Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002395.1

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

142 .. 563

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002395.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggaaggcattgctctcactctctaccgcatcgcctgcgtctccggcttggcttccaaaattctcttaagaaatgacggtgaggttttggccatgatcggagccggtgctctggcacctcatttgatcagggcacatcttgctgcgaggcctgatttggaggacattgtgagttgcgtcacgaatccggaggtggcgttggtgaagagggagaggctgaaggtgggagctcatttagaattagttggacagttccagcatttaatggagagtgatgatgaggccatttggagaaggctggggaatcggttggagctttcgagagaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

110

Amino Acids

12.11

Weight (kDa)

6.06

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	67
AluBI	AGCT	2 cut(s)	230, 316
AluI	AGCT	2 cut(s)	230, 316
Alw21I	GWGCWC	2 cut(s)	112, 232
Alw26I	GTCTC	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	3 cut(s)	90, 149, 282
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	92, 214
BaeGI	GKGCMC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	112, 232
BbvI	GCAGC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	46
BfrI	CTTAAG	1 cut(s)	67
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	103, 117
BmsI	GCATC	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bse118I	RCCGGY	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	298
BshFI	GGCC	3 cut(s)	92, 151, 284
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	112, 232
BsiSI	CCGG	3 cut(s)	45, 105, 188
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	92, 151, 284
Bsp1286I	GDGCHC	3 cut(s)	112, 136, 232
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	96, 126
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	92, 151, 284
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	103, 117
BspT107I	GGYRCC	1 cut(s)	115
BspTI	CTTAAG	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	2 cut(s)	96, 126
Bst4CI	ACNGT	2 cut(s)	80, 252
Bst6I	CTCTTC	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	67
BstAPI	GCANNNNNTGC	2 cut(s)	36, 140
BstC8I	GCNNGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	99, 129
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	96, 126
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 45, 140
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	92, 151, 284
BtgZI	GCGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	2 cut(s)	28, 166
CviAII	CATG	1 cut(s)	94
DpnI	GATC	2 cut(s)	98, 128
DpnII	GATC	2 cut(s)	96, 126
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FatI	CATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	92, 151, 284
HapII	CCGG	3 cut(s)	45, 105, 188
HgaI	GACGC	2 cut(s)	28, 166
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	184, 304
HpaII	CCGG	3 cut(s)	45, 105, 188
HphI	GGTGA	2 cut(s)	92, 214
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	181, 188, 321
HpyAV	CCTTC	2 cut(s)	214, 288
HpyCH4III	ACNGT	2 cut(s)	80, 252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 45, 140
Hsp92II	CATG	1 cut(s)	97
Kpn2I	TCCGGA	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	96, 126
LmnI	GCTCC	3 cut(s)	101, 227, 313
LpnPI	CCDG	9 cut(s)	49, 58, 98, 115, 118, 165, 201, 269, 284
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	98, 128
MboI	GATC	2 cut(s)	96, 126
MboII	GAAGA	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	112, 136, 232
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	60, 239
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	226, 291
MnlI	CCTC	9 cut(s)	76, 129, 141, 154, 184, 201, 207, 274, 319
Mox20I	TGGCCA	1 cut(s)	92
MroI	TCCGGA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	2 cut(s)	68, 263
Msp20I	TGGCCA	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	67
MspI	CCGG	3 cut(s)	45, 105, 188
MwoI	GCNNNNNNNGC	3 cut(s)	36, 45, 140
NdeII	GATC	2 cut(s)	96, 126
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	103, 117
NmuCI	GTSAC	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	184, 304
PkrI	GCNGC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	103, 117
SacI	GAGCTC	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	68, 263
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	96, 126
SduI	GDGCHC	3 cut(s)	112, 136, 232
SetI	ASST	7 cut(s)	87, 121, 195, 225, 232, 318, 330
SfaNI	GCATC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	2 cut(s)	60, 239
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	80, 252
TaqI	TCGA	1 cut(s)	320
TasI	AATT	2 cut(s)	60, 239
TfiI	GAWTC	2 cut(s)	184, 304
Tru1I	TTAA	2 cut(s)	68, 263
Tru9I	TTAA	2 cut(s)	68, 263
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.