Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008712.1

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Reverse (-)

13073 .. 14074

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008712.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggcttcttcttcatcatccacaaccaccaaaccagtcccagtcttcatcaccactgattccttacactcaatcctctctcaccaaaccctaatcgaccacttccactcttctctccccaccgtctcctcctccctctgctccccaatccgccaaagctacgccgtttcacccacctcctccctcctcctcatgccctcctggtcctcctccccctccctcccctacgtcggcgtcaagctcgtcacctacttcccccacaactccgccgtcaacttgcccggaatccacagcagctacgtcctcttcagctccacctccggccaaaccctggccaccatggacggcgctgctctcactctctaccgcaccgcctgcgtctccggcttggcttccagaattctctccagaaacgacagtgaggttttggtcatgatcggagccggtgctctggcgccgcatttgatcagggcgcatcttgcggcgaggcctggcttgaagagagtgatcatatggaataggacggaggtgaaggcgagagcattggcggaggagatgaggggaagcgtgggaggtgatggggttgagtttgagagcaatgggagcttggatgaggcggtggcgatgggggacattgtgagctgcgccacgaattcagaggtggcgctggtgaagggggagaggctgaaggtgggagctcatttggacttggttggatcgttccagcattcgatgaaggagtgtgatgatgaggccattaggagggggagggtgtttgtggacaatgaggcggcgctggtggaggctggggagttggttggagctttcgagagaggtgtgatcgggaaggaggaggtgtgtgggatgctggtggagttgatcggaggagagaaggctgggaggagaagttccgaggagattaccgtgttcaagtcggtaggatctgcagttgtggacattcttgctgcacagctggtgtatgaaacttacatgaagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

333

Amino Acids

35.37

Weight (kDa)

