Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Forward (+)

59819569 .. 59822427

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCAAGGAGATCAAGAAAACATTGCTGATGCCTTATCAAACATCCCTGTGAAGCGTAAACGTGGACGCCCACGGAAATATCCAAGACTTGATCCTCAAGAGAATGCTGCTCCTGTGCCCAGGTATCAGAACCTGAACTTGGGGGAGAATGCTGCTGTTCCCCCTCCTGGGTTTGTAAGGAGCAACGGAAACCAGGCCCAACAAGCAGCACCAACTAATGGTACAAGTACAACTGATAACATGGTGGGCATGGTTGTTTCTGGTGTTGTTGAAGCATCATTTGACGCCGGCTACCTTCTGAGAGTTAGGGTTGGTAATACTGGTACCACTTTGAGGGGTGTTGTCTTCAAGCCTGGACATTATGCTCCTGTTGTACCAGAAAATGATGTGGCTCCAGATGTTGAAATGATCCGACGGCATGAAATTGCGCTCCCAGTTGAAAACCATTCTTCTGTTCATGGCCATAAACCTCATTCAAGAGATGCTTCCCACCCCGTTAATCATGTGGCTTCAGAAGGCCGACATGTGGCTCCGGTGGCTGCACAAAATGTTAATCGAGTAATGCCCAGAGGCAACTTGATGCCTGTTGTGCTCGAACCTTGCAAGGTATCAAATGGGCCGGCACTCACCAGTGAATCGAATCCCGTTGCAACCCAGGCTGCAACCGTAGCAACCTCGAAAGGGAAACAGGTTGTATCAGCTGCTCCATCGAATGGGTGTTCAATTCCCAACGATCAGGTGTCAGCAGTTCAAAATCAAATGCTCGGGTCCCAACCTCACACCGGCCATCAGGTAATATATGATGCTAAAATAAATGAGAATGGTCCTACTGATCCACCCTCTGTAGAGGAGCTGCGTAAGACAGAAGCCAAGCAAATGACATTGCCTGAGAATGTGCCCTCAGAATCAACTGAGAGTCACGTAGAGGCTAGTAACTTGGCTACTCAACCCTTAGTCGAGCCCCTGCAAGCAGTAGAGCATAAAGACCATCCTGCATCTGCTCCCAAACCAATGGAGGATGGCAGAAATGGCAAAATGTCAGAGCTATTGCAGGACATAGCCACTGATTTCCACCACCTCATTAAGGTTTTGCAGGAAAGCATGAAGGAGAGGATGAAGGACCAAACTGAGAAACTGTTCGGAGATGGACAAAATGATCATTCAAGCACACCTTCACAGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

42.46

Weight (kDa)

6.18

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	218, 713
AclWI	GGATC	3 cut(s)	86, 403, 827
AcoI	YGGCCR	2 cut(s)	460, 784
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	2 cut(s)	67, 285
AfaI	GTAC	4 cut(s)	223, 229, 325, 375
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	272, 349, 404, 440, 477, 723, 752, 1164
AjnI	CCWGG	5 cut(s)	119, 166, 192, 352, 654
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	701, 853, 1045
AluI	AGCT	3 cut(s)	701, 853, 1045
Alw21I	GWGCWC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	86, 403, 827
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	5 cut(s)	195, 460, 517, 617, 784
ApeKI	GCWGC	7 cut(s)	107, 152, 206, 539, 659, 701, 853
Asp700I	GAANNNNTTC	1 cut(s)	1136
Asp718I	GGTACC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	5 cut(s)	196, 617, 768, 824, 1120
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	3 cut(s)	768, 824, 1120
BaeGI	GKGCMC	2 cut(s)	120, 900
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	7 cut(s)	94, 139, 218, 526, 646, 688, 840
BccI	CCATC	5 cut(s)	715, 795, 996, 1013, 1139
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	5 cut(s)	121, 168, 194, 354, 656
BclI	TGATCA	1 cut(s)	1156
BfaI	CTAG	1 cut(s)	930
BfmI	CTRYAG	1 cut(s)	843
BisI	GCNGC	7 cut(s)	108, 153, 207, 540, 660, 702, 854
BlsI	GCNGC	7 cut(s)	109, 154, 208, 541, 661, 703, 855
Bme1390I	CCNGG	5 cut(s)	121, 168, 194, 354, 656
Bme18I	GGWCC	3 cut(s)	768, 824, 1120
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	5 cut(s)	196, 617, 768, 824, 1120
