Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Reverse (-)

34405815 .. 34406912

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1279900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATCTCAAACCATTCTTCTCATATCTTTCCCTCTTCTCTCAGACTCACACCAAAGCCTCCCAAGCTCTCAACCCTGCTATCAATGGCTTCCGCCGCCAAATCAACCACCACCACCACCATAACATCCCCAATCACCGTCACTGCCGAGTCTCTACACTCCATCCTCTCTCACCAAACCCTAATCAACCATTTCCAATCTTCCCTACCCGCCGTCTCAGCTTCTCTGCAATCCCCAATCCGCCAAAGCTACGACGTTTCGCCCTCCTCCTCTCTCCTCCTCATGCCCTCCTGGTCCTCCTCCCCTTCTCTCCCCTACTTGGGCGTCAAGCTCGTCACCTACTTCCCCGGAAACTCCACCATAAACTTACCCGGAGTGCACGCAAGTTATGTGCTCTTCAGCTCTGCCACCGGCCAAACCCTCGCCACCATCGACGGCACCGCCCTCACCCTTTACAGAACCTCCTGCGTTTCAGGCTTAGCTTCGAGGATTTTATCCCGAAACGACAGCGGAATTCTGGTTATGATCGGTGCGGGCGCTATGGCGCCGCATTTGATCAGAGCTCATTTAGTGGCACGGCCGAGCTTGAAGAGGGTGATCATATGGAACCGGAACGCGGAGAAGGCGGAAATTTTGGCTGAGAAAATGAGAGAATGTGCGGAGTTTGATGGGGTTTGTTTTGAGAGCGATGGGTGTTTGGATGAGGCGGTTGGGATGGGAGACATTGTGAGCTGCGCCACCAATTCGGAGGCGGCGCTTGTGAAGGGGGAGAAGCTGAAGGCGGGGGCACATTTGGACTTGGTTGGATCTTTCAAGCATTCCATGAAGGAATGTGACGATGAGGCGGTGAGGAGAGGGAGGGTTTTCGTGGACAATGAGGCGGCGCTGGAGGAGGCGGGGGAGCTGGTGGGTGCTTTCGAGAGAGGGGTGATGGAGAAGGCGGATGTTTGCGGAATGTTGGTGGAGTTGATCAACGGAGACAAGGTCGGGAGAACAAGTTGCGAGGAGATTACTGTGTTCAAGTCCGTTGGTTCTGCAGTTGTGGATATTCTTGCAGCTCAGTTGGTGTATGAAACCTATATCCAGCAACAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

366

Amino Acids

38.95

Weight (kDa)

