Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Reverse (-)

15550370 .. 15553728

Gene Structure 3359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCAAGCAGATCAAGAAAACATTGCTGATGGCTTATCAAACATCCCTGTGAAGCGTAAACGTGGACGCCCACGGAAATATCCAAGACTTGATTCTCAAGTGAATGCTGCTCCTGTGCCCAGGTATCAGAACCTAAACTTGCGGGAGAATGCTGCTGTTCCCCCTCCTGGATTCGTAAGGAGCAATGGAAACCAGGCCCAACAAGCAGCACCAACTAATGGTACAAGTACAACTGATAACTTGGTGGGAATGGCGGTTTCTGGTGTTGTTGAAGCATCATTTGACGCCGGCTACCTTCTCAGAGTTAGGGTTGGTAATACTGGCACCACTTTGAGGGGTATTGTCTTCAAGCCTGGACATTATGCTCCTGTTGTACCAGAAAATGATGTGGCTCCAGATGTTGAAATGATCCGACGGCATGAAGTTCCCATCCCAGTTGAGAACCATTCTGCTGTTCATGTCCATAAACCCCATTCTAGAGATGTTTCCCGCCCTGTTAATCATGTAGCTTCAGAAGGCCGACAGATGACTCCAGTGGCTGCACAAACTGTTAATCAAGTAATGTCCAGAGGCAACTTGATGCCTGTTGTGCTAGAACCTTGCAAGGCATCAAATGGGGTGGCACTCACCAGTGAATCGAGTCCTGTTGCACCCCAGGCTGCAACCATAGCAACCTCTAAAGGGAAAGAGGTTGTATCAGCTGCTCCATCAAATGGGTGTTCAATTCCCAACGACCAGGCGTCATTAGTTCAAAATCAAATGCTTGGATCCCAACCTCACACTAGCAATCAGGTAATGCATGATGTTAAAATGAATGAGAATGGTCCTATTGATCCACTCTCTGTAGAGGAGTTGCCTAAGCCAGAAGCCAAGCAAATGAGATTACCTGAGAATGTCCCCTCAGAATCAGCTGAGAGTCACCTAGAGGCTAGTAACTTAACTACTCAACCCTTAGCCGTTGAGCCCCTCCAGTCAGTAGAGCCTGAATACCATCCCACATCTACTTCCCAACCAATGGAGGATGTCAGAAATGACAAAATGTCCGAGCTATTGCAGGTTTTGCAGGAAAGCATGAAGGAGAGGGTGAAGGACCAAACTGACAAACTGTTTGGAGATGGACAGAATGAGGATTCAAGCACACCTTCACAGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

41.52

Weight (kDa)

