC	3 cut(s)	118, 314, 497
EarI	CTCTTC	3 cut(s)	118, 314, 497
EciI	GGCGGA	3 cut(s)	143, 259, 566
Ecl136II	GAGCTC	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	701
Eco57I	CTGAAG	2 cut(s)	295, 710
EcoICRI	GAGCTC	1 cut(s)	701
EcoRI	GAATTC	2 cut(s)	402, 655
EcoRII	CCWGG	3 cut(s)	203, 333, 493
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	703
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	2 cut(s)	133, 388
FaeI	CATG	3 cut(s)	346, 439, 997
FaiI	YATR	6 cut(s)	344, 437, 515, 517, 984, 995
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	3 cut(s)	342, 435, 993
FauNDI	CATATG	1 cut(s)	515
FbaI	TGATCA	2 cut(s)	468, 510
Fnu4HI	GCNGC	6 cut(s)	298, 461, 486, 646, 795, 969
FokI	GGATG	4 cut(s)	7, 626, 869, 880
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	6 cut(s)	298, 461, 486, 646, 795, 969
GlaI	GCGC	5 cut(s)	459, 477, 649, 669, 798
GluI	GCNGC	6 cut(s)	298, 461, 486, 646, 795, 969
GsaI	CCCAGC	2 cut(s)	813, 903
GsuI	CTGGAG	1 cut(s)	394
HaeII	RGCGCY	3 cut(s)	461, 671, 800
HaeIII	GGCC	4 cut(s)	327, 338, 493, 758
HapII	CCGG	4 cut(s)	285, 324, 387, 447
HgaI	GACGC	2 cut(s)	226, 370
HhaI	GCGC	5 cut(s)	460, 478, 650, 670, 799
Hin1I	GRCGYC	2 cut(s)	237, 458
Hin1II	CATG	3 cut(s)	346, 439, 997
Hin6I	GCGC	5 cut(s)	458, 476, 648, 668, 797
HinP1I	GCGC	5 cut(s)	458, 476, 648, 668, 797
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	4 cut(s)	285, 324, 387, 447
HphI	GGTGA	6 cut(s)	46, 77, 241, 544, 590, 685
Hpy166II	GTNNAC	3 cut(s)	277, 784, 958
Hpy188I	TCNGA	4 cut(s)	443, 661, 887, 944
Hpy188III	TCNNGA	6 cut(s)	399, 411, 436, 763, 832, 847
Hpy8I	GTNNAC	3 cut(s)	277, 784, 958
HpyAV	CCTTC	6 cut(s)	529, 670, 685, 733, 844, 889
HpyCH4III	ACNGT	3 cut(s)	127, 422, 928
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	4 cut(s)	485, 914, 950, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	378, 387, 482, 606
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	2 cut(s)	237, 458
Hsp92II	CATG	3 cut(s)	346, 439, 997
HspAI	GCGC	5 cut(s)	458, 476, 648, 668, 797
KasI	GGCGCC	1 cut(s)	457
Ksp22I	TGATCA	2 cut(s)	468, 510
Kzo9I	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
LmnI	GCTCC	6 cut(s)	149, 320, 443, 606, 698, 824
Lsp1109I	GCAGC	4 cut(s)	309, 497, 632, 955
LweI	GCATC	2 cut(s)	487, 858
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	7 cut(s)	440, 470, 512, 721, 845, 884, 946
MboI	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
MboII	GAAGA	7 cut(s)	3, 6, 9, 40, 105, 301, 514
MflI	RGATCY	1 cut(s)	944
MhlI	GDGCHC	2 cut(s)	454, 703
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	61, 402, 655
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	1 cut(s)	458
MmeI	TCCRAC	3 cut(s)	697, 802, 922
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	976
MspI	CCGG	4 cut(s)	285, 324, 387, 447
MspR9I	CCNGG	4 cut(s)	205, 285, 335, 495
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	3 cut(s)	205, 335, 495
MwoI	GCNNNNNNNGC	4 cut(s)	378, 387, 482, 606
NarI	GGCGCC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
NlaIII	CATG	3 cut(s)	346, 439, 997
NlaIV	GGNNCC	2 cut(s)	445, 459
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	247
PagI	TCATGA	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	6 cut(s)	299, 462, 487, 647, 796, 970
PluTI	GGCGCC	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	703
Psp6I	CCWGG	3 cut(s)	203, 333, 493
PspFI	CCCAGC	2 cut(s)	809, 899
PspGI	CCWGG	3 cut(s)	203, 333, 493
PspN4I	GGNNCC	2 cut(s)	445, 459
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	952
PsuI	RGATCY	1 cut(s)	944
PvuII	CAGCTG	1 cut(s)	976
SacI	GAGCTC	1 cut(s)	703
SatI	GCNGC	6 cut(s)	298, 461, 486, 646, 795, 969
Sau3AI	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	4 cut(s)	205, 285, 335, 495
SduI	GDGCHC	2 cut(s)	454, 703
SfaNI	GCATC	2 cut(s)	487, 858
SfcI	CTRYAG	1 cut(s)	948
SfoI	GGCGCC	1 cut(s)	459
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	3 cut(s)	61, 402, 655
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	8 cut(s)	154, 270, 370, 375, 461, 551, 620, 794
SspDI	GGCGCC	1 cut(s)	457
SstI	GAGCTC	1 cut(s)	703
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	4 cut(s)	203, 283, 333, 493
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	127, 422, 928
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	99, 734, 831
TaqII	GACCGA	1 cut(s)	928
TasI	AATT	3 cut(s)	61, 402, 655
TauI	GCSGC	2 cut(s)	463, 797
TfiI	GAWTC	1 cut(s)	288
TscAI	CASTG	2 cut(s)	358, 427
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	297, 485, 645, 968
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	9, 40, 752, 999
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	358, 427
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	402, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.