Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

65344686 .. 65345687

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTTCTTCTTCTTCATCCACAACCACCAAACCAATCCCAGTCTTCATCACCACCGATTCCTTACACTCAATCCTCTCTTACCAAACCCTAATCGACCACTTGCACTCTTCCCTCCCCACCGTCTCCTCCTCCCTCTGCTCCCCAATCCGCCAAAGCTACGCCGTTTCGCCCACCTCCTCCCTCCTCCTCAATGCCCTCCTGGTCCTCCTCCCCCTCCCTCCCCTACCTCGGCGTCAAGCTCGTCACCTACTTCCCCCTCAACTCCGCCTCAACTTGCCCGGAATCCACGGCAGCTACGTCCTCTTCAGCTCCACCACCGGCCAAACCCTGGCCACCATGGACGGCACTGCTCTCACTCTCTACCGCACCGCCTGCGTCTCCGGCTTGGCTTCCAGAATTCTCTCCAGAAACGACAGTGAGGTTTTGGTCATGATCGGAGCCGGTGCTCTGGCGCCGCATTTGATCAGGGCGCATCTTGCAGCGAGGCCTGGCTTGAAGAGAGTGATCATATGGAACAGGACGGAGGTGAAGGCGAGAGCATTGGCGGAGGAGATGAGGGGAAGCGTGGGAGGTGATGGGGTTGAGTTTGAGAGCAATGGGAGCTTGGATGAGGCGGTGGCGATGGGGGACATTGTGAGCTGCGCCACGAGTTCGGAGGTGGCGCTGGTGAAGGGGGAGAGGCTGAAGGTGGGAGCTCATTTGGACCTGGTTGGATCGTTCCAGCATTCGATGAAGGAGTGTGATGATGAGGCCATAAGGAGGGGGAGGGTGTTTGTGGACAATGAGGCGGCGCTGGTGGAGGCTGGGGAGTTGGTTGGAGCTTTCGAGAGAGGTGTGATCGGGAAGGAGGAGGTGTGTGGGATGCTGGTGGAGTTGATCGGAGGAGAGAAGGCTGGGAGGAGAAGTTCCGAGGAGATTACCGTGTTCAAGTCGGTAGGATCTGCAGTTGTGGACATTCTTGCTGCACAGCTGGTGTATGAAACTTACATGAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

333

Amino Acids

35.52

Weight (kDa)

