Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Forward (+)

16634423 .. 16635848

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAGCCAATCGGATCAAGGGAACACCCCTGATGGCTCGTCAAGTATCCCTATGAAGCGAAAACGCGGCCGTCCACGGAAATATCCCAAACCAGATCTGGAAGAGAATGCTCATGTGACAAACACTCCAAATCTGAACACGGGGGAAAATGGTGGTAATGGTATTCCTTCTGCTCCTCCTGGGTTTTTAGGGAGGAATGGATACCAGCCCCATCGTCGAGCTCCCACTAATGGTGCAGCTGATGTCATGGTCGGAACAGTAGTTTCTGGTGTCATTGATGCAACATTTGATGGAGGATATCTACTTAGTGTTAGGGTTGGCAACTCTCCCACCACTTTGAGGGGTGTCATCTTCAAGCCTGGACGTTACGTTCCTGTTTCAGCGGAGAATGATGTGGCCCCAGATGTTCAAATGATTAGGCGAAATGTGATTCCAAATCCAGCTGAGATCGCTCATTTACATGGTTCGAGCCCTCGTTCTAGAGATGCCATTCGATCTGTTAATCATGTAGCATCAAAACGCAAACATATGGTTCCAGTGGCACCCCAAACTGCTAACCCACTACTGTCCAGAGGCAACTTGTTGCCTGTTATACTGCAACCTCGAAATTTATCTGAAGGGGTACCACTCACTGGTTTACCAAATTCTGTTGCACCGGGTGCTCCTCCGACTAATGGGTCCATACGCACCAACTGGGTGCCACTCACCAATGAAGTCGCAAACCAATCTTCAGATCTGGCAACTTCAAAAGTTAAGCAGGTTCCTTCAGTTCCTCCATCAAATGGGTCGATATCTACCAACCAGATTCCGACAGTTGGAAATCAATCGTTGGTCTTCGAAGGTGGACAAAATGAGAATGGTACTTGTAATCAACCATCGACAGAGATGCTGAAGGCAGAAGCCAAATCAACGAGACTCCCAAATATACCTTTTGAAAAATTGGTTACCGAGGTAGTTAAGAGGATTGATACACCCTCACAAGCCCCCGCACATTCAACTGAGGTAAACATTGAGTGTAGCAAGTCAACTGGCAGTGAGCTGGAGGACGATATGGATCAGCCTCTAGTAATCGAGCCTCTGCAAGCCATACAGCCTAAAGAACACTCTATGCCACTTTCAAAACCGCCGGAGGACGATGGAAATGGAAAAATGTCTGAGCTGTTGCAGGAAAGCATGAGGGAAAGCGAGTCAACCACAGATTCGAGAGTGAAGTCGGATGAACCAAGCCAAACTGCGCTCGGAGATGAAGAATCCGATCATTCAAGAAAACCTTCCGACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

45.6

Weight (kDa)

6.04

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	676
Acc36I	ACCTGC	1 cut(s)	748
Acc65I	GGTACC	1 cut(s)	622
AccB1I	GGYRCC	3 cut(s)	541, 622, 697
AccB7I	CCANNNNNTGG	2 cut(s)	632, 782
AccII	CGCG	1 cut(s)	66
AciI	CCGC	4 cut(s)	66, 383, 987, 1124
AclWI	GGATC	2 cut(s)	21, 1062
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	607, 643
AcuI	CTGAAG	4 cut(s)	636, 714, 750, 911
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	624, 862
AfiI	CCNNNNNNNGG	6 cut(s)	230, 339, 632, 674, 782, 815
AgsI	TTSAA	7 cut(s)	355, 410, 747, 935, 996, 1119, 1263
AjnI	CCWGG	2 cut(s)	178, 358
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	5 cut(s)	221, 239, 443, 1039, 1159
AluI	AGCT	5 cut(s)	221, 239, 443, 1039, 1159
Alw21I	GWGCWC	2 cut(s)	223, 664
Alw26I	GTCTC	1 cut(s)	907
AlwI	GGATC	2 cut(s)	21, 1062
AoxI	GGCC	2 cut(s)	67, 396
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	607, 643
Asp700I	GAANNNNTTC	1 cut(s)	1270
Asp718I	GGTACC	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	1237
AspS9I	GGNCC	2 cut(s)	397, 678
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	1 cut(s)	697
AsuII	TTCGAA	1 cut(s)	837
AvaII	GGWCC	1 cut(s)	678
BanI	GGYRCC	3 cut(s)	541, 622, 697
BanII	GRGCYC	2 cut(s)	223, 473
BbsI	GAAGAC	1 cut(s)	826
Bbv12I	GWGCWC	2 cut(s)	223, 664
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	6 cut(s)	26, 219, 284, 784, 883, 1130