5.94

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	9 cut(s)	151, 267, 367, 372, 458, 482, 548, 617, 791
AclWI	GGATC	2 cut(s)	724, 949
AcoI	YGGCCR	2 cut(s)	322, 333
AcsI	RAATTY	2 cut(s)	399, 652
AcuI	CTGAAG	2 cut(s)	292, 707
AcyI	GRCGYC	2 cut(s)	234, 455
AfiI	CCNNNNNNNGG	3 cut(s)	230, 331, 762
AgsI	TTSAA	2 cut(s)	499, 931
AjnI	CCWGG	3 cut(s)	200, 330, 490
AloI	GAACNNNNNNTCC	2 cut(s)	892, 924
AluBI	AGCT	9 cut(s)	159, 241, 297, 312, 606, 642, 698, 824, 973
AluI	AGCT	9 cut(s)	159, 241, 297, 312, 606, 642, 698, 824, 973
Alw21I	GWGCWC	2 cut(s)	451, 700
Alw26I	GTCTC	2 cut(s)	130, 385
AlwI	GGATC	2 cut(s)	724, 949
AoxI	GGCC	4 cut(s)	322, 333, 488, 753
ApeKI	GCWGC	4 cut(s)	294, 350, 642, 965
ApoI	RAATTY	2 cut(s)	399, 652
AspLEI	GCGC	6 cut(s)	350, 457, 475, 647, 667, 796
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	7 cut(s)	43, 74, 162, 238, 541, 587, 682
AvaII	GGWCC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	451, 700
BbvI	GCAGC	4 cut(s)	306, 337, 629, 952
BccI	CCATC	2 cut(s)	572, 619
BceAI	ACGGC	3 cut(s)	149, 254, 361
BciT130I	CCWGG	3 cut(s)	202, 332, 492
BclI	TGATCA	2 cut(s)	465, 507
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	130, 385
BfmI	CTRYAG	1 cut(s)	945
BfoI	RGCGCY	4 cut(s)	351, 458, 668, 797
BisI	GCNGC	7 cut(s)	295, 351, 458, 483, 643, 792, 966
BlsI	GCNGC	7 cut(s)	296, 352, 459, 484, 644, 793, 967
Bme1390I	CCNGG	4 cut(s)	202, 282, 332, 492
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	442, 456
BmrFI	CCNGG	4 cut(s)	202, 282, 332, 492
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	484, 855
BmuI	ACTGGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	2 cut(s)	234, 455
BsaJI	CCNNGG	3 cut(s)	330, 339, 912
BsaXI	ACNNNNNCTCC	4 cut(s)	842, 872, 892, 922
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 331, 762
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	35, 41
Bse3DI	GCAATG	1 cut(s)	604
BseBI	CCWGG	3 cut(s)	202, 332, 492
BseDI	CCNNGG	3 cut(s)	330, 339, 912
BseGI	GGATG	3 cut(s)	17, 616, 870
BseLI	CCNNNNNNNGG	3 cut(s)	230, 331, 762
BseMI	GCAATG	1 cut(s)	604
BseNI	ACTGG	2 cut(s)	35, 41
BseXI	GCAGC	4 cut(s)	306, 337, 629, 952
BseYI	CCCAGC	2 cut(s)	806, 896
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	4 cut(s)	324, 335, 490, 755
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	451, 700
BsiSI	CCGG	4 cut(s)	282, 321, 384, 444
BslFI	GGGAC	2 cut(s)	23, 644
BslI	CCNNNNNNNGG	3 cut(s)	230, 331, 762
BsmAI	GTCTC	2 cut(s)	130, 385
BsmBI	CGTCTC	2 cut(s)	130, 385
BsmFI	GGGAC	2 cut(s)	23, 644
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	4 cut(s)	324, 335, 490, 755
Bsp1286I	GDGCHC	2 cut(s)	451, 700
Bsp143I	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	9 cut(s)	151, 267, 367, 372, 458, 482, 548, 617, 791
BspANI	GGCC	4 cut(s)	324, 335, 490, 755
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	442, 456
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	2 cut(s)	724, 949
BspT107I	GGYRCC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	35, 41
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	330, 339, 912
BssMI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
BssNI	GRCGYC	2 cut(s)	234, 455
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	3 cut(s)	202, 332, 492
Bst4CI	ACNGT	3 cut(s)	124, 419, 925
Bst6I	CTCTTC	3 cut(s)	115, 311, 494
BstACI	GRCGYC	2 cut(s)	234, 455
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	376
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	17, 616, 870
BstH2I	RGCGCY	4 cut(s)	351, 458, 668, 797
BstHHI	GCGC	6 cut(s)	350, 457, 475, 647, 667, 796
BstKTI	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
BstMAI	GTCTC	2 cut(s)	130, 385
BstMBI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
BstMWI	GCNNNNNNNGC	4 cut(s)	375, 384, 479, 603
BstNI	CCWGG	3 cut(s)	202, 332, 492
BstSCI	CCNGG	4 cut(s)	200, 280, 330, 490
BstSFI	CTRYAG	1 cut(s)	945
BstV1I	GCAGC	4 cut(s)	306, 337, 629, 952
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuRI	GGCC	4 cut(s)	324, 335, 490, 755
BtgI	CCRYGG	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	638
BtsCI	GGATG	3 cut(s)	17, 616, 870
BtsIMutI	CAGTG	2 cut(s)	54, 424
Cac8I	GCNNGC	1 cut(s)	376
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	6 cut(s)	350, 457, 475, 647, 667, 796
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	2 cut(s)	223, 367
CviAII	CATG	4 cut(s)	193, 340, 433, 991
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	7 cut(s)	437, 467, 509, 718, 842, 881, 943
DpnII	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
EaeI	YGGCCR	2 cut(s)	322, 333
Eam1104I	CTCTTC	3 cut(s)	115, 311, 494
EarI	CTCTTC	3 cut(s)	115, 311, 494
EciI	GGCGGA	3 cut(s)	140, 256, 563
Ecl136II	GAGCTC	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	339