5.94

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCD_Mu_crystall	PF02423	57 - 361	1.7e-52	Ornithine cyclodeaminase/mu-crystallin family
Shikimate_DH	PF01488	160 - 262	8e-10	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	437, 544
AccII	CGCG	1 cut(s)	617
AclWI	GGATC	1 cut(s)	814
AcoI	YGGCCR	2 cut(s)	412, 578
AcsI	RAATTY	2 cut(s)	513, 630
AcuI	CTGAAG	2 cut(s)	382, 797
AcyI	GRCGYC	2 cut(s)	324, 545
AfiI	CCNNNNNNNGG	3 cut(s)	319, 320, 616
AgsI	TTSAA	3 cut(s)	589, 814, 1021
AjnI	CCWGG	1 cut(s)	290
Alw21I	GWGCWC	3 cut(s)	381, 396, 565
Alw26I	GTCTC	4 cut(s)	156, 220, 714, 972
Alw44I	GTGCAC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	814
AoxI	GGCC	2 cut(s)	412, 578
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	732, 1055
ApoI	RAATTY	2 cut(s)	513, 630
AspLEI	GCGC	5 cut(s)	539, 547, 737, 757, 886
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	2 cut(s)	348, 372
AsuHPI	GGTGA	7 cut(s)	127, 164, 328, 439, 607, 859, 940
AvaII	GGWCC	1 cut(s)	294
BaeGI	GKGCMC	2 cut(s)	381, 790
BanI	GGYRCC	2 cut(s)	437, 544
BanII	GRGCYC	1 cut(s)	565
Bbv12I	GWGCWC	3 cut(s)	381, 396, 565
BbvI	GCAGC	2 cut(s)	719, 1067
BccI	CCATC	6 cut(s)	170, 437, 662, 683, 709, 925
BceAI	ACGGC	3 cut(s)	197, 451, 593
BciT130I	CCWGG	1 cut(s)	292
BclI	TGATCA	3 cut(s)	555, 597, 969
BcnI	CCSGG	2 cut(s)	348, 372
BcoDI	GTCTC	4 cut(s)	156, 220, 714, 972
BfmI	CTRYAG	1 cut(s)	1035
BfoI	RGCGCY	4 cut(s)	540, 548, 758, 887
BisI	GCNGC	6 cut(s)	96, 548, 733, 753, 882, 1056
BlpI	GCTNAGC	1 cut(s)	478
BlsI	GCNGC	6 cut(s)	97, 549, 734, 754, 883, 1057
Bme1390I	CCNGG	3 cut(s)	292, 348, 372
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	3 cut(s)	439, 546, 608
BmrFI	CCNGG	3 cut(s)	292, 348, 372
BpmI	CTGGAG	1 cut(s)	908
Bpu1102I	GCTNAGC	1 cut(s)	478
BpuMI	CCSGG	2 cut(s)	348, 372
BsaHI	GRCGYC	2 cut(s)	324, 545
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	609
BsaXI	ACNNNNNCTCC	8 cut(s)	446, 476, 711, 741, 969, 982, 999, 1012
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 320, 616
Bse118I	RCCGGY	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	5 cut(s)	125, 162, 706, 720, 949
BseLI	CCNNNNNNNGG	3 cut(s)	319, 320, 616
BseMII	CTCAG	4 cut(s)	55, 231, 630, 1073
BseRI	GAGGAG	8 cut(s)	256, 259, 266, 269, 289, 865, 905, 1019
BseSI	GKGCMC	2 cut(s)	381, 790
BseX3I	CGGCCG	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	719, 1067
Bsh1236I	CGCG	1 cut(s)	617
Bsh1285I	CGRYCG	1 cut(s)	581
BshFI	GGCC	2 cut(s)	414, 580
BshNI	GGYRCC	2 cut(s)	437, 544
BsiEI	CGRYCG	1 cut(s)	581
BsiHKAI	GWGCWC	3 cut(s)	381, 396, 565
BsiSI	CCGG	4 cut(s)	348, 372, 411, 610
BslI	CCNNNNNNNGG	3 cut(s)	319, 320, 616
BsmAI	GTCTC	4 cut(s)	156, 220, 714, 972
BsmBI	CGTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	414, 580
Bsp1286I	GDGCHC	4 cut(s)	381, 396, 565, 790
Bsp143I	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
Bsp1720I	GCTNAGC	1 cut(s)	478
BspANI	GGCC	2 cut(s)	414, 580
BspCNI	CTCAG	4 cut(s)	54, 230, 631, 1072
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	3 cut(s)	439, 546, 608
BspMAI	CTGCAG	1 cut(s)	1039
BspPI	GGATC	1 cut(s)	814
BspQI	GCTCTTC	1 cut(s)	401
BspT107I	GGYRCC	2 cut(s)	437, 544
BsrFI	RCCGGY	1 cut(s)	410
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
BssNI	GRCGYC	2 cut(s)	324, 545
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	139, 1015
Bst6I	CTCTTC	3 cut(s)	40, 401, 584
BstACI	GRCGYC	2 cut(s)	324, 545
BstC8I	GCNNGC	2 cut(s)	381, 535
BstDEI	CTNAG	5 cut(s)	41, 217, 478, 639, 1059
BstF5I	GGATG	5 cut(s)	125, 162, 706, 720, 949
BstFNI	CGCG	1 cut(s)	617
BstH2I	RGCGCY	4 cut(s)	540, 548, 758, 887
BstHHI	GCGC	5 cut(s)	539, 547, 737, 757, 886
BstKTI	GATC	6 cut(s)	6, 528, 558, 600, 809, 972
BstMAI	GTCTC	4 cut(s)	156, 220, 714, 972
BstMBI	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
BstMCI	CGRYCG	1 cut(s)	581
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 95, 218, 474, 623
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	3 cut(s)	290, 346, 370
BstSFI	CTRYAG	1 cut(s)	1035
BstSLI	GKGCMC	2 cut(s)	381, 790
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	719, 1067
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
BstZI	CGGCCG	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	414, 580
BtgZI	GCGATG	1 cut(s)	702
BtsCI	GGATG	5 cut(s)	125, 162, 706, 720, 949
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	381, 535
CfoI	GCGC	5 cut(s)	539, 547, 737, 757, 886
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	1 cut(s)	313
CviAII	CATG	2 cut(s)	283, 823
DdeI	CTNAG	5 cut(s)	41, 217, 478, 639, 1059
DinI	GGCGCC	1 cut(s)	546
DpnI	GATC	6 cut(s)	5, 527, 557, 599, 808, 971