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	868, 902
BciT130I	CCWGG	2 cut(s)	180, 360
BciVI	GTATCC	2 cut(s)	56, 194
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	907
BfaI	CTAG	2 cut(s)	480, 1064
BfuAI	ACCTGC	1 cut(s)	748
BfuI	GTATCC	2 cut(s)	56, 194
BglII	AGATCT	2 cut(s)	94, 733
BisI	GCNGC	2 cut(s)	67, 237
BlsI	GCNGC	2 cut(s)	68, 238
Bme1390I	CCNGG	3 cut(s)	180, 360, 657
Bme18I	GGWCC	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	397, 678
BmiI	GGNNCC	7 cut(s)	399, 534, 543, 624, 679, 699, 762
BmrFI	CCNGG	3 cut(s)	180, 360, 657
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	4 cut(s)	268, 475, 521, 876
BmuI	ACTGGG	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	826
BpmI	CTGGAG	1 cut(s)	1061
Bpu14I	TTCGAA	1 cut(s)	837
BpuMI	CCSGG	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaJI	CCNNGG	3 cut(s)	74, 179, 948
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	6 cut(s)	230, 339, 632, 674, 782, 815
Bse1I	ACTGG	4 cut(s)	536, 637, 698, 1033
Bse8I	GATNNNNATC	1 cut(s)	1053
BseBI	CCWGG	2 cut(s)	180, 360
BseDI	CCNNGG	3 cut(s)	74, 179, 948
BseGI	GGATG	1 cut(s)	1222
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	6 cut(s)	230, 339, 632, 674, 782, 815
BseMII	CTCAG	3 cut(s)	435, 990, 1146
BseNI	ACTGG	4 cut(s)	536, 637, 698, 1033
BseRI	GAGGAG	2 cut(s)	165, 654
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	69, 398
BshNI	GGYRCC	3 cut(s)	541, 622, 697
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	223, 664
BsiSI	CCGG	2 cut(s)	656, 1127
BslI	CCNNNNNNNGG	6 cut(s)	230, 339, 632, 674, 782, 815
BsmAI	GTCTC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	69, 398
Bsp119I	TTCGAA	1 cut(s)	837
Bsp1286I	GDGCHC	3 cut(s)	223, 473, 664
Bsp143I	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
BspACI	CCGC	4 cut(s)	66, 383, 987, 1124
BspANI	GGCC	2 cut(s)	69, 398
BspCNI	CTCAG	3 cut(s)	436, 991, 1147
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	7 cut(s)	399, 534, 543, 624, 679, 699, 762
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	2 cut(s)	21, 1062
BspT104I	TTCGAA	1 cut(s)	837
BspT107I	GGYRCC	3 cut(s)	541, 622, 697
BsrI	ACTGG	4 cut(s)	536, 637, 698, 1033
BssECI	CCNNGG	3 cut(s)	74, 179, 948
BssMI	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
Bst2UI	CCWGG	2 cut(s)	180, 360
Bst4CI	ACNGT	3 cut(s)	259, 567, 814
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBI	TTCGAA	1 cut(s)	837
BstC8I	GCNNGC	1 cut(s)	1083
BstDEI	CTNAG	4 cut(s)	305, 444, 999, 1155
BstDSI	CCRYGG	1 cut(s)	74
BstEII	GGTNACC	1 cut(s)	943
BstF5I	GGATG	1 cut(s)	1222
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	1237
BstKTI	GATC	7 cut(s)	16, 97, 450, 497, 736, 1057, 1258
BstMAI	GTCTC	1 cut(s)	907
BstMBI	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 659
BstNI	CCWGG	2 cut(s)	180, 360
BstPI	GGTNACC	1 cut(s)	943
BstSCI	CCNGG	3 cut(s)	178, 358, 655