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	698
Eco57I	CTGAAG	2 cut(s)	292, 707
EcoICRI	GAGCTC	1 cut(s)	698
EcoRI	GAATTC	2 cut(s)	399, 652
EcoRII	CCWGG	3 cut(s)	200, 330, 490
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	700
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	2 cut(s)	130, 385
FaeI	CATG	4 cut(s)	196, 343, 436, 994
FaiI	YATR	7 cut(s)	194, 341, 434, 512, 514, 981, 992
FaqI	GGGAC	2 cut(s)	23, 644
FatI	CATG	4 cut(s)	192, 339, 432, 990
FauNDI	CATATG	1 cut(s)	512
FbaI	TGATCA	2 cut(s)	465, 507
Fnu4HI	GCNGC	7 cut(s)	295, 351, 458, 483, 643, 792, 966
FokI	GGATG	3 cut(s)	4, 623, 877
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	7 cut(s)	295, 351, 458, 483, 643, 792, 966
GlaI	GCGC	6 cut(s)	349, 456, 474, 646, 666, 795
GluI	GCNGC	7 cut(s)	295, 351, 458, 483, 643, 792, 966
GsaI	CCCAGC	2 cut(s)	810, 900
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	4 cut(s)	351, 458, 668, 797
HaeIII	GGCC	4 cut(s)	324, 335, 490, 755
HapII	CCGG	4 cut(s)	282, 321, 384, 444
HgaI	GACGC	2 cut(s)	223, 367
HhaI	GCGC	6 cut(s)	350, 457, 475, 647, 667, 796
Hin1I	GRCGYC	2 cut(s)	234, 455
Hin1II	CATG	4 cut(s)	196, 343, 436, 994
Hin6I	GCGC	6 cut(s)	348, 455, 473, 645, 665, 794
HinP1I	GCGC	6 cut(s)	348, 455, 473, 645, 665, 794
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	59, 285
HpaII	CCGG	4 cut(s)	282, 321, 384, 444
HphI	GGTGA	7 cut(s)	43, 74, 162, 238, 541, 587, 682
Hpy166II	GTNNAC	3 cut(s)	274, 781, 955
Hpy188I	TCNGA	4 cut(s)	440, 658, 884, 913
Hpy188III	TCNNGA	5 cut(s)	396, 408, 433, 829, 844
Hpy8I	GTNNAC	3 cut(s)	274, 781, 955
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	6 cut(s)	526, 667, 682, 730, 841, 886
HpyCH4III	ACNGT	3 cut(s)	124, 419, 925
HpyCH4IV	ACGT	2 cut(s)	228, 300
HpyCH4V	TGCA	2 cut(s)	947, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	375, 384, 479, 603
HpySE526I	ACGT	2 cut(s)	228, 300
Hsp92I	GRCGYC	2 cut(s)	234, 455
Hsp92II	CATG	4 cut(s)	196, 343, 436, 994
HspAI	GCGC	6 cut(s)	348, 455, 473, 645, 665, 794
KasI	GGCGCC	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	465, 507
Kzo9I	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
LmnI	GCTCC	6 cut(s)	146, 317, 440, 603, 695, 821
Lsp1109I	GCAGC	4 cut(s)	306, 337, 629, 952
LweI	GCATC	2 cut(s)	484, 855
MaeII	ACGT	2 cut(s)	228, 300
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	7 cut(s)	437, 467, 509, 718, 842, 881, 943
MboI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
MboII	GAAGA	5 cut(s)	3, 37, 102, 298, 511
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	2 cut(s)	451, 700
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	2 cut(s)	399, 652
MluNI	TGGCCA	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	694, 799
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	973
MspI	CCGG	4 cut(s)	282, 321, 384, 444
MspR9I	CCNGG	4 cut(s)	202, 282, 332, 492
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	3 cut(s)	202, 332, 492
MwoI	GCNNNNNNNGC	4 cut(s)	375, 384, 479, 603
NarI	GGCGCC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
NlaIII	CATG	4 cut(s)	196, 343, 436, 994
NlaIV	GGNNCC	2 cut(s)	442, 456
NmuCI	GTSAC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	490
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	59, 285
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	7 cut(s)	296, 352, 459, 484, 644, 793, 967
PluTI	GGCGCC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	700
Psp6I	CCWGG	3 cut(s)	200, 330, 490
PspFI	CCCAGC	2 cut(s)	806, 896
PspGI	CCWGG	3 cut(s)	200, 330, 490
PspN4I	GGNNCC	2 cut(s)	442, 456
PspPI	GGNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	973
SacI	GAGCTC	1 cut(s)	700
SatI	GCNGC	7 cut(s)	295, 351, 458, 483, 643, 792, 966
Sau3AI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	4 cut(s)	202, 282, 332, 492
SduI	GDGCHC	2 cut(s)	451, 700
SfaNI	GCATC	2 cut(s)	484, 855
SfcI	CTRYAG	1 cut(s)	945
SfoI	GGCGCC	1 cut(s)	456
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	399, 652
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	9 cut(s)	151, 267, 367, 372, 458, 482, 548, 617, 791
SspDI	GGCGCC	1 cut(s)	454
SstI	GAGCTC	1 cut(s)	700
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	200, 280, 330, 490
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	124, 419, 925
TaiI	ACGT	2 cut(s)	231, 303
TaqI	TCGA	3 cut(s)	96, 731, 828
TasI	AATT	2 cut(s)	399, 652
TauI	GCSGC	3 cut(s)	460, 485, 794
TfiI	GAWTC	2 cut(s)	59, 285
TscAI	CASTG	2 cut(s)	61, 424
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	4 cut(s)	294, 350, 642, 965
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	37, 749, 996
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	2 cut(s)	61, 424
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	2 cut(s)	399, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.