Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Reverse (-)

22305733 .. 22307569

Gene Structure 1837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGAAGGAAAGCCATGAGGAGAACAACCACACTATCTCAGGTGATTTAACGGCAAAACGGAAACGAGGTCGTCCGAGGAAACAATTGAAGCTGGAATCGAATGAGCACTCTCTTGGTCATTCTCCAAGTTTTAGCAGGAGTCAGCAGCAGTCTCGCCAGAGGAATGACGATGAAGCTATGGTTGGACAGCCGATTAGTGGTGTGATTGAGGCGACATTTGAAGCCGGGTTCTTGCTTTCTGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTGTGGTCTTCAAGCCTGGTCACTGTGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATGTTCCAATGATAAGAAGAAACAGTGATGTGATGCATCATGATGGCTCAGCTAAAAGAGGTCGGAAATCTAGATTCCGGGAGAAGCGTGGTAGTGGTGTTAGAAGCAGAGCATTGGTTCCTGTCCCGATTCAGCCGGCTCATCCAACAATACCAAATAATCTTATTGTTCCCGTTGTGCTTCAGCCTGCCCATCTAGAGAATGGTGGTGAGCGGGTCCCGATCGACCACAGTCCCATGCAGACCGAGACAGGGTCTCAAGCGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTTCTCACACAGGTGATGAATAAAGGTCAAGTCCAGCACACAACACAGTCCGTTGAACCCGAGTCAGATGAGCAAGCTCTGTCCATTGAGCCATTGCAGGCGATACACCCAATCCATCCAGTACATATGCTGAAACCCATGCCGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTGCAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.55

Weight (kDa)