BmiI	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
BmrFI	CCNGG	5 cut(s)	121, 168, 194, 354, 656
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	6 cut(s)	19, 284, 472, 570, 793, 1004
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	922
BsaHI	GRCGYC	2 cut(s)	67, 285
BsaJI	CCNNGG	4 cut(s)	71, 119, 167, 654
BsaWI	WCCGGW	1 cut(s)	532
Bse118I	RCCGGY	3 cut(s)	287, 619, 782
Bse1I	ACTGG	3 cut(s)	325, 434, 630
Bse3DI	GCAATG	2 cut(s)	21, 881
BseBI	CCWGG	5 cut(s)	121, 168, 194, 354, 656
BseDI	CCNNGG	4 cut(s)	71, 119, 167, 654
BseGI	GGATG	4 cut(s)	42, 988, 1024, 1119
BseMI	GCAATG	2 cut(s)	21, 881
BseMII	CTCAG	5 cut(s)	290, 879, 903, 915, 1119
BseNI	ACTGG	3 cut(s)	325, 434, 630
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	2 cut(s)	120, 900
BseXI	GCAGC	7 cut(s)	94, 139, 218, 526, 646, 688, 840
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	5 cut(s)	197, 462, 519, 619, 786
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	4 cut(s)	288, 533, 620, 783
BslFI	GGGAC	1 cut(s)	754
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	2 cut(s)	109, 154
BsnI	GGCC	5 cut(s)	197, 462, 519, 619, 786
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	4 cut(s)	120, 594, 900, 963
Bsp143I	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
BspANI	GGCC	5 cut(s)	197, 462, 519, 619, 786
BspCNI	CTCAG	5 cut(s)	291, 880, 904, 914, 1120
BspLI	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
BspPI	GGATC	3 cut(s)	86, 403, 827
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	21, 881
BsrFI	RCCGGY	3 cut(s)	287, 619, 782
BsrI	ACTGG	3 cut(s)	325, 434, 630
BssAI	RCCGGY	3 cut(s)	287, 619, 782
BssECI	CCNNGG	4 cut(s)	71, 119, 167, 654
BssMI	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
BssNI	GRCGYC	2 cut(s)	67, 285
Bst2UI	CCWGG	5 cut(s)	121, 168, 194, 354, 656
Bst4CI	ACNGT	2 cut(s)	667, 1137
BstACI	GRCGYC	2 cut(s)	67, 285
BstBAI	YACGTR	1 cut(s)	922
BstC8I	GCNNGC	3 cut(s)	289, 621, 969
BstDEI	CTNAG	6 cut(s)	299, 888, 901, 912, 952, 1128
BstDSI	CCRYGG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	1082
BstF5I	GGATG	4 cut(s)	42, 988, 1024, 1119
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	6 cut(s)	13, 94, 411, 736, 835, 1159
BstMBI	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 536, 589, 656, 668, 1029
BstNI	CCWGG	5 cut(s)	121, 168, 194, 354, 656
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	5 cut(s)	119, 166, 192, 352, 654
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	2 cut(s)	120, 900
BstV1I	GCAGC	7 cut(s)	94, 139, 218, 526, 646, 688, 840
BstV2I	GAAGAC	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	1012
BsuRI	GGCC	5 cut(s)	197, 462, 519, 619, 786
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	42, 988, 1024, 1119
BtsIMutI	CAGTG	2 cut(s)	637, 1062
Cac8I	GCNNGC	3 cut(s)	289, 621, 969
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	3 cut(s)	287, 619, 782
Cfr13I	GGNCC	5 cut(s)	196, 617, 768, 824, 1120
