Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Reverse (-)

33572706 .. 33575857

Gene Structure 3152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAAGGAGATCAAGAAAACATTGCTGATGCCTTATCAAACATCCCTGTGAAGCGTAAACGTGGACGCCCACGGAAATATCCAAGACTTGATCCTCAAGAGAATGCTTCTCCTGTGCCCAGGTATCAGAACCTGAACTTGGGAGAGAATGCTGCTGTTCCCCCTCCTGGATTTGTAAGGAGCAACGGAAACCAGGCCCAACAAGCAGCACCAACTAATGGTACAAGTACAACTGATAACATGGTGGGAATGGTTGTTTCTGGTGTTGTTGAAGCATCATTTGATGCCGGCTACCTTCTCAGAGTTAGGGTTGGTAATACTGGTACCACTTTGAGGGGTGTTGTCTTCAAGCCTGGACATTACGCTCCTGTTGTTCCAGAAAATGATGTGGCTCCAGATGTTGAAATGATCCGACGGCATGAAATTGCCCTACCAGTTGAGAACCATTCTTCTGTTCATGGCCATAAACCTCATTCAAGAGATGCTTCCCACCCCGTTAATCATGTGGCTCCGGTGGCTGCACAAAATGTTAATCGAGTAACGTCCAGAGGCAACTTGATGCCTGTTGTGCTCGAACCTTGCAAGGTATCAAATGGCCCGGCACTCACCAGTGAATCAAATCCCGTTGCAACCCAGGCTGCAACCGTAGCAACCTCAAAAGGGAAACAGGTTGTATCAGCTGCTCCATCGAATGGGTGTTCAATTCCCAACGACCAGGCATCAGCAGTTCAAAATCAAATGCTCGGGTCCCAACCTCACACCGGCCATCAGGTGATATATGATGCTAAAATAAATGAGAATGGTCCTACTGATCCACCCTCTGTAGAGGAGCTGCGTAAGACAGAAGCCAAGCAAATGACATTGCCTGAGAATGTGCCCTCAGAATCAACTGAGAGTCACGTAGAGGCTAGTAACTTGGCTACTCAACCCTTAGTCGAGCCCCTGCAAGTAGTAGAGCATAAAGACCATCCTGCATCTGCTTCCAAACCAATGGAGGATGGCAGAAATGGCAAAATGTCCGAGCTATTGCAGGTAAGGACTTTGTTTATAACAGAATATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

37.95

Weight (kDa)