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	826
BstX2I	RGATCY	2 cut(s)	94, 733
BstYI	RGATCY	2 cut(s)	94, 733
BstZI	CGGCCG	1 cut(s)	67
BsuI	GTATCC	2 cut(s)	56, 194
BsuRI	GGCC	2 cut(s)	69, 398
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	1222
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	3 cut(s)	543, 630, 1039
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	1 cut(s)	1083
CfoI	GCGC	1 cut(s)	1237
Cfr13I	GGNCC	2 cut(s)	397, 678
Csp6I	GTAC	2 cut(s)	623, 861
CviAII	CATG	6 cut(s)	113, 247, 461, 506, 1174, 1281
CviQI	GTAC	2 cut(s)	623, 861
DdeI	CTNAG	4 cut(s)	305, 444, 999, 1155
DpnI	GATC	7 cut(s)	15, 96, 449, 496, 735, 1056, 1257
DpnII	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
DraIII	CACNNNGTG	1 cut(s)	659
DrdI	GACNNNNNNGTC	1 cut(s)	676
DseDI	GACNNNNNNGTC	1 cut(s)	676
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	221
EclXI	CGGCCG	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	223, 473
Eco32I	GATATC	2 cut(s)	299, 792
Eco47I	GGWCC	1 cut(s)	678
Eco52I	CGGCCG	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	4 cut(s)	636, 714, 750, 911
Eco91I	GGTNACC	1 cut(s)	943
EcoICRI	GAGCTC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	943
EcoRII	CCWGG	2 cut(s)	178, 358
EcoRV	GATATC	2 cut(s)	299, 792
EcoT38I	GRGCYC	2 cut(s)	223, 473
FaeI	CATG	6 cut(s)	116, 250, 464, 509, 1177, 1284
FalI	AAGNNNNNCTT	1 cut(s)	1255
FatI	CATG	6 cut(s)	112, 246, 460, 505, 1173, 1280
FauI	CCCGC	1 cut(s)	994
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	67, 237
FokI	GGATG	1 cut(s)	1229
FriOI	GRGCYC	2 cut(s)	223, 473
Fsp4HI	GCNGC	2 cut(s)	67, 237
FspBI	CTAG	2 cut(s)	480, 1064
GlaI	GCGC	1 cut(s)	1236
GluI	GCNGC	2 cut(s)	67, 237
GsuI	CTGGAG	1 cut(s)	1061
HaeIII	GGCC	2 cut(s)	69, 398
HapII	CCGG	2 cut(s)	656, 1127
HhaI	GCGC	1 cut(s)	1237
Hin1II	CATG	6 cut(s)	116, 250, 464, 509, 1177, 1284
Hin6I	GCGC	1 cut(s)	1235
HinP1I	GCGC	1 cut(s)	1235
HincII	GTYRAC	2 cut(s)	1026, 1191
HindII	GTYRAC	2 cut(s)	1026, 1191
HinfI	GANTC	6 cut(s)	430, 805, 915, 1187, 1199, 1250
HpaII	CCGG	2 cut(s)	656, 1127
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	6 cut(s)	74, 638, 845, 1006, 1026, 1191
Hpy188III	TCNNGA	5 cut(s)	98, 480, 570, 1203, 1263
Hpy8I	GTNNAC	6 cut(s)	74, 638, 845, 1006, 1026, 1191
Hpy99I	CGWCG	2 cut(s)	219, 1280
HpyAV	CCTTC	6 cut(s)	177, 611, 774, 833, 886, 1281
HpyCH4III	ACNGT	3 cut(s)	259, 567, 814
HpyCH4IV	ACGT	2 cut(s)	364, 369
HpyCH4V	TGCA	6 cut(s)	236, 281, 598, 653, 1081, 1165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 659
HpyF3I	CTNAG	4 cut(s)	305, 444, 999, 1155
HpySE526I	ACGT	2 cut(s)	364, 369
Hsp92II	CATG	6 cut(s)	116, 250, 464, 509, 1177, 1284
HspAI	GCGC	1 cut(s)	1235
KpnI	GGTACC	1 cut(s)	626
Kzo9I	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
LmnI	GCTCC	3 cut(s)	178, 226, 667
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	4 cut(s)	268, 475, 521, 876
MaeI	CTAG	2 cut(s)	480, 1064
