Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Reverse (-)

2949701 .. 2950699

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTTCTTCTTTATCCACCACCACCAAATCAATCCCAGTCTTCATCACCACCGATTCCTTACACACAATCCTCTCTCACCAAACCCTAATCGACCACTTCCACTCTTCCCTCCCCACCGTCTCCTCCTCCCTCTGCTCCCCAATCCGCCAAAGCTACGCCGTTTCGCCCACCTCCTCCCTCCTCCTCATGCCCTCCTGGTCCTCCTCCCCCTCCCTCCCCTACCTCGGAGTCAAGCTCGTCACCTACTTCCCCCTCAACTCCGCCGTCAACTTGCCCGGAATCCACGGCAGCTACGTCCTCTTCAGCTCCACCACCGGCCAAACCCTGGCCACCATGGACGGCACTGCTCTCACTCTCTACCGCACCGCCTGCGTCTCCGGCTTGGCTTCCGGAATTCTCTCCAGAAATGACAGTGAGGTTTTGGTCATGATCGGAGCCGGTGCTCTGGCGCCGCATTTGATCAGGGCGCATCTTGCGGCGAGGCCTGGCTTGAAGAGAGTGATCATATGGAACAGGACGGAGGCGAAGGCGAGAGCATTGGCGGAGGAGATGAGGGGAAGCGTGGGAGGTGATGGGGTTGAGTTTGAGAGCAATGGGAGCTTGGATGAGGCGGTGGCGATGGGGGACATTGTGAGCTGCGCCACGAATTCGGAGGTGGCGCTGGTGAAGGGGGAGAGGCTGAAGGTGGGAGCTCATTTGGACTTGGTTGGATCGTTCCAGCATTCGATGAAGGAGTGTGATGATGAGGCCATCAGGAGGGGGAGGGTGTTTGTGGACAATGAGGCGGCGCTGGTGGAGGCTGGGGAGTTGGTTGGAGCTTTCGAGAGAGGTGTGATCGGGAAGGAGGATGTGTGTGGGATGCTGGTGGAGTTGATCGGAGGAGAGAAGGCTGGGAGGAGAAGTTCCGAGGAGATTACCGTGTTCAAGTCGGTAGGATCTGCAGTTGTGGACATTCTTGCTGCACAGCTGGTGTATGAAACTTACATGAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

333

Amino Acids

35.19

Weight (kDa)

