Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Forward (+)

31954333 .. 31958465

Gene Structure 4133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1219200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAGCCAATCGGATCAAGGGAACACCCCTGATGGCTCGTCAAGTATCCCCATGAAGCGAAAACGTGGCCGTCCACGGAAATATCCCAAACTAGATCTGAAAGAGAATGCTCATGTGAGAAATGCTCCAAATCTGAACTCGGGGGAAAATGCTGGTACTGGTTTTCCTTCTGCTCCTCCTGGATTTCTAGGGAGGAATGGATACCAGCCCCATCATGGAGCTCCCAGTAATGGTGCAGCTGATGTCATGGTCGGAACAGTAGTTTCAGGTGTCATTGATGCAACATTTGATGGAGGATATCTACTTAGTGTTAGGGTTGGCAACTCTGCCACCACTATGAGGGGTGTTATCTTCAAGCCTGGACATTACGTTCCTGTTTCAGCAGAGAATGACGTGGCCCCAGATGTTCAAATGATAAGGCGAAATGTGATTCCAATTCCAGCTGAGATCTCTCATTTCCATGGTTCGAGTCCTCGTTCTAGAGATGCCATTCGGTCTGTTAATCATGTAGCATCAAAACGCAAACATATGGTTCCAGTGGCACCCCAAACTGCTAGCCCACTACTGTCCAGAGGCAACTTGTTGCCTGTTATACTGCAACCTCGAAATTTATCCGAAGGGGTACCACTCACTGGTTTATCAAATTCTGTTGCACCAGGGGATCCTCCTACCAATGCGCCAATACGCACCATCTGGGTGCCACTCACCAATGAAGTTGTAAACCAATCTTCAGATCTGGCAACTTCAAAAGTTAAGCAGGTTCCATCAGTTCCTCCATCAAATGGGTCGATATCTACCAACCAGATTCCAAGGGTTGGAAATCAATCATTGGTCTTCGAAGGTGGACAAAATGAGAATGGTACGTGTAATCAACCATCAACAGAGACGCTGAAGGCAGAAGCCAAATCACCGAGACTCCCAAATATACCTTTTGAAAAATTGGTTACCGAGGTAGTTAAGAGGATTGATACACCCTCACAAGCCCCTGCACATGCCCCCTCACATTCAACTGAGATGAACATTGAGGGTAGCAAGTCAACTGGCAGTGAGCTGGAGAACGATATGGAACAGCCTTTAGTTATTGAGCCTCTGCAATCCATACAGCCTAAAGACTACTCTATACCACATTCAAAACCACCGGAGGACGATAGAAATGGAAAAATGTCTGAGCTGTTGCAGGTTTTGCAGGAAAGCATGAGGGAAAGCGAGTCAACCACAGATTCGAGAGCGAAGATGGATGAACCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

44.59

Weight (kDa)

7.21

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	748, 1168
Acc65I	GGTACC	1 cut(s)	622
AccB1I	GGYRCC	3 cut(s)	541, 622, 697
AccB7I	CCANNNNNTGG	3 cut(s)	632, 782, 815
AclWI	GGATC	3 cut(s)	21, 656, 669
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	607, 643
AcuI	CTGAAG	2 cut(s)	714, 911
AfaI	GTAC	3 cut(s)	157, 624, 862
AfiI	CCNNNNNNNGG	6 cut(s)	215, 230, 339, 632, 782, 815
AflIII	ACRYGT	1 cut(s)	863
AgsI	TTSAA	6 cut(s)	355, 410, 747, 935, 1008, 1131
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	3 cut(s)	178, 358, 655
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	6 cut(s)	221, 239, 443, 1051, 1171, 1248
AluI	AGCT	6 cut(s)	221, 239, 443, 1051, 1171, 1248
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	878, 907
AlwI	GGATC	3 cut(s)	21, 656, 669
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	2 cut(s)	67, 396
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	607, 643
Asp718I	GGTACC	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	697, 900
AsuII	TTCGAA	1 cut(s)	837
AsuNHI	GCTAGC	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	661
BanI	GGYRCC	3 cut(s)	541, 622, 697
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	826
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	8 cut(s)	26, 219, 284, 698, 772, 784, 883, 1228