CseI	GACGC	2 cut(s)	75, 293
Csp6I	GTAC	4 cut(s)	222, 228, 324, 374
CviAII	CATG	7 cut(s)	241, 250, 419, 458, 503, 524, 1102
CviQI	GTAC	4 cut(s)	222, 228, 324, 374
DdeI	CTNAG	6 cut(s)	299, 888, 901, 912, 952, 1128
DpnI	GATC	6 cut(s)	12, 93, 410, 735, 834, 1158
DpnII	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
EaeI	YGGCCR	2 cut(s)	460, 784
Eco24I	GRGCYC	1 cut(s)	963
Eco47I	GGWCC	3 cut(s)	768, 824, 1120
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	764
EcoNI	CCTNNNNNAGG	1 cut(s)	1082
EcoO109I	RGGNCCY	1 cut(s)	768
EcoRII	CCWGG	5 cut(s)	119, 166, 192, 352, 654
EcoT38I	GRGCYC	1 cut(s)	963
FaeI	CATG	7 cut(s)	244, 253, 422, 461, 506, 527, 1105
FalI	AAGNNNNNCTT	4 cut(s)	469, 501, 1156, 1188
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	7 cut(s)	240, 249, 418, 457, 502, 523, 1101
FbaI	TGATCA	1 cut(s)	1156
Fnu4HI	GCNGC	7 cut(s)	108, 153, 207, 540, 660, 702, 854
FokI	GGATG	4 cut(s)	29, 975, 1031, 1126
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	7 cut(s)	108, 153, 207, 540, 660, 702, 854
FspBI	CTAG	1 cut(s)	930
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	7 cut(s)	108, 153, 207, 540, 660, 702, 854
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	5 cut(s)	197, 462, 519, 619, 786
HapII	CCGG	4 cut(s)	288, 533, 620, 783
HgaI	GACGC	2 cut(s)	75, 293
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	2 cut(s)	67, 285
Hin1II	CATG	7 cut(s)	244, 253, 422, 461, 506, 527, 1105
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HinfI	GANTC	4 cut(s)	635, 640, 905, 916
HpaII	CCGG	4 cut(s)	288, 533, 620, 783
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	2 cut(s)	59, 65
Hpy188I	TCNGA	7 cut(s)	129, 300, 413, 514, 904, 1042, 1142
Hpy188III	TCNNGA	5 cut(s)	14, 98, 395, 477, 1185
Hpy8I	GTNNAC	2 cut(s)	59, 65
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	5 cut(s)	305, 509, 1099, 1111, 1182
HpyCH4III	ACNGT	2 cut(s)	667, 1137
HpyCH4IV	ACGT	2 cut(s)	61, 921
HpyCH4V	TGCA	9 cut(s)	4, 542, 603, 650, 662, 967, 995, 1051, 1093
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 536, 589, 656, 668, 1029
HpyF3I	CTNAG	6 cut(s)	299, 888, 901, 912, 952, 1128
HpySE526I	ACGT	2 cut(s)	61, 921
Hsp92I	GRCGYC	2 cut(s)	67, 285
Hsp92II	CATG	7 cut(s)	244, 253, 422, 461, 506, 527, 1105
HspAI	GCGC	1 cut(s)	428
KflI	GGGWCCC	1 cut(s)	768
KpnI	GGTACC	1 cut(s)	327
KroI	GCCGGC	2 cut(s)	287, 619
KroNI	GCCGGC	2 cut(s)	289, 621
Ksp22I	TGATCA	1 cut(s)	1156
Kzo9I	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
LmnI	GCTCC	9 cut(s)	115, 180, 370, 397, 435, 535, 709, 850, 1006
Lsp1109I	GCAGC	7 cut(s)	94, 139, 218, 526, 646, 688, 840
LweI	GCATC	6 cut(s)	19, 284, 472, 570, 793, 1004
MaeI	CTAG	1 cut(s)	930
MaeII	ACGT	2 cut(s)	61, 921
MaeIII	GTNAC	2 cut(s)	917, 932
MalI	GATC	6 cut(s)	12, 93, 410, 735, 834, 1158
MboI	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
MboII	GAAGA	2 cut(s)	337, 441
MhlI	GDGCHC	4 cut(s)	120, 594, 900, 963
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	2 cut(s)	423, 723
