Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Reverse (-)

16602318 .. 16609453

Gene Structure 7136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0177900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTTCAGCTCTTTTTGCAAGGACTCTTTTGGGTCATCGCCTTTTTCACTCTTCAGCACACTCTCTCTCCCCAAAGCCCCAAATCCTCTCTTCCCTGCTCAATAAAAGATCAGATCTCTTGCGAGCTGACTCTTCGTATACAAAATATAGAGTATCTGGTTTAATACCTCGTGCTATGGCTTCATCAGTAGCTGGGGCAAGAGCAGATTTTTCAACATCGGCATCTACAAATGAGCCTGTTGTTTCTGTTGATTGGCTCCATGCTAATCTCAAGGAGCCTGACCTTAAGGTTGTGGATGCGTCTTGGTACATGCCTGATGAGCAAAGGAATCCAATTCAAGAGTATCAGGTTGCTCATATTCCTGGTGCCCTTTTCTTTGACGTAGATGGAATATCGGATCGCACAACAAAATTACCACATATGTTACCATCTGAGGAAGCCTTTGCTGCTGCTGTTTCTGCTCTTGGCATTGAGAACAAAGACGATCTAGTTGTGTATGATGGGAAAGGGCTTTTTAGTGCAGCTCGTGTGTGGTGGATGTTCCGAGTGTTTGGCCATGATAGAGTCTGGGTTTTAGATGGAGGCTTGCCAAGATGGCGTGCATCTGGATATGACGTTGAATCTAGTGCTTCTGGCGATGCGATTTTGAAAGCTAGTGCTGCCAGTGAGGCAATAGAGAAAGTTTATAAGGGACAGCCAGTTGGTCCAAACACATTTCAGACTAAATTTCAGCCACATCTTGTCTGGAATCTTGAGCAGGTTAAAAGAAATGTTGAGGAAAGAACTCACCAGCATATAGATGCCCGATCAAAGGCCAGATTTGATGGAACTGCATTGGAGCCTCGGAAAGGGATAAGAAGTGGTCACGTACCTGGAAGCAAGTGCATTCCTTTTCCTCAGTTGTTGGATGCTTCAGGGACAGTCTTACCAGCGGACGAGTTGAAAAAAAGATTTGATGAAGCAGGCATCACATTGGACAGCCCTGTTGTTACTTCGTGCGGCACTGGTGTAACTGCTTGCATTCTCGCATTGGGTCTTCATAAACTTGGTAAGCCTGATGTGGCAGTCTATGATGGGTCTTGGACTGAGTGGGGAGCACATTCCGACACACCCGTCGACACTTCCACTTCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

41.32

Weight (kDa)