8.01

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	550
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	503, 794
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	3 cut(s)	200, 588, 782
AgsI	TTSAA	4 cut(s)	91, 224, 289, 689
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	4 cut(s)	94, 179, 389, 710
AluI	AGCT	4 cut(s)	94, 179, 389, 710
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	5 cut(s)	159, 578, 597, 623, 830
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	1 cut(s)	853
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	807
AspS9I	GGNCC	1 cut(s)	553
AsuC2I	CCSGG	2 cut(s)	229, 416
AsuHPI	GGTGA	3 cut(s)	56, 557, 658
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	3 cut(s)	374, 537, 756
BceAI	ACGGC	2 cut(s)	69, 631
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	229, 416
BcoDI	GTCTC	5 cut(s)	159, 578, 597, 623, 830
BfaI	CTAG	2 cut(s)	408, 533
BisI	GCNGC	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	3 cut(s)	229, 294, 416
Bme18I	GGWCC	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	3 cut(s)	456, 554, 555
BmrFI	CCNGG	3 cut(s)	229, 294, 416
BmsI	GCATC	2 cut(s)	360, 382
BoxI	GACNNNNGTC	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	579, 834
BpuMI	CCSGG	2 cut(s)	229, 416
BsaI	GGTCTC	2 cut(s)	597, 830
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 588, 782
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	752
Bse3DI	GCAATG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	478, 748
BseLI	CCNNNNNNNGG	3 cut(s)	200, 588, 782
BseMI	GCAATG	1 cut(s)	725
BseMII	CTCAG	2 cut(s)	54, 399
BseNI	ACTGG	1 cut(s)	752
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	839
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	855
BsiEI	CGRYCG	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	3 cut(s)	228, 415, 473
BslFI	GGGAC	3 cut(s)	446, 539, 555
BslI	CCNNNNNNNGG	3 cut(s)	200, 588, 782
BsmAI	GTCTC	5 cut(s)	159, 578, 597, 623, 830
BsmBI	CGTCTC	1 cut(s)	623
BsmFI	GGGAC	3 cut(s)	446, 539, 555
BsnI	GGCC	1 cut(s)	855
Bso31I	GGTCTC	2 cut(s)	597, 830
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	304, 558
Bsp1720I	GCTNAGC	1 cut(s)	385
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	1 cut(s)	855
BspCNI	CTCAG	2 cut(s)	53, 398
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	456, 554, 555
BspPI	GGATC	1 cut(s)	299
BspTNI	GGTCTC	2 cut(s)	597, 830
BsrBI	CCGCTC	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	725
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	752
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	304, 558
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	302, 362, 569, 681
BstC8I	GCNNGC	6 cut(s)	269, 474, 525, 620, 708, 732
BstDEI	CTNAG	3 cut(s)	40, 272, 385
BstF5I	GGATG	2 cut(s)	478, 748
BstKTI	GATC	2 cut(s)	307, 561
BstMAI	GTCTC	5 cut(s)	159, 578, 597, 623, 830
BstMBI	GATC	2 cut(s)	304, 558
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	271
BstPAI	GACNNNNGTC	1 cut(s)	567
BstSCI	CCNGG	3 cut(s)	227, 292, 414
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	855
BtsCI	GGATG	2 cut(s)	478, 748
BtsIMutI	CAGTG	2 cut(s)	298, 367
Cac8I	GCNNGC	6 cut(s)	269, 474, 525, 620, 708, 732
CciI	TCATGA	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	553
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	5 cut(s)	17, 268, 377, 574, 772
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	3 cut(s)	40, 272, 385
DpnI	GATC	2 cut(s)	306, 560
DpnII	GATC	2 cut(s)	304, 558
Eco31I	GGTCTC	2 cut(s)	597, 830
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	503, 794
Eco88I	CYCGRG	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	623
FaeI	CATG	5 cut(s)	20, 271, 380, 577, 775
FaiI	YATR	8 cut(s)	18, 182, 269, 378, 575, 759, 761, 773
FaqI	GGGAC	3 cut(s)	446, 539, 555
FatI	CATG	5 cut(s)	16, 267, 376, 573, 771
FauI	CCCGC	1 cut(s)	543
FauNDI	CATATG	1 cut(s)	759
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	465, 735
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	2 cut(s)	408, 533
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	855
HapII	CCGG	3 cut(s)	228, 415, 473
HgaI	GACGC	1 cut(s)	640
Hin1II	CATG	5 cut(s)	20, 271, 380, 577, 775
HinfI	GANTC	5 cut(s)	98, 142, 411, 466, 695
HpaII	CCGG	3 cut(s)	228, 415, 473
HphI	GGTGA	3 cut(s)	56, 557, 658
Hpy188I	TCNGA	4 cut(s)	78, 262, 402, 700
Hpy188III	TCNNGA	6 cut(s)	335, 377, 408, 463, 533, 556
HpyAV	CCTTC	1 cut(s)	818
HpyCH4III	ACNGT	4 cut(s)	302, 362, 569, 681
HpyCH4V	TGCA	4 cut(s)	373, 577, 730, 820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	3 cut(s)	40, 272, 385
Hsp92II	CATG	5 cut(s)	20, 271, 380, 577, 775
KflI	GGGWCCC	1 cut(s)	553
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	304, 558
LmnI	GCTCC	2 cut(s)	337, 605
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	360, 382
MaeI	CTAG	2 cut(s)	408, 533
MaeIII	GTNAC	3 cut(s)	296, 611, 779
MalI	GATC	2 cut(s)	306, 560
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	2 cut(s)	304, 558
MboII	GAAGA	2 cut(s)	277, 366
MfeI	CAATTG	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	86, 256
MlyI	GAGTC	2 cut(s)	151, 704
MmeI	TCCRAC	3 cut(s)	166, 380, 506
MnlI	CCTC	8 cut(s)	13, 62, 72, 156, 205, 269, 389, 782
Mph1103I	ATGCAT	1 cut(s)	375
MroNI	GCCGGC	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	2 cut(s)	50, 246
MslI	CAYNNNNRTG	2 cut(s)	378, 644
MspI	CCGG	3 cut(s)	228, 415, 473
MspR9I	CCNGG	3 cut(s)	229, 294, 416
MunI	CAATTG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	605
NaeI	GCCGGC	1 cut(s)	474
NciI	CCSGG	2 cut(s)	229, 416
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	2 cut(s)	304, 558
NgoMIV	GCCGGC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	20, 271, 380, 577, 775
NlaIV	GGNNCC	3 cut(s)	456, 554, 555
NmeAIII	GCCGAG	1 cut(s)	801
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	1 cut(s)	271
OliI	CACNNNNGTG	1 cut(s)	644
PaeI	GCATGC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	98, 411, 466
PflFI	GACNNNGTC	1 cut(s)	589
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	150
Ple19I	CGATCG	1 cut(s)	561
PleI	GAGTC	2 cut(s)	150, 703
PpsI	GAGTC	2 cut(s)	150, 703
PpuMI	RGGWCCY	1 cut(s)	553
PshAI	GACNNNNGTC	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	456, 554, 555
PspPI	GGNCC	1 cut(s)	553
PspPPI	RGGWCCY	1 cut(s)	553
PsyI	GACNNNGTC	1 cut(s)	589
PvuI	CGATCG	1 cut(s)	561
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
RseI	CAYNNNNRTG	2 cut(s)	378, 644
SaqAI	TTAA	2 cut(s)	50, 246
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	304, 558
Sau96I	GGNCC	1 cut(s)	553
SchI	GAGTC	2 cut(s)	151, 704
ScrFI	CCNGG	3 cut(s)	229, 294, 416
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	360, 382
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	378, 644
SmlI	CTYRAG	2 cut(s)	594, 849
SmoI	CTYRAG	2 cut(s)	594, 849
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	2 cut(s)	86, 256
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	2 cut(s)	408, 533
StyD4I	CCNGG	3 cut(s)	227, 292, 414
TaaI	ACNGT	4 cut(s)	302, 362, 569, 681
TaqI	TCGA	2 cut(s)	101, 561
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	2 cut(s)	86, 256
TatI	WGTACW	1 cut(s)	754
TfiI	GAWTC	3 cut(s)	98, 411, 466
Tru1I	TTAA	2 cut(s)	50, 246
Tru9I	TTAA	2 cut(s)	50, 246
TscAI	CASTG	2 cut(s)	305, 367
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	189, 665
TspGWI	ACGGA	3 cut(s)	76, 673, 798
TspRI	CASTG	2 cut(s)	305, 367
Tth111I	GACNNNGTC	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	1 cut(s)	256
XbaI	TCTAGA	2 cut(s)	407, 532
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	2 cut(s)	408, 533
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.