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	925
MmeI	TCCRAC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	462
MroNI	GCCGGC	2 cut(s)	287, 619
MroXI	GAANNNNTTC	1 cut(s)	1136
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	3 cut(s)	498, 552, 1083
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	4 cut(s)	288, 533, 620, 783
MspR9I	CCNGG	5 cut(s)	121, 168, 194, 354, 656
Mva1269I	GAATGC	2 cut(s)	109, 154
MvaI	CCWGG	5 cut(s)	121, 168, 194, 354, 656
MwoI	GCNNNNNNNGC	6 cut(s)	203, 536, 589, 656, 668, 1029
NaeI	GCCGGC	2 cut(s)	289, 621
NdeII	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
NgoMIV	GCCGGC	2 cut(s)	287, 619
NlaIII	CATG	7 cut(s)	244, 253, 422, 461, 506, 527, 1105
NlaIV	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
NmuCI	GTSAC	1 cut(s)	917
NspI	RCATGY	1 cut(s)	527
PciI	ACATGT	1 cut(s)	523
PctI	GAATGC	2 cut(s)	109, 154
PdiI	GCCGGC	2 cut(s)	289, 621
PdmI	GAANNNNTTC	1 cut(s)	1136
PfeI	GAWTC	3 cut(s)	635, 640, 905
PflMI	CCANNNNNTGG	2 cut(s)	218, 713
PkrI	GCNGC	7 cut(s)	109, 154, 208, 541, 661, 703, 855
PleI	GAGTC	1 cut(s)	924
PpsI	GAGTC	1 cut(s)	924
Ppu21I	YACGTR	1 cut(s)	922
PpuMI	RGGWCCY	1 cut(s)	768
PscI	ACATGT	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	768
Psp6I	CCWGG	5 cut(s)	119, 166, 192, 352, 654
PspGI	CCWGG	5 cut(s)	119, 166, 192, 352, 654
PspN4I	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
PspPI	GGNCC	5 cut(s)	196, 617, 768, 824, 1120
PspPPI	RGGWCCY	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	4 cut(s)	223, 229, 325, 375
RsaNI	GTAC	4 cut(s)	222, 228, 324, 374
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	498, 552, 1083
SatI	GCNGC	7 cut(s)	108, 153, 207, 540, 660, 702, 854
Sau3AI	GATC	6 cut(s)	10, 91, 408, 733, 832, 1156
Sau96I	GGNCC	5 cut(s)	196, 617, 768, 824, 1120
SchI	GAGTC	1 cut(s)	925
ScrFI	CCNGG	5 cut(s)	121, 168, 194, 354, 656
SduI	GDGCHC	4 cut(s)	120, 594, 900, 963
SfaNI	GCATC	6 cut(s)	19, 284, 472, 570, 793, 1004
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	3 cut(s)	768, 824, 1120
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	423, 723
SspMI	CTAG	1 cut(s)	930
StyD4I	CCNGG	5 cut(s)	119, 166, 192, 352, 654
TaaI	ACNGT	2 cut(s)	667, 1137
TaiI	ACGT	2 cut(s)	64, 924
TaqI	TCGA	6 cut(s)	556, 594, 638, 677, 710, 957
TasI	AATT	2 cut(s)	423, 723
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	635, 640, 905
Tru1I	TTAA	3 cut(s)	498, 552, 1083
Tru9I	TTAA	3 cut(s)	498, 552, 1083
TscAI	CASTG	2 cut(s)	637, 1069
TseFI	GTSAC	1 cut(s)	917
TseI	GCWGC	7 cut(s)	107, 152, 206, 539, 659, 701, 853
Tsp45I	GTSAC	1 cut(s)	917
TspDTI	ATGAA	4 cut(s)	435, 446, 1118, 1130
TspGWI	ACGGA	2 cut(s)	88, 201
TspRI	CASTG	2 cut(s)	637, 1069
Van91I	CCANNNNNTGG	2 cut(s)	218, 713
VpaK11BI	GGWCC	3 cut(s)	768, 824, 1120
XagI	CCTNNNNNAGG	1 cut(s)	1082
XceI	RCATGY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	1136
XspI	CTAG	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.