Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

28959067 .. 28960059

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTTCTGCCACCATAACATTCCCAATCGTCATCACCACCGAGTCTCTAGACTCCCTCCTCTCTCACCAAACTCTGATAAATCATTTCCAATCTTCACTTCCCACAGTCTCAGCTTCTCTATGTTCCCCAATCCGCCAAAGCTACGACGTTTCACCCTCTTCCTCTCTCCTCCTCATGCCCTCTTGGTCCTCCTCCCCTTCTCTTCCCTACTTAGGCGTCAAGCTCGTGACCTACTTCCCACAAAATTCCGCGCTAAACTTACCCGGGGTGCACGCAAGTTACGTGCTTTTCAGCTCCACAACTGGGCAAACCTTGGCCACCATGGACGGCACCGCACTGACCCTTTACAGGACTTCTTGTGTTTCTGCCTTGGCTTCGAGGATTTTGTCCAGAAACGACAGCCAAGTCCTGGTGATGATCGGTGCAGGTGCTTTGGCACCTCATTTGATCAGAGCCCATCTCGCGGCAAGGCCCAGTTTGAAGAAAGTGATCATATGGAACCGAACAGTGGAAAAGGCCAGAAATTTGGCTGAGAAAATGCAAGAAAGTGTGGCATTTGAAGGGGTCTGTTTCGAGAGCAATGGATGCTTGGATGAGGTGGTTGGGATGGGGGACATCGTCAGCTGCGCGACGAATTCGGAGGTGCCTCTTGTGAAGGGGAAGACGCTGAAGGCAGGGGCGCACTTGGACTTGGTTGGATCTTTCAAGCACTCAATGAAGGAGTGTGATGACGAGGCGATAAGGAGAGGGAGAGTGTTTGTTGATAATGAGGCTGCGTTGGTGGAGGCAGGGGAGCTGGTGGGTGCGTTTGAGAGAGGGGTGATTGGGAAGGCAGATGTTTGTGGGATGCTGGTAGAGTTGATCAAAGAAGACAAGGCTGGGAGAAGAAGCTGTGAGGAGATTACTGTGTTCAAGTCAGTCGGTTCTGCAGTTGTGGATATTCTTGCAGCACAATTGGTCTATGAAACCCACATGCGGCAAAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

331

Amino Acids

35.42

Weight (kDa)