6.5

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	83 - 202	2.6e-13	Rhodanese-like domain
Rhodanese	PF00581	253 - 367	2.2e-12	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
AasI	GACNNNNNNGTC	1 cut(s)	1115
Acc36I	ACCTGC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	368
AccI	GTMKAC	2 cut(s)	140, 1119
AciI	CCGC	2 cut(s)	935, 1002
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	2 cut(s)	39, 900
AfaI	GTAC	2 cut(s)	311, 873
AfiI	CCNNNNNNNGG	2 cut(s)	814, 851
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	216, 341, 623, 652, 946
AjnI	CCWGG	2 cut(s)	364, 874
AluBI	AGCT	5 cut(s)	11, 128, 194, 527, 656
AluI	AGCT	5 cut(s)	11, 128, 194, 527, 656
Alw21I	GWGCWC	1 cut(s)	1102
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	556, 816
ApeKI	GCWGC	4 cut(s)	449, 452, 524, 662
ApoI	RAATTY	1 cut(s)	728
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	368
BauI	CACGAG	2 cut(s)	171, 528
BbsI	GAAGAC	1 cut(s)	1031
Bbv12I	GWGCWC	1 cut(s)	1102
BbvI	GCAGC	4 cut(s)	436, 439, 536, 649
BccI	CCATC	7 cut(s)	383, 439, 497, 575, 591, 821, 1070
BciT130I	CCWGG	2 cut(s)	366, 876
BfaI	CTAG	3 cut(s)	491, 627, 657
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	751
BglI	GCCNNNNNGGC	2 cut(s)	598, 671
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	5 cut(s)	450, 453, 525, 663, 1003
BlsI	GCNGC	5 cut(s)	451, 454, 526, 664, 1004
Bme1390I	CCNGG	2 cut(s)	366, 876
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	4 cut(s)	260, 279, 370, 843
BmrFI	CCNGG	2 cut(s)	366, 876
BmsI	GCATC	7 cut(s)	233, 289, 614, 631, 793, 901, 978
BpiI	GAAGAC	1 cut(s)	1031
BpuEI	CTTGAG	2 cut(s)	257, 776
BsaAI	YACGTR	1 cut(s)	871
BsaJI	CCNNGG	1 cut(s)	845
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	814, 851
Bse1I	ACTGG	3 cut(s)	666, 701, 1012
BseBI	CCWGG	2 cut(s)	366, 876
BseDI	CCNNGG	1 cut(s)	845
BseGI	GGATG	3 cut(s)	304, 546, 916
BseLI	CCNNNNNNNGG	2 cut(s)	814, 851
BseMII	CTCAG	3 cut(s)	426, 914, 1080
BseNI	ACTGG	3 cut(s)	666, 701, 1012
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	436, 439, 536, 649
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	558, 818
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	1102
BslFI	GGGAC	2 cut(s)	708, 934
BslI	CCNNNNNNNGG	2 cut(s)	814, 851
BsmFI	GGGAC	2 cut(s)	708, 934
BsmI	GAATGC	2 cut(s)	888, 1023
BsnI	GGCC	2 cut(s)	558, 818
Bsp1286I	GDGCHC	2 cut(s)	373, 1102
Bsp143I	GATC	5 cut(s)	110, 115, 400, 487, 809
BspACI	CCGC	2 cut(s)	935, 1002
BspANI	GGCC	2 cut(s)	558, 818
BspCNI	CTCAG	3 cut(s)	427, 913, 1081
BspLI	GGNNCC	4 cut(s)	260, 279, 370, 843
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	287
BsrI	ACTGG	3 cut(s)	666, 701, 1012
BssECI	CCNNGG	1 cut(s)	845
BssMI	GATC	5 cut(s)	110, 115, 400, 487, 809
BssNAI	GTATAC	1 cut(s)	141
BssSI	CACGAG	2 cut(s)	171, 528
Bst1107I	GTATAC	1 cut(s)	141
Bst2BI	CACGAG	2 cut(s)	171, 528
Bst2UI	CCWGG	2 cut(s)	366, 876
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	3 cut(s)	58, 97, 139
BstAFI	CTTAAG	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	871
BstC8I	GCNNGC	5 cut(s)	126, 590, 603, 967, 1021
BstDEI	CTNAG	3 cut(s)	435, 900, 1089
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	304, 546, 916
BstKTI	GATC	5 cut(s)	113, 118, 403, 490, 812
BstMBI	GATC	5 cut(s)	110, 115, 400, 487, 809
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 322, 449, 461, 598, 662, 671
BstNI	CCWGG	2 cut(s)	366, 876
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	364, 874
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	436, 439, 536, 649
BstV2I	GAAGAC	1 cut(s)	1031
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	558, 818
BtgZI	GCGATG	2 cut(s)	23, 654
BtsCI	GGATG	3 cut(s)	304, 546, 916
BtsIMutI	CAGTG	2 cut(s)	673, 1005
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	5 cut(s)	126, 590, 603, 967, 1021
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	310, 872
CviAII	CATG	3 cut(s)	263, 313, 560
CviQI	GTAC	2 cut(s)	310, 872
DdeI	CTNAG	3 cut(s)	435, 900, 1089
DpnI	GATC	5 cut(s)	112, 117, 402, 489, 811
DpnII	GATC	5 cut(s)	110, 115, 400, 487, 809
DrdI	GACNNNNNNGTC	1 cut(s)	1115
DseDI	GACNNNNNNGTC	1 cut(s)	1115
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	3 cut(s)	58, 97, 139
EarI	CTCTTC	3 cut(s)	58, 97, 139
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	2 cut(s)	39, 900
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	364, 874