6.32

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCD_Mu_crystall	PF02423	94 - 330	9.4e-46	Ornithine cyclodeaminase/mu-crystallin family
Shikimate_DH	PF01488	130 - 230	1.3e-10	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	8 cut(s)	151, 268, 367, 372, 458, 548, 617, 791
AclWI	GGATC	2 cut(s)	724, 949
AcoI	YGGCCR	2 cut(s)	322, 333
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	292, 707
AcyI	GRCGYC	2 cut(s)	235, 455
AfiI	CCNNNNNNNGG	3 cut(s)	231, 331, 762
AgsI	TTSAA	2 cut(s)	499, 931
AjnI	CCWGG	4 cut(s)	201, 330, 490, 708
AloI	GAACNNNNNNTCC	2 cut(s)	892, 924
AluBI	AGCT	9 cut(s)	159, 242, 297, 312, 606, 642, 698, 824, 973
AluI	AGCT	9 cut(s)	159, 242, 297, 312, 606, 642, 698, 824, 973
Alw21I	GWGCWC	2 cut(s)	451, 700
Alw26I	GTCTC	2 cut(s)	130, 385
AlwI	GGATC	2 cut(s)	724, 949
AoxI	GGCC	4 cut(s)	322, 333, 488, 753
ApeKI	GCWGC	4 cut(s)	294, 482, 642, 965
ApoI	RAATTY	1 cut(s)	399
AspLEI	GCGC	5 cut(s)	457, 475, 647, 667, 796
AspS9I	GGNCC	2 cut(s)	205, 706
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	5 cut(s)	43, 239, 541, 587, 682
AvaII	GGWCC	2 cut(s)	205, 706
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	700
BauI	CACGAG	1 cut(s)	649
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	451, 700
BbvI	GCAGC	4 cut(s)	306, 494, 629, 952
BccI	CCATC	2 cut(s)	572, 619
BceAI	ACGGC	3 cut(s)	149, 307, 361
BciT130I	CCWGG	4 cut(s)	203, 332, 492, 710
BclI	TGATCA	2 cut(s)	465, 507
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	130, 385
BfmI	CTRYAG	1 cut(s)	945
BfoI	RGCGCY	3 cut(s)	458, 668, 797
BisI	GCNGC	6 cut(s)	295, 458, 483, 643, 792, 966
BlsI	GCNGC	6 cut(s)	296, 459, 484, 644, 793, 967
Bme1390I	CCNGG	5 cut(s)	203, 282, 332, 492, 710
Bme18I	GGWCC	2 cut(s)	205, 706
BmgT120I	GGNCC	2 cut(s)	205, 706
BmiI	GGNNCC	2 cut(s)	442, 456
BmrFI	CCNGG	5 cut(s)	203, 282, 332, 492, 710
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	484, 855
BmuI	ACTGGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	2 cut(s)	235, 455
BsaJI	CCNNGG	5 cut(s)	230, 289, 330, 339, 912
BsaXI	ACNNNNNCTCC	4 cut(s)	842, 872, 892, 922
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 331, 762
Bse118I	RCCGGY	2 cut(s)	320, 443
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	604
BseBI	CCWGG	4 cut(s)	203, 332, 492, 710
BseDI	CCNNGG	5 cut(s)	230, 289, 330, 339, 912
BseGI	GGATG	3 cut(s)	17, 616, 870
BseLI	CCNNNNNNNGG	3 cut(s)	231, 331, 762
BseMI	GCAATG	1 cut(s)	604
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	4 cut(s)	306, 494, 629, 952
BseYI	CCCAGC	2 cut(s)	806, 896
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	4 cut(s)	324, 335, 490, 755
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	451, 700
BsiSI	CCGG	4 cut(s)	282, 321, 384, 444
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	3 cut(s)	231, 331, 762
BsmAI	GTCTC	2 cut(s)	130, 385
BsmBI	CGTCTC	2 cut(s)	130, 385
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	4 cut(s)	324, 335, 490, 755
Bsp1286I	GDGCHC	2 cut(s)	451, 700
Bsp143I	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	8 cut(s)	151, 268, 367, 372, 458, 548, 617, 791
BspANI	GGCC	4 cut(s)	324, 335, 490, 755
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	442, 456
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	2 cut(s)	724, 949
BspT107I	GGYRCC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	2 cut(s)	320, 443
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	2 cut(s)	320, 443
BssECI	CCNNGG	5 cut(s)	230, 289, 330, 339, 912
BssMI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
BssNI	GRCGYC	2 cut(s)	235, 455
BssSI	CACGAG	1 cut(s)	649
BssT1I	CCWWGG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	649
Bst2UI	CCWGG	4 cut(s)	203, 332, 492, 710
Bst4CI	ACNGT	3 cut(s)	124, 419, 925
Bst6I	CTCTTC	3 cut(s)	115, 311, 494
BstACI	GRCGYC	2 cut(s)	235, 455
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	376
BstDSI	CCRYGG	2 cut(s)	289, 339
BstF5I	GGATG	3 cut(s)	17, 616, 870
BstH2I	RGCGCY	3 cut(s)	458, 668, 797
BstHHI	GCGC	5 cut(s)	457, 475, 647, 667, 796
BstKTI	GATC	7 cut(s)	438, 468, 510, 719, 843, 882, 944
BstMAI	GTCTC	2 cut(s)	130, 385
BstMBI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
BstMWI	GCNNNNNNNGC	4 cut(s)	375, 384, 479, 603
BstNI	CCWGG	4 cut(s)	203, 332, 492, 710
BstSCI	CCNGG	5 cut(s)	201, 280, 330, 490, 708
BstSFI	CTRYAG	1 cut(s)	945
BstV1I	GCAGC	4 cut(s)	306, 494, 629, 952
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuRI	GGCC	4 cut(s)	324, 335, 490, 755
BtgI	CCRYGG	2 cut(s)	289, 339
BtgZI	GCGATG	1 cut(s)	638
BtsCI	GGATG	3 cut(s)	17, 616, 870
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 424
Cac8I	GCNNGC	1 cut(s)	376
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	5 cut(s)	457, 475, 647, 667, 796
Cfr10I	RCCGGY	2 cut(s)	320, 443
Cfr13I	GGNCC	2 cut(s)	205, 706
CseI	GACGC	2 cut(s)	224, 367
CsiI	ACCWGGT	1 cut(s)	708
CviAII	CATG	3 cut(s)	340, 433, 991
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	7 cut(s)	437, 467, 509, 718, 842, 881, 943
DpnII	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