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	3 cut(s)	180, 360, 657
BciVI	GTATCC	2 cut(s)	56, 194
BcoDI	GTCTC	2 cut(s)	878, 907
BfaI	CTAG	5 cut(s)	92, 188, 480, 555, 1249
BfuAI	ACCTGC	2 cut(s)	748, 1168
BfuI	GTATCC	2 cut(s)	56, 194
BglII	AGATCT	3 cut(s)	94, 447, 733
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	180, 360, 657
BmeT110I	CYCGRG	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	7 cut(s)	399, 534, 543, 624, 663, 699, 762
BmrFI	CCNGG	3 cut(s)	180, 360, 657
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	268, 475, 521
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	826
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	1073
Bpu14I	TTCGAA	1 cut(s)	837
BsaAI	YACGTR	1 cut(s)	864
BsaJI	CCNNGG	5 cut(s)	74, 460, 656, 809, 948
BsaWI	WCCGGW	1 cut(s)	1138
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	6 cut(s)	215, 230, 339, 632, 782, 815
Bse1I	ACTGG	5 cut(s)	163, 225, 536, 637, 1045
BseBI	CCWGG	3 cut(s)	180, 360, 657
BseDI	CCNNGG	5 cut(s)	74, 460, 656, 809, 948
BseGI	GGATG	1 cut(s)	1243
BseLI	CCNNNNNNNGG	6 cut(s)	215, 230, 339, 632, 782, 815
BseMII	CTCAG	3 cut(s)	435, 1002, 1158
BseNI	ACTGG	5 cut(s)	163, 225, 536, 637, 1045
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	2 cut(s)	255, 972
BshFI	GGCC	2 cut(s)	69, 398
BshNI	GGYRCC	3 cut(s)	541, 622, 697
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	1139
BslI	CCNNNNNNNGG	6 cut(s)	215, 230, 339, 632, 782, 815
BsmAI	GTCTC	2 cut(s)	878, 907
BsmBI	CGTCTC	1 cut(s)	878
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	69, 398
BsoBI	CYCGRG	1 cut(s)	139
Bsp119I	TTCGAA	1 cut(s)	837
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	13, 94, 447, 661, 733
Bsp19I	CCATGG	1 cut(s)	460
BspANI	GGCC	2 cut(s)	69, 398
BspCNI	CTCAG	3 cut(s)	436, 1003, 1159
BspLI	GGNNCC	7 cut(s)	399, 534, 543, 624, 663, 699, 762
BspMI	ACCTGC	2 cut(s)	748, 1168
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	21, 656, 669
BspT104I	TTCGAA	1 cut(s)	837
BspT107I	GGYRCC	3 cut(s)	541, 622, 697
BsrI	ACTGG	5 cut(s)	163, 225, 536, 637, 1045
BssECI	CCNNGG	5 cut(s)	74, 460, 656, 809, 948
BssMI	GATC	5 cut(s)	13, 94, 447, 661, 733
BssT1I	CCWWGG	2 cut(s)	460, 809
Bst2UI	CCWGG	3 cut(s)	180, 360, 657
Bst4CI	ACNGT	2 cut(s)	259, 567
BstAPI	GCANNNNNTGC	1 cut(s)	1183
BstBAI	YACGTR	1 cut(s)	864
BstBI	TTCGAA	1 cut(s)	837
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	305, 444, 1011, 1167
BstDSI	CCRYGG	2 cut(s)	74, 460
BstEII	GGTNACC	1 cut(s)	943
BstF5I	GGATG	1 cut(s)	1243
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	5 cut(s)	16, 97, 450, 664, 736
BstMAI	GTCTC	2 cut(s)	878, 907
BstMBI	GATC	5 cut(s)	13, 94, 447, 661, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	1183
BstNI	CCWGG	3 cut(s)	180, 360, 657
BstNSI	RCATGY	1 cut(s)	995
BstPI	GGTNACC	1 cut(s)	943
BstSCI	CCNGG	3 cut(s)	178, 358, 655