5.7

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1045
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	3 cut(s)	218, 713, 1015
AciI	CCGC	3 cut(s)	142, 254, 490
AclWI	GGATC	4 cut(s)	403, 762, 775, 827
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	3 cut(s)	67, 285, 740
AfaI	GTAC	3 cut(s)	223, 229, 375
AfiI	CCNNNNNNNGG	6 cut(s)	167, 218, 333, 681, 713, 1015
AgsI	TTSAA	6 cut(s)	272, 349, 404, 723, 752, 1134
AhdI	GACNNNNNGTC	2 cut(s)	739, 1039
AjnI	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	4 cut(s)	509, 701, 911, 1048
AluI	AGCT	4 cut(s)	509, 701, 911, 1048
AlwI	GGATC	4 cut(s)	403, 762, 775, 827
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	2 cut(s)	195, 517
ApeKI	GCWGC	6 cut(s)	107, 152, 206, 539, 659, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	1091, 1123
AspS9I	GGNCC	3 cut(s)	196, 824, 1090
AsuHPI	GGTGA	3 cut(s)	619, 911, 1096
AvaII	GGWCC	2 cut(s)	824, 1090
BaeGI	GKGCMC	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	767
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	6 cut(s)	94, 139, 218, 526, 646, 688
BccI	CCATC	5 cut(s)	23, 437, 715, 999, 1109
BceAI	ACGGC	2 cut(s)	431, 941
BciT130I	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BfaI	CTAG	5 cut(s)	477, 593, 783, 923, 930
BfmI	CTRYAG	1 cut(s)	843
BfuAI	ACCTGC	1 cut(s)	1045
BisI	GCNGC	6 cut(s)	108, 153, 207, 540, 660, 702
BlsI	GCNGC	6 cut(s)	109, 154, 208, 541, 661, 703
Bme1390I	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
Bme18I	GGWCC	2 cut(s)	824, 1090
BmeRI	GACNNNNNGTC	2 cut(s)	739, 1039
BmgT120I	GGNCC	3 cut(s)	196, 824, 1090
BmiI	GGNNCC	3 cut(s)	325, 393, 769
BmrFI	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	3 cut(s)	284, 570, 617
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	3 cut(s)	378, 516, 953
Bpu10I	CCTNAGC	2 cut(s)	858, 952
BpuEI	CTTGAG	1 cut(s)	81
BsaHI	GRCGYC	3 cut(s)	67, 285, 740
BsaJI	CCNNGG	3 cut(s)	71, 119, 654
Bsc4I	CCNNNNNNNGG	6 cut(s)	167, 218, 333, 681, 713, 1015
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	5 cut(s)	325, 434, 533, 630, 970
Bse3DI	GCAATG	2 cut(s)	21, 190
BseBI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BseDI	CCNNGG	3 cut(s)	71, 119, 654
BseGI	GGATG	4 cut(s)	42, 429, 991, 1027
BseLI	CCNNNNNNNGG	6 cut(s)	167, 218, 333, 681, 713, 1015
BseMI	GCAATG	2 cut(s)	21, 190
BseMII	CTCAG	4 cut(s)	313, 879, 903, 915
BseNI	ACTGG	5 cut(s)	325, 434, 533, 630, 970
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	6 cut(s)	94, 139, 218, 526, 646, 688
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	197, 519
BshNI	GGYRCC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	6 cut(s)	167, 218, 333, 681, 713, 1015
BsmFI	GGGAC	1 cut(s)	881
BsmI	GAATGC	2 cut(s)	109, 154
BsnI	GGCC	2 cut(s)	197, 519
Bsp1286I	GDGCHC	2 cut(s)	120, 966
Bsp143I	GATC	4 cut(s)	10, 408, 767, 832
BspACI	CCGC	3 cut(s)	142, 254, 490
BspANI	GGCC	2 cut(s)	197, 519
BspCNI	CTCAG	4 cut(s)	312, 880, 904, 914
BspLI	GGNNCC	3 cut(s)	325, 393, 769
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	4 cut(s)	403, 762, 775, 827
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	21, 190
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	5 cut(s)	325, 434, 533, 630, 970
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	71, 119, 654
BssMI	GATC	4 cut(s)	10, 408, 767, 832
BssNI	GRCGYC	3 cut(s)	67, 285, 740
Bst2UI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
Bst4CI	ACNGT	2 cut(s)	550, 1107
BstACI	GRCGYC	3 cut(s)	67, 285, 740
BstAPI	GCANNNNNTGC	1 cut(s)	1060
BstC8I	GCNNGC	2 cut(s)	6, 289
BstDEI	CTNAG	6 cut(s)	299, 858, 888, 901, 912, 952
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	42, 429, 991, 1027
BstKTI	GATC	4 cut(s)	13, 411, 770, 835
BstMBI	GATC	4 cut(s)	10, 408, 767, 832
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 589, 656, 668, 1060
BstNI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BstSCI	CCNGG	6 cut(s)	119, 166, 192, 352, 654, 735
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	6 cut(s)	94, 139, 218, 526, 646, 688
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	197, 519
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	42, 429, 991, 1027
BtsIMutI	CAGTG	2 cut(s)	540, 637
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	2 cut(s)	6, 289
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	196, 824, 1090
CseI	GACGC	3 cut(s)	75, 293, 729
Csp6I	GTAC	3 cut(s)	222, 228, 374
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	5 cut(s)	419, 458, 503, 800, 1072
CviQI	GTAC	3 cut(s)	222, 228, 374
DdeI	CTNAG	6 cut(s)	299, 858, 888, 901, 912, 952
DpnI	GATC	4 cut(s)	12, 410, 769, 834
DpnII	GATC	4 cut(s)	10, 408, 767, 832
DriI	GACNNNNNGTC	2 cut(s)	739, 1039
Eam1105I	GACNNNNNGTC	2 cut(s)	739, 1039
Eco24I	GRGCYC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	824, 1090
Eco57I	CTGAAG	1 cut(s)	495