MaeII	ACGT	2 cut(s)	364, 369
MaeIII	GTNAC	3 cut(s)	115, 365, 943
MalI	GATC	7 cut(s)	15, 96, 449, 496, 735, 1056, 1257
MboI	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
MboII	GAAGA	5 cut(s)	113, 343, 720, 826, 1259
MflI	RGATCY	2 cut(s)	94, 733
MhlI	GDGCHC	3 cut(s)	223, 473, 664
MluCI	AATT	3 cut(s)	607, 643, 938
MlyI	GAGTC	2 cut(s)	909, 1196
MmeI	TCCRAC	5 cut(s)	232, 692, 796, 833, 1194
MroXI	GAANNNNTTC	1 cut(s)	1270
MseI	TTAA	3 cut(s)	501, 753, 957
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	3 cut(s)	239, 383, 443
MspI	CCGG	2 cut(s)	656, 1127
MspR9I	CCNGG	3 cut(s)	180, 360, 657
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	180, 360
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	449, 659
NciI	CCSGG	1 cut(s)	657
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
NlaIII	CATG	6 cut(s)	116, 250, 464, 509, 1177, 1284
NlaIV	GGNNCC	7 cut(s)	399, 534, 543, 624, 679, 699, 762
NmuCI	GTSAC	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	837
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	1270
PfeI	GAWTC	4 cut(s)	430, 805, 1199, 1250
PflMI	CCANNNNNTGG	2 cut(s)	632, 782
PkrI	GCNGC	2 cut(s)	68, 238
PleI	GAGTC	2 cut(s)	909, 1195
PpsI	GAGTC	2 cut(s)	909, 1195
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	178, 358
PspEI	GGTNACC	1 cut(s)	943
PspGI	CCWGG	2 cut(s)	178, 358
PspN4I	GGNNCC	7 cut(s)	399, 534, 543, 624, 679, 699, 762
PspPI	GGNCC	2 cut(s)	397, 678
PsuI	RGATCY	2 cut(s)	94, 733
PvuII	CAGCTG	2 cut(s)	239, 443
RsaI	GTAC	2 cut(s)	624, 862
RsaNI	GTAC	2 cut(s)	623, 861
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	501, 753, 957
SatI	GCNGC	2 cut(s)	67, 237
Sau3AI	GATC	7 cut(s)	13, 94, 447, 494, 733, 1054, 1255
Sau96I	GGNCC	2 cut(s)	397, 678
SchI	GAGTC	2 cut(s)	909, 1196
ScrFI	CCNGG	3 cut(s)	180, 360, 657
SduI	GDGCHC	3 cut(s)	223, 473, 664
SfaNI	GCATC	4 cut(s)	268, 475, 521, 876
SfuI	TTCGAA	1 cut(s)	837
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	3 cut(s)	607, 643, 938
SsiI	CCGC	4 cut(s)	66, 383, 987, 1124
SspMI	CTAG	2 cut(s)	480, 1064
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	178, 358, 655
TaaI	ACNGT	3 cut(s)	259, 567, 814
TaiI	ACGT	2 cut(s)	367, 372
TaqI	TCGA	9 cut(s)	217, 467, 493, 604, 788, 837, 878, 1071, 1202
TasI	AATT	3 cut(s)	607, 643, 938
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	4 cut(s)	430, 805, 1199, 1250
Tru1I	TTAA	3 cut(s)	501, 753, 957
Tru9I	TTAA	3 cut(s)	501, 753, 957
TscAI	CASTG	3 cut(s)	543, 637, 1039
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	4 cut(s)	68, 726, 1233, 1260
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	3 cut(s)	543, 637, 1039
Van91I	CCANNNNNTGG	2 cut(s)	632, 782
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	2 cut(s)	607, 643
XbaI	TCTAGA	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	1270
XspI	CTAG	2 cut(s)	480, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.