5.73

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCD_Mu_crystall	PF02423	58 - 329	3.5e-51	Ornithine cyclodeaminase/mu-crystallin family
Shikimate_DH	PF01488	130 - 229	2.1e-10	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	392
AciI	CCGC	9 cut(s)	148, 264, 364, 369, 455, 479, 545, 614, 788
AclWI	GGATC	2 cut(s)	721, 946
AcoI	YGGCCR	2 cut(s)	319, 330
AcsI	RAATTY	2 cut(s)	396, 649
AcuI	CTGAAG	2 cut(s)	289, 704
AcyI	GRCGYC	1 cut(s)	452
AfiI	CCNNNNNNNGG	3 cut(s)	227, 328, 759
AgsI	TTSAA	2 cut(s)	496, 928
AjnI	CCWGG	3 cut(s)	197, 327, 487
AloI	GAACNNNNNNTCC	2 cut(s)	889, 921
AluBI	AGCT	9 cut(s)	156, 238, 294, 309, 603, 639, 695, 821, 970
AluI	AGCT	9 cut(s)	156, 238, 294, 309, 603, 639, 695, 821, 970
Alw21I	GWGCWC	2 cut(s)	448, 697
Alw26I	GTCTC	2 cut(s)	127, 382
AlwI	GGATC	2 cut(s)	721, 946
Aor13HI	TCCGGA	1 cut(s)	392
AoxI	GGCC	4 cut(s)	319, 330, 485, 750
ApeKI	GCWGC	3 cut(s)	291, 639, 962
ApoI	RAATTY	2 cut(s)	396, 649
AspLEI	GCGC	5 cut(s)	454, 472, 644, 664, 793
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	5 cut(s)	40, 71, 235, 584, 679
AvaII	GGWCC	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	697
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	448, 697
BbvI	GCAGC	3 cut(s)	303, 626, 949
BccI	CCATC	3 cut(s)	569, 616, 761
BceAI	ACGGC	4 cut(s)	146, 251, 304, 358
BciT130I	CCWGG	3 cut(s)	199, 329, 489
BclI	TGATCA	2 cut(s)	462, 504
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	127, 382
BfmI	CTRYAG	1 cut(s)	942
BfoI	RGCGCY	3 cut(s)	455, 665, 794
BisI	GCNGC	6 cut(s)	292, 455, 480, 640, 789, 963
BlsI	GCNGC	6 cut(s)	293, 456, 481, 641, 790, 964
Bme1390I	CCNGG	4 cut(s)	199, 279, 329, 489
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	439, 453
BmrFI	CCNGG	4 cut(s)	199, 279, 329, 489
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	481, 852
BmuI	ACTGGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpmI	CTGGAG	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	5 cut(s)	226, 286, 327, 336, 909
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	4 cut(s)	839, 869, 889, 919
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 328, 759
Bse118I	RCCGGY	2 cut(s)	317, 440
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	601
BseAI	TCCGGA	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	199, 329, 489
BseDI	CCNNGG	5 cut(s)	226, 286, 327, 336, 909
BseGI	GGATG	3 cut(s)	613, 856, 867
BseLI	CCNNNNNNNGG	3 cut(s)	227, 328, 759
BseMI	GCAATG	1 cut(s)	601
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	303, 626, 949
BseYI	CCCAGC	2 cut(s)	803, 893
BsgI	GTGCAG	1 cut(s)	948
BshFI	GGCC	4 cut(s)	321, 332, 487, 752
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	448, 697
BsiSI	CCGG	5 cut(s)	279, 318, 381, 393, 441
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	227, 328, 759
BsmAI	GTCTC	2 cut(s)	127, 382
BsmBI	CGTCTC	2 cut(s)	127, 382
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	4 cut(s)	321, 332, 487, 752
Bsp1286I	GDGCHC	2 cut(s)	448, 697
Bsp13I	TCCGGA	1 cut(s)	392
Bsp143I	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	9 cut(s)	148, 264, 364, 369, 455, 479, 545, 614, 788
BspANI	GGCC	4 cut(s)	321, 332, 487, 752
BspEI	TCCGGA	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	439, 453
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	2 cut(s)	721, 946
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	601
BsrFI	RCCGGY	2 cut(s)	317, 440
BsrI	ACTGG	1 cut(s)	38
BssAI	RCCGGY	2 cut(s)	317, 440
BssECI	CCNNGG	5 cut(s)	226, 286, 327, 336, 909
BssMI	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
BssNI	GRCGYC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	199, 329, 489
Bst4CI	ACNGT	3 cut(s)	121, 416, 922
Bst6I	CTCTTC	3 cut(s)	112, 308, 491
BstACI	GRCGYC	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	373
BstDSI	CCRYGG	2 cut(s)	286, 336
BstF5I	GGATG	3 cut(s)	613, 856, 867
BstH2I	RGCGCY	3 cut(s)	455, 665, 794
BstHHI	GCGC	5 cut(s)	454, 472, 644, 664, 793
BstKTI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
BstMAI	GTCTC	2 cut(s)	127, 382
BstMBI	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
BstMWI	GCNNNNNNNGC	4 cut(s)	372, 381, 476, 600
BstNI	CCWGG	3 cut(s)	199, 329, 489
BstSCI	CCNGG	4 cut(s)	197, 277, 327, 487
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	3 cut(s)	303, 626, 949
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BsuRI	GGCC	4 cut(s)	321, 332, 487, 752
BtgI	CCRYGG	2 cut(s)	286, 336
BtgZI	GCGATG	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	613, 856, 867
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 421
Cac8I	GCNNGC	1 cut(s)	373
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	5 cut(s)	454, 472, 644, 664, 793
Cfr10I	RCCGGY	2 cut(s)	317, 440
Cfr13I	GGNCC	1 cut(s)	201
CseI	GACGC	1 cut(s)	364
CviAII	CATG	4 cut(s)	190, 337, 430, 988
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	7 cut(s)	434, 464, 506, 715, 839, 878, 940
DpnII	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
EaeI	YGGCCR	2 cut(s)	319, 330
Eam1104I	CTCTTC	3 cut(s)	112, 308, 491