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	826
BstX2I	RGATCY	4 cut(s)	94, 447, 661, 733
BstYI	RGATCY	4 cut(s)	94, 447, 661, 733
BsuI	GTATCC	2 cut(s)	56, 194
BsuRI	GGCC	2 cut(s)	69, 398
BtgI	CCRYGG	2 cut(s)	74, 460
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	1243
BtsI	GCAGTG	1 cut(s)	1051
BtsIMutI	CAGTG	3 cut(s)	543, 630, 1051
BveI	ACCTGC	2 cut(s)	748, 1168
Cac8I	GCNNGC	1 cut(s)	556
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	3 cut(s)	156, 623, 861
CviAII	CATG	8 cut(s)	52, 113, 215, 247, 461, 506, 992, 1195
CviQI	GTAC	3 cut(s)	156, 623, 861
DdeI	CTNAG	4 cut(s)	305, 444, 1011, 1167
DpnI	GATC	5 cut(s)	15, 96, 449, 663, 735
DpnII	GATC	5 cut(s)	13, 94, 447, 661, 733
EaeI	YGGCCR	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	460, 809
Eco24I	GRGCYC	1 cut(s)	223
Eco32I	GATATC	2 cut(s)	299, 792
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	714, 911
Eco88I	CYCGRG	1 cut(s)	139
Eco91I	GGTNACC	1 cut(s)	943
EcoICRI	GAGCTC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	943
EcoRII	CCWGG	3 cut(s)	178, 358, 655
EcoRV	GATATC	2 cut(s)	299, 792
EcoT14I	CCWWGG	2 cut(s)	460, 809
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	460, 809
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	8 cut(s)	55, 116, 218, 250, 464, 509, 995, 1198
FatI	CATG	8 cut(s)	51, 112, 214, 246, 460, 505, 991, 1194
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	5 cut(s)	92, 188, 480, 555, 1249
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	1073
HaeIII	GGCC	2 cut(s)	69, 398
HapII	CCGG	1 cut(s)	1139
HgaI	GACGC	1 cut(s)	895
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	8 cut(s)	55, 116, 218, 250, 464, 509, 995, 1198
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HincII	GTYRAC	2 cut(s)	1038, 1212
HindII	GTYRAC	2 cut(s)	1038, 1212
HinfI	GANTC	6 cut(s)	430, 469, 805, 915, 1208, 1220
HpaII	CCGG	1 cut(s)	1139
HphI	GGTGA	2 cut(s)	697, 900
Hpy166II	GTNNAC	5 cut(s)	74, 721, 845, 1038, 1212
Hpy188I	TCNGA	7 cut(s)	13, 99, 135, 254, 616, 733, 1168
Hpy188III	TCNNGA	3 cut(s)	480, 570, 1224
Hpy8I	GTNNAC	5 cut(s)	74, 721, 845, 1038, 1212
HpyAV	CCTTC	4 cut(s)	177, 611, 833, 886
HpyCH4III	ACNGT	2 cut(s)	259, 567
HpyCH4IV	ACGT	4 cut(s)	64, 369, 393, 863
HpyCH4V	TGCA	8 cut(s)	236, 281, 598, 653, 989, 1093, 1177, 1186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1183
HpyF3I	CTNAG	4 cut(s)	305, 444, 1011, 1167
HpySE526I	ACGT	4 cut(s)	64, 369, 393, 863
Hsp92II	CATG	8 cut(s)	55, 116, 218, 250, 464, 509, 995, 1198
HspAI	GCGC	1 cut(s)	677
KpnI	GGTACC	1 cut(s)	626
Kzo9I	GATC	5 cut(s)	13, 94, 447, 661, 733
LmnI	GCTCC	4 cut(s)	130, 178, 218, 226
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	3 cut(s)	268, 475, 521
MaeI	CTAG	5 cut(s)	92, 188, 480, 555, 1249
MaeII	ACGT	4 cut(s)	64, 369, 393, 863
MaeIII	GTNAC	1 cut(s)	943