EaeI	YGGCCR	2 cut(s)	322, 333
Eam1104I	CTCTTC	3 cut(s)	115, 311, 494
EarI	CTCTTC	3 cut(s)	115, 311, 494
EciI	GGCGGA	3 cut(s)	140, 257, 563
Ecl136II	GAGCTC	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	339
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	700
Eco47I	GGWCC	2 cut(s)	205, 706
Eco53kI	GAGCTC	1 cut(s)	698
Eco57I	CTGAAG	2 cut(s)	292, 707
EcoICRI	GAGCTC	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	4 cut(s)	201, 330, 490, 708
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	700
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	2 cut(s)	130, 385
FaeI	CATG	3 cut(s)	343, 436, 994
FaiI	YATR	7 cut(s)	341, 434, 512, 514, 758, 981, 992
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	3 cut(s)	339, 432, 990
FauNDI	CATATG	1 cut(s)	512
FbaI	TGATCA	2 cut(s)	465, 507
Fnu4HI	GCNGC	6 cut(s)	295, 458, 483, 643, 792, 966
FokI	GGATG	3 cut(s)	4, 623, 877
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	6 cut(s)	295, 458, 483, 643, 792, 966
GlaI	GCGC	5 cut(s)	456, 474, 646, 666, 795
GluI	GCNGC	6 cut(s)	295, 458, 483, 643, 792, 966
GsaI	CCCAGC	2 cut(s)	810, 900
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	3 cut(s)	458, 668, 797
HaeIII	GGCC	4 cut(s)	324, 335, 490, 755
HapII	CCGG	4 cut(s)	282, 321, 384, 444
HgaI	GACGC	2 cut(s)	224, 367
HhaI	GCGC	5 cut(s)	457, 475, 647, 667, 796
Hin1I	GRCGYC	2 cut(s)	235, 455
Hin1II	CATG	3 cut(s)	343, 436, 994
Hin6I	GCGC	5 cut(s)	455, 473, 645, 665, 794
HinP1I	GCGC	5 cut(s)	455, 473, 645, 665, 794
HinfI	GANTC	2 cut(s)	59, 285
HpaII	CCGG	4 cut(s)	282, 321, 384, 444
HphI	GGTGA	5 cut(s)	43, 239, 541, 587, 682
Hpy166II	GTNNAC	2 cut(s)	781, 955
Hpy188I	TCNGA	4 cut(s)	440, 658, 884, 913
Hpy188III	TCNNGA	5 cut(s)	396, 408, 433, 829, 844
Hpy8I	GTNNAC	2 cut(s)	781, 955
HpyAV	CCTTC	6 cut(s)	526, 667, 682, 730, 841, 886
HpyCH4III	ACNGT	3 cut(s)	124, 419, 925
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	106, 482, 947, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	375, 384, 479, 603
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	2 cut(s)	235, 455
Hsp92II	CATG	3 cut(s)	343, 436, 994
HspAI	GCGC	5 cut(s)	455, 473, 645, 665, 794
KasI	GGCGCC	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	465, 507
Kzo9I	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
LmnI	GCTCC	6 cut(s)	146, 317, 440, 603, 695, 821
Lsp1109I	GCAGC	4 cut(s)	306, 494, 629, 952
LweI	GCATC	2 cut(s)	484, 855
MabI	ACCWGGT	1 cut(s)	708
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	7 cut(s)	437, 467, 509, 718, 842, 881, 943
MboI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
MboII	GAAGA	6 cut(s)	3, 6, 37, 102, 298, 511
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	2 cut(s)	451, 700
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	1 cut(s)	399
MluNI	TGGCCA	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	694, 799
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	973
MspI	CCGG	4 cut(s)	282, 321, 384, 444
MspR9I	CCNGG	5 cut(s)	203, 282, 332, 492, 710
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	4 cut(s)	203, 332, 492, 710
MwoI	GCNNNNNNNGC	4 cut(s)	375, 384, 479, 603
NarI	GGCGCC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
NlaIII	CATG	3 cut(s)	343, 436, 994
NlaIV	GGNNCC	2 cut(s)	442, 456
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	59, 285
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	296, 459, 484, 644, 793, 967
PluTI	GGCGCC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	700
Psp6I	CCWGG	4 cut(s)	201, 330, 490, 708
PspFI	CCCAGC	2 cut(s)	806, 896
PspGI	CCWGG	4 cut(s)	201, 330, 490, 708
PspN4I	GGNNCC	2 cut(s)	442, 456
PspPI	GGNCC	2 cut(s)	205, 706
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	973
SacI	GAGCTC	1 cut(s)	700
SatI	GCNGC	6 cut(s)	295, 458, 483, 643, 792, 966
Sau3AI	GATC	7 cut(s)	435, 465, 507, 716, 840, 879, 941
Sau96I	GGNCC	2 cut(s)	205, 706
ScrFI	CCNGG	5 cut(s)	203, 282, 332, 492, 710
SduI	GDGCHC	2 cut(s)	451, 700
SexAI	ACCWGGT	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	484, 855
SfcI	CTRYAG	1 cut(s)	945
SfoI	GGCGCC	1 cut(s)	456
SinI	GGWCC	2 cut(s)	205, 706
Sse9I	AATT	1 cut(s)	399
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	8 cut(s)	151, 268, 367, 372, 458, 548, 617, 791
SspDI	GGCGCC	1 cut(s)	454
SstI	GAGCTC	1 cut(s)	700
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	5 cut(s)	201, 280, 330, 490, 708
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	124, 419, 925
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	96, 731, 828
TasI	AATT	1 cut(s)	399
TauI	GCSGC	2 cut(s)	460, 794
TfiI	GAWTC	2 cut(s)	59, 285
TscAI	CASTG	2 cut(s)	355, 424
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	4 cut(s)	294, 482, 642, 965
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	4 cut(s)	6, 37, 749, 996
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	2 cut(s)	355, 424
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	205, 706
XapI	RAATTY	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.