EarI	CTCTTC	3 cut(s)	112, 308, 491
EciI	GGCGGA	3 cut(s)	137, 253, 560
Ecl136II	GAGCTC	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	289, 704
EcoICRI	GAGCTC	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	396, 649
EcoRII	CCWGG	3 cut(s)	197, 327, 487
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	697
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	336
Esp3I	CGTCTC	2 cut(s)	127, 382
FaeI	CATG	4 cut(s)	193, 340, 433, 991
FaiI	YATR	7 cut(s)	191, 338, 431, 509, 511, 978, 989
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	4 cut(s)	189, 336, 429, 987
FauNDI	CATATG	1 cut(s)	509
FbaI	TGATCA	2 cut(s)	462, 504
Fnu4HI	GCNGC	6 cut(s)	292, 455, 480, 640, 789, 963
FokI	GGATG	3 cut(s)	620, 863, 874
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	6 cut(s)	292, 455, 480, 640, 789, 963
GlaI	GCGC	5 cut(s)	453, 471, 643, 663, 792
GluI	GCNGC	6 cut(s)	292, 455, 480, 640, 789, 963
GsaI	CCCAGC	2 cut(s)	807, 897
GsuI	CTGGAG	1 cut(s)	388
HaeII	RGCGCY	3 cut(s)	455, 665, 794
HaeIII	GGCC	4 cut(s)	321, 332, 487, 752
HapII	CCGG	5 cut(s)	279, 318, 381, 393, 441
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	5 cut(s)	454, 472, 644, 664, 793
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	4 cut(s)	193, 340, 433, 991
Hin6I	GCGC	5 cut(s)	452, 470, 642, 662, 791
HinP1I	GCGC	5 cut(s)	452, 470, 642, 662, 791
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	56, 231, 282
HpaII	CCGG	5 cut(s)	279, 318, 381, 393, 441
HphI	GGTGA	5 cut(s)	40, 71, 235, 584, 679
Hpy166II	GTNNAC	3 cut(s)	271, 778, 952
Hpy188I	TCNGA	5 cut(s)	230, 437, 655, 881, 910
Hpy188III	TCNNGA	6 cut(s)	393, 405, 430, 757, 826, 841
Hpy8I	GTNNAC	3 cut(s)	271, 778, 952
HpyAV	CCTTC	6 cut(s)	523, 664, 679, 727, 838, 883
HpyCH4III	ACNGT	3 cut(s)	121, 416, 922
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	944, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	372, 381, 476, 600
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	4 cut(s)	193, 340, 433, 991
HspAI	GCGC	5 cut(s)	452, 470, 642, 662, 791
KasI	GGCGCC	1 cut(s)	451
Kpn2I	TCCGGA	1 cut(s)	392
Ksp22I	TGATCA	2 cut(s)	462, 504
Kzo9I	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
LmnI	GCTCC	6 cut(s)	143, 314, 437, 600, 692, 818
Lsp1109I	GCAGC	3 cut(s)	303, 626, 949
LweI	GCATC	2 cut(s)	481, 852
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	7 cut(s)	434, 464, 506, 715, 839, 878, 940
MboI	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
MboII	GAAGA	4 cut(s)	34, 99, 295, 508
MflI	RGATCY	1 cut(s)	938
MhlI	GDGCHC	2 cut(s)	448, 697
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	2 cut(s)	396, 649
MluNI	TGGCCA	1 cut(s)	332
Mly113I	GGCGCC	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	2 cut(s)	691, 796
Mox20I	TGGCCA	1 cut(s)	332
MroI	TCCGGA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	970
MspI	CCGG	5 cut(s)	279, 318, 381, 393, 441
MspR9I	CCNGG	4 cut(s)	199, 279, 329, 489
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	3 cut(s)	199, 329, 489
MwoI	GCNNNNNNNGC	4 cut(s)	372, 381, 476, 600
NarI	GGCGCC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	509
NdeII	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
NlaIII	CATG	4 cut(s)	193, 340, 433, 991
NlaIV	GGNNCC	2 cut(s)	439, 453
NmuCI	GTSAC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	429
PceI	AGGCCT	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	56, 282
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	6 cut(s)	293, 456, 481, 641, 790, 964
PleI	GAGTC	1 cut(s)	239
PluTI	GGCGCC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	697
Psp6I	CCWGG	3 cut(s)	197, 327, 487
PspFI	CCCAGC	2 cut(s)	803, 893
PspGI	CCWGG	3 cut(s)	197, 327, 487
PspN4I	GGNNCC	2 cut(s)	439, 453
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	946
PsuI	RGATCY	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	970
SacI	GAGCTC	1 cut(s)	697
SatI	GCNGC	6 cut(s)	292, 455, 480, 640, 789, 963
Sau3AI	GATC	7 cut(s)	432, 462, 504, 713, 837, 876, 938
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	4 cut(s)	199, 279, 329, 489
SduI	GDGCHC	2 cut(s)	448, 697
SfaNI	GCATC	2 cut(s)	481, 852
SfcI	CTRYAG	1 cut(s)	942
SfoI	GGCGCC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	2 cut(s)	396, 649
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	9 cut(s)	148, 264, 364, 369, 455, 479, 545, 614, 788
SspDI	GGCGCC	1 cut(s)	451
SstI	GAGCTC	1 cut(s)	697
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	4 cut(s)	197, 277, 327, 487
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	121, 416, 922
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	93, 728, 825
TasI	AATT	2 cut(s)	396, 649
TauI	GCSGC	3 cut(s)	457, 482, 791
TfiI	GAWTC	2 cut(s)	56, 282
TscAI	CASTG	2 cut(s)	352, 421
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	291, 639, 962
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	34, 746, 993
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	2 cut(s)	352, 421
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	2 cut(s)	396, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.