6.25

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	419
AasI	GACNNNNNNGTC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	419
AccB1I	GGYRCC	3 cut(s)	332, 439, 646
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccII	CGCG	3 cut(s)	254, 467, 632
AciI	CCGC	5 cut(s)	136, 252, 336, 467, 979
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	3 cut(s)	247, 526, 637
AcuI	CTGAAG	1 cut(s)	692
AcyI	GRCGYC	1 cut(s)	219
AfiI	CCNNNNNNNGG	7 cut(s)	215, 306, 351, 412, 466, 511, 978
AgsI	TTSAA	4 cut(s)	484, 563, 709, 916
AjnI	CCWGG	1 cut(s)	411
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	7 cut(s)	116, 144, 226, 297, 627, 799, 894
AluI	AGCT	7 cut(s)	116, 144, 226, 297, 627, 799, 894
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	51, 115
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	709
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	318, 473, 519
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	3 cut(s)	627, 776, 950
ApoI	RAATTY	3 cut(s)	247, 526, 637
AspLEI	GCGC	3 cut(s)	256, 632, 685
AspS9I	GGNCC	2 cut(s)	189, 474
AsuC2I	CCSGG	2 cut(s)	267, 268
AsuHPI	GGTGA	5 cut(s)	28, 59, 147, 427, 835
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	3 cut(s)	332, 439, 646
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	671, 879
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	614, 763, 962
BccI	CCATC	2 cut(s)	468, 604
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	413
BclI	TGATCA	3 cut(s)	450, 492, 864
BcnI	CCSGG	2 cut(s)	267, 268
BcoDI	GTCTC	2 cut(s)	51, 115
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	5 cut(s)	468, 628, 777, 951, 980
BlsI	GCNGC	5 cut(s)	469, 629, 778, 952, 981
Bme1390I	CCNGG	3 cut(s)	267, 268, 413
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	189, 474
BmiI	GGNNCC	4 cut(s)	334, 441, 503, 648
BmrFI	CCNGG	3 cut(s)	267, 268, 413
BmrI	ACTGGG	2 cut(s)	315, 471
BmsI	GCATC	2 cut(s)	578, 840
BmuI	ACTGGG	2 cut(s)	315, 471
BpiI	GAAGAC	2 cut(s)	671, 879
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
BpuMI	CCSGG	2 cut(s)	267, 268
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	5 cut(s)	266, 267, 315, 324, 372
Bsc4I	CCNNNNNNNGG	7 cut(s)	215, 306, 351, 412, 466, 511, 978
Bse1I	ACTGG	2 cut(s)	310, 477
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	5 cut(s)	266, 267, 315, 324, 372
BseGI	GGATG	4 cut(s)	593, 601, 615, 855
BseLI	CCNNNNNNNGG	7 cut(s)	215, 306, 351, 412, 466, 511, 978
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	2 cut(s)	126, 525
BseNI	ACTGG	2 cut(s)	310, 477
BseRI	GAGGAG	5 cut(s)	50, 161, 164, 184, 914
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	614, 763, 962
BseYI	CCCAGC	1 cut(s)	881
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	3 cut(s)	254, 467, 632
BshFI	GGCC	3 cut(s)	320, 475, 521
BshNI	GGYRCC	3 cut(s)	332, 439, 646
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	7 cut(s)	215, 306, 351, 412, 466, 511, 978
BsmAI	GTCTC	2 cut(s)	51, 115
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	3 cut(s)	320, 475, 521
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	276, 460
Bsp143I	GATC	5 cut(s)	420, 450, 492, 701, 864
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	5 cut(s)	136, 252, 336, 467, 979
BspANI	GGCC	3 cut(s)	320, 475, 521
BspCNI	CTCAG	2 cut(s)	125, 526
BspFNI	CGCG	3 cut(s)	254, 467, 632
BspLI	GGNNCC	4 cut(s)	334, 441, 503, 648
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	1 cut(s)	709
BspT107I	GGYRCC	3 cut(s)	332, 439, 646
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	310, 477
BssECI	CCNNGG	5 cut(s)	266, 267, 315, 324, 372
BssMI	GATC	5 cut(s)	420, 450, 492, 701, 864
BssNI	GRCGYC	1 cut(s)	219
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	3 cut(s)	315, 324, 372
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	109, 511, 910
Bst6I	CTCTTC	2 cut(s)	166, 210
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	112, 214, 534
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	593, 601, 615, 855
BstFNI	CGCG	3 cut(s)	254, 467, 632
BstHHI	GCGC	3 cut(s)	256, 632, 685
BstKTI	GATC	5 cut(s)	423, 453, 495, 704, 867
BstMAI	GTCTC	2 cut(s)	51, 115
BstMBI	GATC	5 cut(s)	420, 450, 492, 701, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 588
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	3 cut(s)	265, 266, 411
BstSFI	CTRYAG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	3 cut(s)	254, 467, 632
BstV1I	GCAGC	3 cut(s)	614, 763, 962
BstV2I	GAAGAC	2 cut(s)	671, 879
BstX2I	RGATCY	1 cut(s)	701
BstXI	CCANNNNNNTGG	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	3 cut(s)	320, 475, 521
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	4 cut(s)	593, 601, 615, 855
BtsIMutI	CAGTG	2 cut(s)	338, 516
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	3 cut(s)	256, 632, 685
Cfr13I	GGNCC	2 cut(s)	189, 474
Cfr9I	CCCGGG	1 cut(s)	266