MalI	GATC	5 cut(s)	15, 96, 449, 663, 735
MboI	GATC	5 cut(s)	13, 94, 447, 661, 733
MboII	GAAGA	4 cut(s)	343, 720, 826, 1243
MflI	RGATCY	4 cut(s)	94, 447, 661, 733
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	435, 607, 643, 938
MlyI	GAGTC	3 cut(s)	478, 909, 1217
MmeI	TCCRAC	2 cut(s)	232, 796
MseI	TTAA	3 cut(s)	501, 753, 957
MslI	CAYNNNNRTG	3 cut(s)	335, 459, 695
MspA1I	CMGCKG	2 cut(s)	239, 443
MspI	CCGG	1 cut(s)	1139
MspR9I	CCNGG	3 cut(s)	180, 360, 657
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	3 cut(s)	180, 360, 657
MwoI	GCNNNNNNNGC	1 cut(s)	1183
NcoI	CCATGG	1 cut(s)	460
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	5 cut(s)	13, 94, 447, 661, 733
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	8 cut(s)	55, 116, 218, 250, 464, 509, 995, 1198
NlaIV	GGNNCC	7 cut(s)	399, 534, 543, 624, 663, 699, 762
NspI	RCATGY	1 cut(s)	995
NspV	TTCGAA	1 cut(s)	837
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	430, 805, 1220
PflMI	CCANNNNNTGG	3 cut(s)	632, 782, 815
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	3 cut(s)	477, 909, 1216
PpsI	GAGTC	3 cut(s)	477, 909, 1216
Ppu21I	YACGTR	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	178, 358, 655
PspEI	GGTNACC	1 cut(s)	943
PspGI	CCWGG	3 cut(s)	178, 358, 655
PspN4I	GGNNCC	7 cut(s)	399, 534, 543, 624, 663, 699, 762
PspPI	GGNCC	1 cut(s)	397
PsuI	RGATCY	4 cut(s)	94, 447, 661, 733
PvuII	CAGCTG	2 cut(s)	239, 443
RsaI	GTAC	3 cut(s)	157, 624, 862
RsaNI	GTAC	3 cut(s)	156, 623, 861
RseI	CAYNNNNRTG	3 cut(s)	335, 459, 695
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	501, 753, 957
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	5 cut(s)	13, 94, 447, 661, 733
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	3 cut(s)	478, 909, 1217
ScrFI	CCNGG	3 cut(s)	180, 360, 657
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	3 cut(s)	268, 475, 521
SfuI	TTCGAA	1 cut(s)	837
SmiMI	CAYNNNNRTG	3 cut(s)	335, 459, 695
Sse9I	AATT	4 cut(s)	435, 607, 643, 938
SspMI	CTAG	5 cut(s)	92, 188, 480, 555, 1249
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	178, 358, 655
StyI	CCWWGG	2 cut(s)	460, 809
TaaI	ACNGT	2 cut(s)	259, 567
TaiI	ACGT	4 cut(s)	67, 372, 396, 866
TaqI	TCGA	5 cut(s)	467, 604, 788, 837, 1223
TaqII	GACCGA	1 cut(s)	483
TasI	AATT	4 cut(s)	435, 607, 643, 938
TfiI	GAWTC	3 cut(s)	430, 805, 1220
Tru1I	TTAA	3 cut(s)	501, 753, 957
Tru9I	TTAA	3 cut(s)	501, 753, 957
TscAI	CASTG	3 cut(s)	543, 637, 1051
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	68, 726, 1031
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	3 cut(s)	543, 637, 1051
Van91I	CCANNNNNTGG	3 cut(s)	632, 782, 815
XapI	RAATTY	2 cut(s)	607, 643
XbaI	TCTAGA	1 cut(s)	479
XceI	RCATGY	1 cut(s)	995
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	5 cut(s)	92, 188, 480, 555, 1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.