6.36

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1049
Acc36I	ACCTGC	1 cut(s)	1021
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	218, 692
AclWI	GGATC	3 cut(s)	86, 403, 806
AcoI	YGGCCR	2 cut(s)	460, 763
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	3 cut(s)	223, 229, 325
AfiI	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
AgsI	TTSAA	6 cut(s)	272, 349, 404, 477, 702, 731
AjnI	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	680, 832, 1024
AluI	AGCT	3 cut(s)	680, 832, 1024
Alw21I	GWGCWC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	86, 403, 806
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	4 cut(s)	195, 460, 595, 763
ApeKI	GCWGC	6 cut(s)	152, 206, 518, 638, 680, 832
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	4 cut(s)	196, 596, 747, 803
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	598, 784
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	2 cut(s)	747, 803
BaeGI	GKGCMC	2 cut(s)	120, 879
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	942
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
BccI	CCATC	4 cut(s)	694, 774, 975, 992
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
BcnI	CCSGG	1 cut(s)	599
BfaI	CTAG	1 cut(s)	909
BfmI	CTRYAG	1 cut(s)	822
BfuAI	ACCTGC	1 cut(s)	1021
BisI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
BlsI	GCNGC	6 cut(s)	154, 208, 520, 640, 682, 834
Bme1390I	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
Bme18I	GGWCC	2 cut(s)	747, 803
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	4 cut(s)	196, 596, 747, 803
BmiI	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
BmrFI	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
BmsI	GCATC	8 cut(s)	19, 274, 284, 472, 549, 728, 772, 983
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	901
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	71, 119, 633
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
Bse118I	RCCGGY	2 cut(s)	287, 761
Bse1I	ACTGG	3 cut(s)	325, 434, 609
Bse3DI	GCAATG	2 cut(s)	21, 860
BseBI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
BseDI	CCNNGG	3 cut(s)	71, 119, 633
BseGI	GGATG	3 cut(s)	42, 967, 1003
BseLI	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
BseMI	GCAATG	2 cut(s)	21, 860
BseMII	CTCAG	4 cut(s)	313, 858, 882, 894
BseNI	ACTGG	3 cut(s)	325, 434, 609
BseRI	GAGGAG	1 cut(s)	842
BseSI	GKGCMC	2 cut(s)	120, 879
BseXI	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	4 cut(s)	197, 462, 597, 765
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	4 cut(s)	288, 512, 599, 762
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	2 cut(s)	109, 154
BsnI	GGCC	4 cut(s)	197, 462, 597, 765
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	4 cut(s)	120, 573, 879, 942
Bsp143I	GATC	4 cut(s)	10, 91, 408, 811
BspANI	GGCC	4 cut(s)	197, 462, 597, 765
BspCNI	CTCAG	4 cut(s)	312, 859, 883, 893
BspLI	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
BspMI	ACCTGC	1 cut(s)	1021
BspPI	GGATC	3 cut(s)	86, 403, 806
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	21, 860
BsrFI	RCCGGY	2 cut(s)	287, 761
BsrI	ACTGG	3 cut(s)	325, 434, 609
BssAI	RCCGGY	2 cut(s)	287, 761
BssECI	CCNNGG	3 cut(s)	71, 119, 633
BssMI	GATC	4 cut(s)	10, 91, 408, 811
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
Bst4CI	ACNGT	1 cut(s)	646
BstACI	GRCGYC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	901
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	5 cut(s)	299, 867, 880, 891, 931
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	42, 967, 1003
BstKTI	GATC	4 cut(s)	13, 94, 411, 814
BstMBI	GATC	4 cut(s)	10, 91, 408, 811
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 515, 568, 635, 647, 1008
BstNI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
BstSCI	CCNGG	7 cut(s)	119, 166, 192, 352, 597, 633, 714
BstSFI	CTRYAG	1 cut(s)	822
BstSLI	GKGCMC	2 cut(s)	120, 879
BstV1I	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
BstV2I	GAAGAC	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	197, 462, 597, 765
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	42, 967, 1003
BtsIMutI	CAGTG	1 cut(s)	616
BveI	ACCTGC	1 cut(s)	1021
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	287, 761
Cfr13I	GGNCC	4 cut(s)	196, 596, 747, 803
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	222, 228, 324
CviAII	CATG	4 cut(s)	241, 419, 458, 503
CviQI	GTAC	3 cut(s)	222, 228, 324
DdeI	CTNAG	5 cut(s)	299, 867, 880, 891, 931
DpnI	GATC	4 cut(s)	12, 93, 410, 813
DpnII	GATC	4 cut(s)	10, 91, 408, 811
EaeI	YGGCCR	2 cut(s)	460, 763
Eco24I	GRGCYC	1 cut(s)	942
Eco47I	GGWCC	2 cut(s)	747, 803