DpnII	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
EaeI	YGGCCR	2 cut(s)	412, 578
EagI	CGGCCG	1 cut(s)	578
Eam1104I	CTCTTC	3 cut(s)	40, 401, 584
EarI	CTCTTC	3 cut(s)	40, 401, 584
EciI	GGCGGA	4 cut(s)	82, 230, 641, 956
Ecl136II	GAGCTC	1 cut(s)	563
EclXI	CGGCCG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	382, 797
EcoICRI	GAGCTC	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	565
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	2 cut(s)	286, 826
FatI	CATG	2 cut(s)	282, 822
FauI	CCCGC	4 cut(s)	217, 526, 775, 889
FauNDI	CATATG	1 cut(s)	602
FbaI	TGATCA	3 cut(s)	555, 597, 969
Fnu4HI	GCNGC	6 cut(s)	96, 548, 733, 753, 882, 1056
FokI	GGATG	5 cut(s)	112, 149, 713, 727, 956
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	6 cut(s)	96, 548, 733, 753, 882, 1056
GlaI	GCGC	5 cut(s)	538, 546, 736, 756, 885
GluI	GCNGC	6 cut(s)	96, 548, 733, 753, 882, 1056
GsuI	CTGGAG	1 cut(s)	908
HaeII	RGCGCY	4 cut(s)	540, 548, 758, 887
HaeIII	GGCC	2 cut(s)	414, 580
HapII	CCGG	4 cut(s)	348, 372, 411, 610
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	5 cut(s)	539, 547, 737, 757, 886
Hin1I	GRCGYC	2 cut(s)	324, 545
Hin1II	CATG	2 cut(s)	286, 826
Hin6I	GCGC	5 cut(s)	537, 545, 735, 755, 884
HinP1I	GCGC	5 cut(s)	537, 545, 735, 755, 884
HinfI	GANTC	2 cut(s)	45, 149
HpaII	CCGG	4 cut(s)	348, 372, 411, 610
HphI	GGTGA	7 cut(s)	127, 164, 328, 439, 607, 859, 940
Hpy166II	GTNNAC	2 cut(s)	379, 871
Hpy188I	TCNGA	3 cut(s)	44, 560, 748
Hpy188III	TCNNGA	3 cut(s)	498, 919, 988
Hpy8I	GTNNAC	2 cut(s)	379, 871
Hpy99I	CGWCG	2 cut(s)	257, 437
HpyAV	CCTTC	6 cut(s)	315, 616, 757, 772, 820, 931
HpyCH4III	ACNGT	2 cut(s)	139, 1015
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	229, 379, 1037, 1055
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 95, 218, 474, 623
HpyF3I	CTNAG	5 cut(s)	41, 217, 478, 639, 1059
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	2 cut(s)	324, 545
Hsp92II	CATG	2 cut(s)	286, 826
HspAI	GCGC	5 cut(s)	537, 545, 735, 755, 884
KasI	GGCGCC	1 cut(s)	544
Ksp22I	TGATCA	3 cut(s)	555, 597, 969
Kzo9I	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	901
Lsp1109I	GCAGC	2 cut(s)	719, 1067
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	139, 334, 833
MalI	GATC	6 cut(s)	5, 527, 557, 599, 808, 971
MboI	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
MboII	GAAGA	5 cut(s)	9, 27, 192, 388, 601
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	4 cut(s)	381, 396, 565, 790
MluCI	AATT	4 cut(s)	513, 630, 742, 1093
Mly113I	GGCGCC	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	39, 158
MmeI	TCCRAC	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	4 cut(s)	348, 372, 411, 610
MspR9I	CCNGG	3 cut(s)	292, 348, 372
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	5 cut(s)	64, 95, 218, 474, 623
NarI	GGCGCC	1 cut(s)	545
NciI	CCSGG	2 cut(s)	348, 372
NdeI	CATATG	1 cut(s)	602
NdeII	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
NlaIII	CATG	2 cut(s)	286, 826
NlaIV	GGNNCC	3 cut(s)	439, 546, 608
NmeAIII	GCCGAG	2 cut(s)	172, 606
NmuCI	GTSAC	3 cut(s)	139, 334, 833
PciSI	GCTCTTC	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	817
PflFI	GACNNNGTC	1 cut(s)	983
PkrI	GCNGC	6 cut(s)	97, 549, 734, 754, 883, 1057
PleI	GAGTC	2 cut(s)	39, 157
PluTI	GGCGCC	1 cut(s)	548
PpsI	GAGTC	2 cut(s)	39, 157
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	3 cut(s)	439, 546, 608
PspPI	GGNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	1039
PsuI	RGATCY	1 cut(s)	806
PsyI	GACNNNGTC	1 cut(s)	983
SacI	GAGCTC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	401
SatI	GCNGC	6 cut(s)	96, 548, 733, 753, 882, 1056
Sau3AI	GATC	6 cut(s)	3, 525, 555, 597, 806, 969
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	2 cut(s)	39, 158
ScrFI	CCNGG	3 cut(s)	292, 348, 372
SduI	GDGCHC	4 cut(s)	381, 396, 565, 790
SfcI	CTRYAG	1 cut(s)	1035
SfoI	GGCGCC	1 cut(s)	546
SinI	GGWCC	1 cut(s)	294
Sse9I	AATT	4 cut(s)	513, 630, 742, 1093
SspDI	GGCGCC	1 cut(s)	544
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	290, 346, 370
TaaI	ACNGT	2 cut(s)	139, 1015
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	3 cut(s)	432, 485, 918
TasI	AATT	4 cut(s)	513, 630, 742, 1093
TauI	GCSGC	4 cut(s)	98, 550, 755, 884
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	3 cut(s)	139, 334, 833
TseI	GCWGC	2 cut(s)	732, 1055
Tsp45I	GTSAC	3 cut(s)	139, 334, 833
TspDTI	ATGAA	2 cut(s)	839, 1086
TspGWI	ACGGA	2 cut(s)	990, 1015
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	983
VneI	GTGCAC	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	2 cut(s)	513, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.