EcoRII	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
EcoT22I	ATGCAT	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	966
FaeI	CATG	5 cut(s)	422, 461, 506, 803, 1075
FaiI	YATR	8 cut(s)	363, 420, 459, 465, 504, 668, 801, 1073
FalI	AAGNNNNNCTT	2 cut(s)	1126, 1158
FaqI	GGGAC	1 cut(s)	881
FatI	CATG	5 cut(s)	418, 457, 502, 799, 1071
FauI	CCCGC	2 cut(s)	135, 497
Fnu4HI	GCNGC	6 cut(s)	108, 153, 207, 540, 660, 702
FokI	GGATG	4 cut(s)	29, 416, 978, 1034
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	6 cut(s)	108, 153, 207, 540, 660, 702
FspBI	CTAG	5 cut(s)	477, 593, 783, 923, 930
GluI	GCNGC	6 cut(s)	108, 153, 207, 540, 660, 702
GsuI	CTGGAG	3 cut(s)	378, 516, 953
HaeIII	GGCC	2 cut(s)	197, 519
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	3 cut(s)	75, 293, 729
Hin1I	GRCGYC	3 cut(s)	67, 285, 740
Hin1II	CATG	5 cut(s)	422, 461, 506, 803, 1075
HinfI	GANTC	8 cut(s)	92, 171, 529, 635, 640, 905, 916, 1130
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	619, 911, 1096
Hpy166II	GTNNAC	2 cut(s)	59, 65
Hpy188I	TCNGA	7 cut(s)	129, 302, 413, 514, 904, 1028, 1045
Hpy188III	TCNNGA	5 cut(s)	14, 395, 477, 567, 1155
Hpy8I	GTNNAC	2 cut(s)	59, 65
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	5 cut(s)	305, 509, 1069, 1081, 1152
HpyCH4III	ACNGT	2 cut(s)	550, 1107
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	8 cut(s)	4, 542, 603, 650, 662, 799, 1054, 1063
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 589, 656, 668, 1060
HpyF3I	CTNAG	6 cut(s)	299, 858, 888, 901, 912, 952
HpySE526I	ACGT	1 cut(s)	61
Hsp92I	GRCGYC	3 cut(s)	67, 285, 740
Hsp92II	CATG	5 cut(s)	422, 461, 506, 803, 1075
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	10, 408, 767, 832
LmnI	GCTCC	5 cut(s)	115, 180, 370, 397, 709
Lsp1109I	GCAGC	6 cut(s)	94, 139, 218, 526, 646, 688
LweI	GCATC	3 cut(s)	284, 570, 617
MaeI	CTAG	5 cut(s)	477, 593, 783, 923, 930
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	917, 932
MalI	GATC	4 cut(s)	12, 410, 769, 834
MboI	GATC	4 cut(s)	10, 408, 767, 832
MboII	GAAGA	1 cut(s)	337
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	2 cut(s)	120, 966
MluCI	AATT	1 cut(s)	723
MlyI	GAGTC	3 cut(s)	523, 649, 925
MmeI	TCCRAC	1 cut(s)	436
Mph1103I	ATGCAT	1 cut(s)	801
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	4 cut(s)	498, 552, 807, 938
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	701, 911
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
Mva1269I	GAATGC	2 cut(s)	109, 154
MvaI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
MwoI	GCNNNNNNNGC	5 cut(s)	203, 589, 656, 668, 1060
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	4 cut(s)	10, 408, 767, 832
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	5 cut(s)	422, 461, 506, 803, 1075
NlaIV	GGNNCC	3 cut(s)	325, 393, 769
NmuCI	GTSAC	1 cut(s)	917
NsiI	ATGCAT	1 cut(s)	801
PctI	GAATGC	2 cut(s)	109, 154
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	5 cut(s)	92, 171, 635, 905, 1130
PflMI	CCANNNNNTGG	3 cut(s)	218, 713, 1015
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	6 cut(s)	109, 154, 208, 541, 661, 703
PleI	GAGTC	3 cut(s)	523, 648, 924
PpsI	GAGTC	3 cut(s)	523, 648, 924
Psp6I	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
PspGI	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
PspN4I	GGNNCC	3 cut(s)	325, 393, 769
PspPI	GGNCC	3 cut(s)	196, 824, 1090
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	767
PvuII	CAGCTG	2 cut(s)	701, 911
RsaI	GTAC	3 cut(s)	223, 229, 375
RsaNI	GTAC	3 cut(s)	222, 228, 374
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	498, 552, 807, 938
SatI	GCNGC	6 cut(s)	108, 153, 207, 540, 660, 702
Sau3AI	GATC	4 cut(s)	10, 408, 767, 832
Sau96I	GGNCC	3 cut(s)	196, 824, 1090
SchI	GAGTC	3 cut(s)	523, 649, 925
ScrFI	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
SduI	GDGCHC	2 cut(s)	120, 966
SfaNI	GCATC	3 cut(s)	284, 570, 617
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	2 cut(s)	824, 1090
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	723
SsiI	CCGC	3 cut(s)	142, 254, 490
SspMI	CTAG	5 cut(s)	477, 593, 783, 923, 930
StyD4I	CCNGG	6 cut(s)	119, 166, 192, 352, 654, 735
TaaI	ACNGT	2 cut(s)	550, 1107
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	638
TasI	AATT	1 cut(s)	723
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	5 cut(s)	92, 171, 635, 905, 1130
Tru1I	TTAA	4 cut(s)	498, 552, 807, 938
Tru9I	TTAA	4 cut(s)	498, 552, 807, 938
TscAI	CASTG	2 cut(s)	540, 637
TseFI	GTSAC	1 cut(s)	917
TseI	GCWGC	6 cut(s)	107, 152, 206, 539, 659, 701
Tsp45I	GTSAC	1 cut(s)	917
TspDTI	ATGAA	4 cut(s)	435, 446, 827, 1088
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	540, 637
Van91I	CCANNNNNTGG	3 cut(s)	218, 713, 1015
VpaK11BI	GGWCC	2 cut(s)	824, 1090
XbaI	TCTAGA	1 cut(s)	476
XspI	CTAG	5 cut(s)	477, 593, 783, 923, 930
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.