Eco88I	CYCGRG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	747
EcoRII	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
EcoT38I	GRGCYC	1 cut(s)	942
FaeI	CATG	4 cut(s)	244, 422, 461, 506
FaiI	YATR	9 cut(s)	242, 420, 459, 465, 504, 778, 780, 960, 1049
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	4 cut(s)	240, 418, 457, 502
Fnu4HI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
FokI	GGATG	3 cut(s)	29, 954, 1010
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
FspBI	CTAG	1 cut(s)	909
GluI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	4 cut(s)	197, 462, 597, 765
HapII	CCGG	4 cut(s)	288, 512, 599, 762
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	244, 422, 461, 506
HinfI	GANTC	3 cut(s)	614, 884, 895
HpaII	CCGG	4 cut(s)	288, 512, 599, 762
HphI	GGTGA	2 cut(s)	598, 784
Hpy166II	GTNNAC	2 cut(s)	59, 65
Hpy188I	TCNGA	5 cut(s)	129, 302, 413, 883, 1021
Hpy188III	TCNNGA	6 cut(s)	14, 98, 377, 395, 477, 546
Hpy8I	GTNNAC	2 cut(s)	59, 65
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	3 cut(s)	61, 542, 900
HpyCH4V	TGCA	8 cut(s)	4, 521, 582, 629, 641, 946, 974, 1030
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 515, 568, 635, 647, 1008
HpyF3I	CTNAG	5 cut(s)	299, 867, 880, 891, 931
HpySE526I	ACGT	3 cut(s)	61, 542, 900
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	244, 422, 461, 506
KflI	GGGWCCC	1 cut(s)	747
KpnI	GGTACC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	10, 91, 408, 811
LmnI	GCTCC	6 cut(s)	180, 370, 397, 514, 688, 829
Lsp1109I	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
LweI	GCATC	8 cut(s)	19, 274, 284, 472, 549, 728, 772, 983
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	3 cut(s)	61, 542, 900
MaeIII	GTNAC	3 cut(s)	538, 896, 911
MalI	GATC	4 cut(s)	12, 93, 410, 813
MboI	GATC	4 cut(s)	10, 91, 408, 811
MboII	GAAGA	2 cut(s)	337, 441
MhlI	GDGCHC	4 cut(s)	120, 573, 879, 942
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	2 cut(s)	423, 702
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	904
MmeI	TCCRAC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	462
MroNI	GCCGGC	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	2 cut(s)	498, 531
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	4 cut(s)	288, 512, 599, 762
MspR9I	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
Mva1269I	GAATGC	2 cut(s)	109, 154
MvaI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
MwoI	GCNNNNNNNGC	6 cut(s)	203, 515, 568, 635, 647, 1008
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	4 cut(s)	10, 91, 408, 811
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	4 cut(s)	244, 422, 461, 506
NlaIV	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
NmuCI	GTSAC	1 cut(s)	896
PctI	GAATGC	2 cut(s)	109, 154
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	614, 884
PflMI	CCANNNNNTGG	2 cut(s)	218, 692
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	6 cut(s)	154, 208, 520, 640, 682, 834
PleI	GAGTC	1 cut(s)	903
PpsI	GAGTC	1 cut(s)	903
Ppu21I	YACGTR	1 cut(s)	901
PpuMI	RGGWCCY	1 cut(s)	747
PsiI	TTATAA	1 cut(s)	1049
Psp5II	RGGWCCY	1 cut(s)	747
Psp6I	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
PspGI	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
PspN4I	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
PspPI	GGNCC	4 cut(s)	196, 596, 747, 803
PspPPI	RGGWCCY	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	223, 229, 325
RsaNI	GTAC	3 cut(s)	222, 228, 324
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	498, 531
SatI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
Sau3AI	GATC	4 cut(s)	10, 91, 408, 811
Sau96I	GGNCC	4 cut(s)	196, 596, 747, 803
SchI	GAGTC	1 cut(s)	904
ScrFI	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
SduI	GDGCHC	4 cut(s)	120, 573, 879, 942
SfaNI	GCATC	8 cut(s)	19, 274, 284, 472, 549, 728, 772, 983
SfcI	CTRYAG	1 cut(s)	822
SinI	GGWCC	2 cut(s)	747, 803
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	423, 702
SspMI	CTAG	1 cut(s)	909
StyD4I	CCNGG	7 cut(s)	119, 166, 192, 352, 597, 633, 714
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	3 cut(s)	64, 545, 903
TaqI	TCGA	4 cut(s)	535, 573, 689, 936
TasI	AATT	2 cut(s)	423, 702
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	614, 884
Tru1I	TTAA	2 cut(s)	498, 531
Tru9I	TTAA	2 cut(s)	498, 531
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	6 cut(s)	152, 206, 518, 638, 680, 832
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	2 cut(s)	435, 446
TspGWI	ACGGA	2 cut(s)	88, 201
TspRI	CASTG	1 cut(s)	616
Van91I	CCANNNNNTGG	2 cut(s)	218, 692
VpaK11BI	GGWCC	2 cut(s)	747, 803
XspI	CTAG	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.