CseI	GACGC	2 cut(s)	208, 676
CviAII	CATG	3 cut(s)	178, 325, 976
DdeI	CTNAG	3 cut(s)	112, 214, 534
DpnI	GATC	5 cut(s)	422, 452, 494, 703, 866
DpnII	GATC	5 cut(s)	420, 450, 492, 701, 864
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	166, 210
EarI	CTCTTC	2 cut(s)	166, 210
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	3 cut(s)	315, 324, 372
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	692
Eco88I	CYCGRG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	3 cut(s)	315, 324, 372
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	3 cut(s)	315, 324, 372
FaeI	CATG	3 cut(s)	181, 328, 979
FaiI	YATR	8 cut(s)	17, 124, 179, 326, 497, 499, 966, 977
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	3 cut(s)	177, 324, 975
FauNDI	CATATG	1 cut(s)	497
FbaI	TGATCA	3 cut(s)	450, 492, 864
Fnu4HI	GCNGC	5 cut(s)	468, 628, 777, 951, 980
FokI	GGATG	4 cut(s)	600, 608, 622, 862
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	5 cut(s)	468, 628, 777, 951, 980
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	3 cut(s)	255, 631, 684
GluI	GCNGC	5 cut(s)	468, 628, 777, 951, 980
GsaI	CCCAGC	1 cut(s)	885
HaeIII	GGCC	3 cut(s)	320, 475, 521
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	2 cut(s)	208, 676
HhaI	GCGC	3 cut(s)	256, 632, 685
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	181, 328, 979
Hin6I	GCGC	3 cut(s)	254, 630, 683
HinP1I	GCGC	3 cut(s)	254, 630, 683
HinfI	GANTC	2 cut(s)	44, 53
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	5 cut(s)	28, 59, 147, 427, 835
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	78, 455, 643
Hpy188III	TCNNGA	4 cut(s)	50, 229, 393, 577
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	152, 637
HpyAV	CCTTC	6 cut(s)	210, 557, 652, 667, 715, 826
HpyCH4III	ACNGT	3 cut(s)	109, 511, 910
HpyCH4IV	ACGT	2 cut(s)	150, 285
HpyCH4V	TGCA	5 cut(s)	274, 428, 544, 932, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 588
HpyF3I	CTNAG	3 cut(s)	112, 214, 534
HpySE526I	ACGT	2 cut(s)	150, 285
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	181, 328, 979
HspAI	GCGC	3 cut(s)	254, 630, 683
Ksp22I	TGATCA	3 cut(s)	450, 492, 864
Kzo9I	GATC	5 cut(s)	420, 450, 492, 701, 864
LmnI	GCTCC	2 cut(s)	302, 796
Lsp1109I	GCAGC	3 cut(s)	614, 763, 962
LweI	GCATC	2 cut(s)	578, 840
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	150, 285
MaeIII	GTNAC	2 cut(s)	229, 281
MalI	GATC	5 cut(s)	422, 452, 494, 703, 866
MboI	GATC	5 cut(s)	420, 450, 492, 701, 864
MboII	GAAGA	7 cut(s)	87, 153, 197, 496, 676, 884, 900
MfeI	CAATTG	1 cut(s)	956
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	2 cut(s)	276, 460
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	4 cut(s)	247, 526, 637, 956
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	2 cut(s)	47, 53
MmeI	TCCRAC	1 cut(s)	679
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	627
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	3 cut(s)	267, 268, 413
MunI	CAATTG	1 cut(s)	956
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	3 cut(s)	254, 467, 632
MwoI	GCNNNNNNNGC	2 cut(s)	464, 588
NciI	CCSGG	2 cut(s)	267, 268
NcoI	CCATGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	497
NdeII	GATC	5 cut(s)	420, 450, 492, 701, 864
NlaIII	CATG	3 cut(s)	181, 328, 979
NlaIV	GGNNCC	4 cut(s)	334, 441, 503, 648
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	979
PaqCI	CACCTGC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	469, 629, 778, 952, 981
PleI	GAGTC	2 cut(s)	47, 52
PpsI	GAGTC	2 cut(s)	47, 52
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	4 cut(s)	334, 441, 503, 648
PspPI	GGNCC	2 cut(s)	189, 474
PstI	CTGCAG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	627
SatI	GCNGC	5 cut(s)	468, 628, 777, 951, 980
Sau3AI	GATC	5 cut(s)	420, 450, 492, 701, 864
Sau96I	GGNCC	2 cut(s)	189, 474
SchI	GAGTC	2 cut(s)	47, 53
ScrFI	CCNGG	3 cut(s)	267, 268, 413
SduI	GDGCHC	2 cut(s)	276, 460
SfaNI	GCATC	2 cut(s)	578, 840
SfcI	CTRYAG	1 cut(s)	930
SinI	GGWCC	1 cut(s)	189
SmaI	CCCGGG	1 cut(s)	268
Sse9I	AATT	4 cut(s)	247, 526, 637, 956
SsiI	CCGC	5 cut(s)	136, 252, 336, 467, 979
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	265, 266, 411
StyI	CCWWGG	3 cut(s)	315, 324, 372
TaaI	ACNGT	3 cut(s)	109, 511, 910
TaiI	ACGT	2 cut(s)	153, 288
TaqI	TCGA	2 cut(s)	380, 576
TasI	AATT	4 cut(s)	247, 526, 637, 956
TauI	GCSGC	2 cut(s)	470, 982
TscAI	CASTG	2 cut(s)	345, 516
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	627, 776, 950
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	734, 981
TspMI	CCCGGG	1 cut(s)	266
TspRI	CASTG	2 cut(s)	345, 516
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	412
VneI	GTGCAC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	3 cut(s)	247, 526, 637
XbaI	TCTAGA	1 cut(s)	49
XceI	RCATGY	1 cut(s)	979
XmaI	CCCGGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.