FaeI	CATG	3 cut(s)	266, 316, 563
FaqI	GGGAC	2 cut(s)	708, 934
FatI	CATG	3 cut(s)	262, 312, 559
FauNDI	CATATG	1 cut(s)	423
FblI	GTMKAC	2 cut(s)	140, 1119
Fnu4HI	GCNGC	5 cut(s)	450, 453, 525, 663, 1003
FokI	GGATG	3 cut(s)	311, 553, 923
Fsp4HI	GCNGC	5 cut(s)	450, 453, 525, 663, 1003
FspBI	CTAG	3 cut(s)	491, 627, 657
GluI	GCNGC	5 cut(s)	450, 453, 525, 663, 1003
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	558, 818
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	266, 316, 563
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HinfI	GANTC	6 cut(s)	25, 131, 331, 567, 623, 751
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	2 cut(s)	141, 1120
Hpy188I	TCNGA	7 cut(s)	115, 400, 436, 548, 723, 849, 1108
Hpy188III	TCNNGA	5 cut(s)	341, 609, 748, 755, 1137
Hpy8I	GTNNAC	2 cut(s)	141, 1120
Hpy99I	CGWCG	1 cut(s)	1121
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	3 cut(s)	384, 618, 870
HpyCH4V	TGCA	6 cut(s)	20, 524, 605, 836, 888, 1023
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 322, 449, 461, 598, 662, 671
HpyF3I	CTNAG	3 cut(s)	435, 900, 1089
HpySE526I	ACGT	3 cut(s)	384, 618, 870
Hsp92II	CATG	3 cut(s)	266, 316, 563
Kzo9I	GATC	5 cut(s)	110, 115, 400, 487, 809
LmnI	GCTCC	4 cut(s)	264, 277, 841, 1097
Lsp1109I	GCAGC	4 cut(s)	436, 439, 536, 649
LweI	GCATC	7 cut(s)	233, 289, 614, 631, 793, 901, 978
MaeI	CTAG	3 cut(s)	491, 627, 657
MaeII	ACGT	3 cut(s)	384, 618, 870
MaeIII	GTNAC	4 cut(s)	426, 866, 991, 1012
MalI	GATC	5 cut(s)	112, 117, 402, 489, 811
MboI	GATC	5 cut(s)	110, 115, 400, 487, 809
MboII	GAAGA	5 cut(s)	45, 84, 126, 1031, 1125
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	373, 1102
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	3 cut(s)	336, 413, 728
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	3 cut(s)	19, 125, 576
MmeI	TCCRAC	2 cut(s)	888, 1131
MnlI	CCTC	8 cut(s)	98, 180, 430, 578, 664, 772, 855, 909
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	3 cut(s)	164, 288, 765
MslI	CAYNNNNRTG	1 cut(s)	801
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	935
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	366, 876
Mva1269I	GAATGC	2 cut(s)	888, 1023
MvaI	CCWGG	2 cut(s)	366, 876
MwoI	GCNNNNNNNGC	7 cut(s)	17, 322, 449, 461, 598, 662, 671
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	5 cut(s)	110, 115, 400, 487, 809
NlaIII	CATG	3 cut(s)	266, 316, 563
NlaIV	GGNNCC	4 cut(s)	260, 279, 370, 843
NmuCI	GTSAC	1 cut(s)	866
NspI	RCATGY	1 cut(s)	316
PctI	GAATGC	2 cut(s)	888, 1023
PfeI	GAWTC	3 cut(s)	331, 623, 751
PkrI	GCNGC	5 cut(s)	451, 454, 526, 664, 1004
PleI	GAGTC	3 cut(s)	19, 125, 575
PpsI	GAGTC	3 cut(s)	19, 125, 575
Ppu21I	YACGTR	1 cut(s)	871
PsiI	TTATAA	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	364, 874
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	364, 874
PspN4I	GGNNCC	4 cut(s)	260, 279, 370, 843
PspPI	GGNCC	1 cut(s)	707
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	2 cut(s)	311, 873
RsaNI	GTAC	2 cut(s)	310, 872
RseI	CAYNNNNRTG	1 cut(s)	801
SalI	GTCGAC	1 cut(s)	1118
SaqAI	TTAA	3 cut(s)	164, 288, 765
SatI	GCNGC	5 cut(s)	450, 453, 525, 663, 1003
Sau3AI	GATC	5 cut(s)	110, 115, 400, 487, 809
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	3 cut(s)	19, 125, 576
ScrFI	CCNGG	2 cut(s)	366, 876
SduI	GDGCHC	2 cut(s)	373, 1102
SfaNI	GCATC	7 cut(s)	233, 289, 614, 631, 793, 901, 978
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	3 cut(s)	272, 287, 755
SmoI	CTYRAG	3 cut(s)	272, 287, 755
Sse9I	AATT	3 cut(s)	336, 413, 728
SsiI	CCGC	2 cut(s)	935, 1002
SspMI	CTAG	3 cut(s)	491, 627, 657
StyD4I	CCNGG	2 cut(s)	364, 874
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	3 cut(s)	387, 621, 873
TaqI	TCGA	1 cut(s)	1119
TasI	AATT	3 cut(s)	336, 413, 728
TauI	GCSGC	1 cut(s)	1005
TfiI	GAWTC	3 cut(s)	331, 623, 751
Tru1I	TTAA	3 cut(s)	164, 288, 765
Tru9I	TTAA	3 cut(s)	164, 288, 765
TscAI	CASTG	2 cut(s)	673, 1012
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	4 cut(s)	449, 452, 524, 662
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	3 cut(s)	174, 975, 1031
TspRI	CASTG	2 cut(s)	673, 1012
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	707
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	744
XmiI	GTMKAC	2 cut(s)	140, 1119
XspI	CTAG	3 cut(s)	491, 627, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.